Wall clock time and date at job start Fri Apr 10 2020 17:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 C 1.53178 * 109.54761 * 294.81983 * 16 15 14 18 18 C 1.53099 * 109.15958 * 183.24010 * 17 16 15 19 19 O 1.42896 * 109.48585 * 57.47827 * 18 17 16 20 20 C 1.42903 * 114.09740 * 298.88430 * 19 18 17 21 21 C 1.53090 * 109.41499 * 61.16410 * 20 19 18 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 29 29 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 30 30 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 31 31 H 1.08998 * 109.54585 * 54.99906 * 16 15 14 32 32 H 1.08998 * 109.52223 * 303.05904 * 17 16 15 33 33 H 1.08999 * 109.51771 * 63.24384 * 17 16 15 34 34 H 1.09002 * 109.40676 * 297.49546 * 18 17 16 35 35 H 1.09000 * 109.48138 * 177.50564 * 18 17 16 36 36 H 1.09005 * 109.48116 * 301.17558 * 20 19 18 37 37 H 1.09000 * 109.48322 * 181.14096 * 20 19 18 38 38 H 1.09002 * 109.52248 * 182.48675 * 21 20 19 39 39 H 1.08996 * 109.58060 * 62.32595 * 21 20 19 40 40 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 41 41 H 1.08999 * 109.51460 * 183.07675 * 22 14 13 42 42 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 43 43 H 1.09008 * 109.62635 * 111.48013 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 6 5.3534 -7.8413 -0.2089 18 6 6.8187 -8.1542 -0.5229 19 8 7.3303 -9.0671 0.4501 20 6 7.3067 -8.5670 1.7886 21 6 5.8607 -8.2728 2.1964 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8053 0.8859 29 1 3.7085 -6.7119 2.6020 30 1 3.2217 -7.9531 1.4227 31 1 5.8007 -6.3295 1.2628 32 1 4.7644 -8.7560 -0.2757 33 1 4.9745 -7.1101 -0.9229 34 1 7.3996 -7.2322 -0.4971 35 1 6.8905 -8.6017 -1.5143 36 1 7.8940 -7.6504 1.8446 37 1 7.7299 -9.3119 2.4625 38 1 5.8445 -7.8498 3.2009 39 1 5.2816 -9.1960 2.1805 40 1 1.5327 -5.5231 1.8288 41 1 1.3329 -6.8757 0.6888 42 1 0.1612 -4.7606 -0.0453 43 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408316407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:30 Heat of formation + Delta-G solvation = -104.123627 kcal Electronic energy + Delta-G solvation = -23030.808864 eV Core-core repulsion = 19688.626515 eV Total energy + Delta-G solvation = -3342.182349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78484 -39.98730 -38.37962 -35.94275 -34.67504 -33.94673 -32.10443 -31.89159 -29.47995 -28.22507 -26.25463 -24.63817 -24.34910 -23.30174 -22.28144 -20.76571 -20.51027 -18.49529 -17.83218 -17.08307 -16.88181 -16.59327 -16.10323 -16.02773 -15.86090 -15.67391 -15.53737 -15.47481 -14.84061 -14.41800 -14.23085 -13.68224 -13.59291 -13.27575 -13.10708 -12.87730 -12.79814 -12.71028 -12.61081 -12.24128 -12.17234 -12.14552 -11.98568 -11.90250 -11.51242 -11.31460 -11.07901 -10.94167 -10.38792 -9.80287 -9.44521 -9.00305 -8.30021 -6.85082 1.39556 1.40993 1.56361 2.23058 2.44881 2.71084 2.97839 3.06323 3.58871 3.72065 3.89972 3.95394 4.06259 4.11515 4.19077 4.29960 4.35136 4.39076 4.43303 4.47634 4.56902 4.67964 4.72818 4.75345 4.79005 4.87826 4.88735 4.93382 4.95750 5.00266 5.05235 5.18796 5.24602 5.37151 5.37481 5.49246 5.73275 6.02459 6.10712 6.14071 6.34818 6.41107 6.86887 7.41967 8.45533 8.66443 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.003683 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.486862 B = 7600.645782 C = 8146.711676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.245 1.245 6 H -0.274 1.274 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.539 3.461 10 O -0.635 6.635 11 N -0.648 5.648 12 C 0.125 3.875 13 C 0.050 3.950 14 N -0.530 5.530 15 C 0.064 3.936 16 C -0.082 4.082 17 C -0.134 4.134 18 C 0.058 3.942 19 O -0.406 6.406 20 C 0.059 3.941 21 C -0.146 4.146 22 C 0.059 3.941 23 C 0.123 3.877 24 H 0.274 0.726 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.017 0.983 28 H 0.107 0.893 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.014 0.986 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.193 -14.669 2.912 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.168 1.168 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.112 0.888 9 C 0.346 3.654 10 O -0.522 6.522 11 N -0.385 5.385 12 C 0.002 3.998 13 C -0.079 4.079 14 N -0.255 5.255 15 C -0.063 4.063 16 C -0.101 4.101 17 C -0.172 4.172 18 C -0.019 4.019 19 O -0.325 6.325 20 C -0.018 4.018 21 C -0.184 4.184 22 C -0.070 4.070 23 C -0.001 4.001 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.125 0.875 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.537 -14.909 2.425 21.669 hybrid contribution -0.685 1.276 0.900 1.705 sum 14.852 -13.634 3.326 20.433 Atomic orbital electron populations 1.70197 1.09637 1.28905 1.36648 1.27018 0.95492 1.05024 0.91165 0.85039 0.78943 0.75061 0.79410 1.18688 1.16817 1.19915 1.21507 0.94828 0.89740 1.54461 0.88754 1.18699 0.86570 0.84245 0.75909 1.90532 1.16699 1.87427 1.57562 1.48129 1.06722 1.05434 1.78187 1.21756 0.79913 0.99476 0.98682 1.22583 1.00110 0.88884 0.96305 1.61939 1.03426 1.05928 1.54209 1.22175 0.95852 0.94651 0.93671 1.21191 0.94525 0.98820 0.95531 1.22036 0.96790 1.01352 0.97008 1.22697 0.93413 0.93455 0.92307 1.87889 1.84049 1.43467 1.17108 1.22680 0.95673 1.00128 0.83305 1.22182 0.97072 0.99675 0.99473 1.22318 0.88699 0.99696 0.96288 1.21300 0.96179 0.84117 0.98484 0.91642 0.91807 0.89764 0.96421 0.87471 0.95193 0.90133 0.90880 0.91969 0.90409 0.92786 0.88342 0.92660 0.87760 0.90008 0.91182 0.96780 0.88069 0.92870 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.98 11.84 21.83 0.26 -50.72 16 2 C 0.03 1.56 5.50 85.30 0.47 2.02 16 3 Si 1.00 40.71 29.56 68.60 2.03 42.73 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.57 -32.23 8.86 24.83 0.22 -32.01 16 8 H 0.09 4.73 5.74 -2.91 -0.02 4.71 16 9 C 0.54 31.96 7.63 86.36 0.66 32.62 16 10 O -0.63 -43.50 14.49 -4.31 -0.06 -43.56 16 11 N -0.65 -30.23 3.00 -822.12 -2.47 -32.69 16 12 C 0.13 4.54 6.50 86.50 0.56 5.10 16 13 C 0.05 1.44 5.48 86.54 0.47 1.91 16 14 N -0.53 -14.20 4.16 -894.31 -3.72 -17.92 16 15 C 0.06 1.33 4.36 86.30 0.38 1.71 16 16 C -0.08 -1.42 2.19 -10.67 -0.02 -1.45 16 17 C -0.13 -2.40 5.28 30.69 0.16 -2.24 16 18 C 0.06 0.97 6.84 72.02 0.49 1.46 16 19 O -0.41 -7.86 10.77 -148.98 -1.60 -9.46 16 20 C 0.06 0.85 6.84 72.01 0.49 1.35 16 21 C -0.15 -2.12 5.43 30.69 0.17 -1.95 16 22 C 0.06 1.85 5.62 86.38 0.49 2.34 16 23 C 0.12 4.98 6.61 86.35 0.57 5.55 16 24 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 25 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.08 3.18 5.46 -2.39 -0.01 3.17 16 27 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 2.43 6.08 -2.38 -0.01 2.41 16 29 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 30 H 0.08 1.57 7.97 -2.39 -0.02 1.55 16 31 H 0.07 1.30 6.20 -2.39 -0.01 1.28 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.56 7.86 -2.39 -0.02 1.54 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 2.61 7.99 -2.39 -0.02 2.59 16 42 H 0.05 2.48 7.04 -2.39 -0.02 2.46 16 43 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -76.16 332.58 0.52 -75.64 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.99 Total: 19.57 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.11 Total: 16.42 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -5.93 Total: -101.34 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.67 Total: -53.02 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -76.16 0.52 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408316407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.485 kcal (2) G-P(sol) polarization free energy of solvation -76.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds