Wall clock time and date at job start Fri Apr 10 2020 17:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 C 1.52999 * 109.45630 * 178.61578 * 12 11 10 14 14 N 1.46502 * 109.46567 * 185.00496 * 13 12 11 15 15 C 1.34783 * 119.99787 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99729 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00172 * 179.97438 * 15 14 13 18 18 O 1.42911 * 112.84846 * 25.33212 * 17 15 14 19 19 C 1.53779 * 113.61593 * 254.13492 * 17 15 14 20 20 C 1.53959 * 87.01853 * 220.04860 * 19 17 15 21 21 C 1.53774 * 87.11331 * 25.36026 * 20 19 17 22 22 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 23 23 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 24 24 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 26 26 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 27 27 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 28 28 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 29 29 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 30 30 H 1.09006 * 109.46769 * 304.99999 * 13 12 11 31 31 H 1.08994 * 109.47708 * 65.00219 * 13 12 11 32 32 H 0.96990 * 120.00673 * 359.97438 * 14 13 12 33 33 H 0.96695 * 113.99454 * 309.66345 * 18 17 15 34 34 H 1.08994 * 113.61288 * 334.56495 * 19 17 15 35 35 H 1.08998 * 113.61337 * 105.47325 * 19 17 15 36 36 H 1.09008 * 113.53471 * 270.81172 * 20 19 17 37 37 H 1.08999 * 113.74260 * 139.94855 * 20 19 17 38 38 H 1.09000 * 113.61930 * 220.09126 * 21 20 19 39 39 H 1.09002 * 113.68746 * 89.19746 * 21 20 19 40 40 H 1.08995 * 109.49486 * 181.31850 * 22 12 11 41 41 H 1.08997 * 109.49624 * 301.38055 * 22 12 11 42 42 H 1.08994 * 109.46893 * 113.74819 * 23 9 7 43 43 H 1.09005 * 109.71148 * 353.45478 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 6 1.0423 -5.6951 2.9734 14 7 -0.1983 -5.8661 3.7337 15 6 -0.2299 -6.6982 4.7935 16 8 0.7686 -7.3057 5.1174 17 6 -1.5057 -6.8738 5.5760 18 8 -2.6742 -6.5952 4.8018 19 6 -1.4911 -6.1714 6.9439 20 6 -2.2163 -7.4111 7.4982 21 6 -1.5789 -8.2036 6.3449 22 6 0.4931 -3.3232 2.4116 23 6 0.2252 -2.3417 1.2663 24 1 -0.4849 0.8401 -0.0004 25 1 2.7377 -3.5132 -0.7622 26 1 1.0450 -4.0600 -0.8529 27 1 2.3026 -5.6082 0.5696 28 1 2.8993 -4.2578 1.5650 29 1 -0.0310 -5.0424 1.2236 30 1 1.3520 -6.6560 2.5625 31 1 1.8223 -5.3131 3.6320 32 1 -0.9967 -5.3801 3.4749 33 1 -2.6438 -5.7492 4.3345 34 1 -0.4902 -6.0320 7.3524 35 1 -2.0922 -5.2627 6.9745 36 1 -3.3025 -7.3448 7.4344 37 1 -1.8683 -7.7188 8.4843 38 1 -2.2507 -8.9331 5.8925 39 1 -0.6020 -8.6216 6.5881 40 1 -0.3890 -3.3887 3.0485 41 1 1.3414 -2.9737 3.0000 42 1 -0.6768 -2.6406 0.7324 43 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408319953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:32 Heat of formation + Delta-G solvation = -74.841286 kcal Electronic energy + Delta-G solvation = -22789.221016 eV Core-core repulsion = 19448.308444 eV Total energy + Delta-G solvation = -3340.912571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73786 -39.72810 -38.78124 -36.67741 -35.70330 -34.42334 -32.40634 -31.52686 -28.88183 -27.05230 -26.79140 -25.47975 -23.86974 -22.79977 -21.94429 -20.80725 -20.61048 -19.46114 -18.66230 -17.30530 -16.95102 -16.82496 -16.25805 -16.01395 -15.78433 -15.59132 -15.30041 -15.00884 -14.71879 -14.59295 -14.03783 -13.87098 -13.66614 -13.50715 -13.16238 -13.07418 -12.84687 -12.58895 -12.50262 -12.28658 -12.14546 -11.95770 -11.85658 -11.83405 -11.62406 -11.29382 -11.18477 -11.13740 -10.54694 -10.46354 -10.17322 -8.66623 -7.87835 -5.32461 1.38936 1.45058 1.47645 1.57585 2.03724 2.50969 2.92506 3.26662 3.40450 3.51323 3.69091 3.70550 3.79985 3.83188 3.93845 4.04478 4.41108 4.51239 4.52435 4.66659 4.71043 4.72268 4.74734 4.75858 4.91874 4.93333 5.01368 5.02601 5.05259 5.15308 5.21847 5.27531 5.33087 5.39889 5.41179 5.55079 5.66322 5.79443 6.23607 6.40062 6.63164 7.05901 7.16239 7.88006 8.38429 9.18326 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.003469 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.170153 B = 8069.271284 C = 8531.040345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.141 3.859 11 C -0.116 4.116 12 C -0.079 4.079 13 C 0.134 3.866 14 N -0.713 5.713 15 C 0.497 3.503 16 O -0.573 6.573 17 C 0.085 3.915 18 O -0.535 6.535 19 C -0.149 4.149 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.120 4.120 23 C 0.176 3.824 24 H 0.250 0.750 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.410 0.590 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.001 0.999 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 -13.711 12.248 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.155 4.155 12 C -0.098 4.098 13 C 0.011 3.989 14 N -0.365 5.365 15 C 0.283 3.717 16 O -0.452 6.452 17 C 0.041 3.959 18 O -0.343 6.343 19 C -0.187 4.187 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.159 4.159 23 C 0.051 3.949 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.398 -14.571 12.662 19.798 hybrid contribution 0.256 2.008 -0.835 2.190 sum -4.142 -12.563 11.827 17.744 Atomic orbital electron populations 1.70176 1.06490 1.25700 1.55504 1.25748 0.96074 1.01303 1.01363 0.85263 0.78603 0.80111 0.76812 1.19348 1.21923 1.21605 1.19525 0.92729 0.86210 1.40819 0.91953 1.44346 1.36076 1.02280 1.50977 1.21034 0.97270 0.85970 0.94157 1.21860 0.96840 0.99571 0.97260 1.21171 0.99166 0.94065 0.95398 1.21344 0.86118 0.98882 0.92591 1.46030 1.14798 1.45441 1.30269 1.21590 0.91108 0.78420 0.80570 1.90676 1.37130 1.48467 1.68959 1.22642 0.81650 1.01448 0.90206 1.86566 1.37445 1.44360 1.65895 1.23548 1.02437 0.99608 0.93074 1.22778 1.00624 0.94270 0.98232 1.23002 1.02710 0.94077 0.95596 1.22042 1.00770 0.95129 0.97979 1.20599 0.87767 0.97573 0.89010 0.94127 0.93062 0.96571 0.89867 0.92684 0.90427 0.91434 0.92481 0.75316 0.75581 0.89380 0.88710 0.88697 0.89409 0.89942 0.88437 0.90844 0.93641 0.98136 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 11.20 21.65 0.24 -53.92 16 2 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 3 Si 0.96 44.52 29.59 68.60 2.03 46.55 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 8 H 0.06 3.36 7.88 -2.91 -0.02 3.34 16 9 N -0.61 -30.04 3.00 -699.02 -2.10 -32.13 16 10 C 0.14 5.62 6.51 86.36 0.56 6.18 16 11 C -0.12 -3.59 5.36 30.67 0.16 -3.42 16 12 C -0.08 -2.23 2.19 -10.76 -0.02 -2.26 16 13 C 0.13 3.40 5.06 86.38 0.44 3.84 16 14 N -0.71 -15.68 5.22 -463.06 -2.42 -18.10 16 15 C 0.50 12.27 7.16 87.65 0.63 12.89 16 16 O -0.57 -18.35 16.04 -3.04 -0.05 -18.40 16 17 C 0.09 1.63 1.75 -11.02 -0.02 1.61 16 18 O -0.53 -9.12 13.31 -148.98 -1.98 -11.10 16 19 C -0.15 -2.38 7.47 31.18 0.23 -2.15 16 20 C -0.12 -1.71 8.02 31.18 0.25 -1.46 16 21 C -0.12 -2.12 7.37 31.12 0.23 -1.89 16 22 C -0.12 -4.01 5.25 30.67 0.16 -3.85 16 23 C 0.18 8.02 5.30 86.36 0.46 8.48 16 24 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 26 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 7.01 5.98 -92.72 -0.55 6.46 16 33 H 0.39 4.14 7.45 -74.06 -0.55 3.59 16 34 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.98 7.37 -2.39 -0.02 1.96 16 40 H 0.07 2.01 7.15 -2.39 -0.02 1.99 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.05 2.67 6.07 -2.38 -0.01 2.65 16 Total: -1.00 -68.31 339.57 -0.07 -68.38 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.10 Total: 16.58 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.30 Total: 2.13 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.27 Total: -104.16 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -2.03 Total: -29.49 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.31 -0.07 -68.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408319953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.457 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds