Wall clock time and date at job start Fri Apr 10 2020 17:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48508 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46972 * 299.99420 * 3 2 1 6 6 H 1.48490 * 109.47421 * 59.99659 * 3 2 1 7 7 C 1.37881 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99850 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46750 * 55.00062 * 11 10 9 13 13 N 1.46898 * 109.47496 * 295.00592 * 11 10 9 14 14 C 1.50701 * 109.47303 * 174.99909 * 11 10 9 15 15 O 1.21280 * 119.99904 * 99.99922 * 14 11 10 16 16 N 1.34776 * 119.99981 * 280.00590 * 14 11 10 17 17 C 1.48149 * 122.64596 * 354.48153 * 16 14 11 18 18 C 1.52775 * 110.68812 * 131.61426 * 17 16 14 19 19 O 1.43922 * 111.92510 * 45.21818 * 18 17 16 20 20 C 1.41091 * 111.15888 * 301.99864 * 19 18 17 21 21 H 1.09001 * 109.78235 * 309.04058 * 20 19 18 22 22 C 1.52791 * 118.41981 * 181.91098 * 20 19 18 23 23 C 1.55704 * 102.65855 * 201.25543 * 22 20 19 24 24 C 1.55034 * 106.33907 * 23.91669 * 23 22 20 25 25 C 1.45631 * 122.64355 * 174.49034 * 16 14 11 26 26 H 1.09000 * 109.97210 * 119.11816 * 25 16 14 27 27 H 0.96993 * 119.99921 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47521 * 59.99576 * 9 7 2 29 29 H 1.09007 * 109.47054 * 299.99442 * 9 7 2 30 30 H 1.09004 * 109.47342 * 59.99925 * 10 9 7 31 31 H 1.09000 * 109.47250 * 300.00355 * 10 9 7 32 32 H 1.00898 * 111.00287 * 176.04891 * 13 11 10 33 33 H 1.00906 * 110.99306 * 299.99517 * 13 11 10 34 34 H 1.09001 * 109.23094 * 11.30768 * 17 16 14 35 35 H 1.09000 * 109.20288 * 251.90819 * 17 16 14 36 36 H 1.08996 * 108.99192 * 284.57914 * 18 17 16 37 37 H 1.09005 * 108.98722 * 165.84352 * 18 17 16 38 38 H 1.09008 * 110.74734 * 319.50436 * 22 20 19 39 39 H 1.08995 * 110.75494 * 82.86846 * 22 20 19 40 40 H 1.09004 * 110.05711 * 264.70020 * 23 22 20 41 41 H 1.08995 * 110.13550 * 143.17315 * 23 22 20 42 42 H 1.08998 * 110.29540 * 245.13089 * 24 23 22 43 43 H 1.09000 * 110.28898 * 123.00903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7881 -5.0072 -0.8404 13 7 0.7290 -5.1182 1.2566 14 6 2.4550 -6.1299 -0.1227 15 8 2.7872 -6.7531 0.8633 16 7 2.9576 -6.4592 -1.3291 17 6 2.5044 -5.8184 -2.5856 18 6 3.7000 -5.3746 -3.4268 19 8 4.7143 -6.3932 -3.4986 20 6 5.1690 -6.7507 -2.2116 21 1 5.4424 -5.8544 -1.6548 22 6 6.2823 -7.7907 -2.0967 23 6 6.1146 -8.3104 -0.6385 24 6 4.6404 -8.0359 -0.2446 25 6 3.9888 -7.4732 -1.5003 26 1 3.6151 -8.2818 -2.1285 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8721 -3.6044 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 0.1647 -5.9546 1.2546 33 1 1.3492 -5.1023 2.0524 34 1 1.8924 -4.9491 -2.3449 35 1 1.9082 -6.5303 -3.1564 36 1 4.1304 -4.4758 -2.9852 37 1 3.3577 -5.1433 -4.4355 38 1 6.1324 -8.5978 -2.8139 39 1 7.2593 -7.3274 -2.2336 40 1 6.7871 -7.7725 0.0297 41 1 6.3207 -9.3798 -0.5953 42 1 4.5947 -7.3066 0.5642 43 1 4.1499 -8.9627 0.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424096209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:38 Heat of formation + Delta-G solvation = -81.274885 kcal Electronic energy + Delta-G solvation = -23553.722189 eV Core-core repulsion = 20212.530636 eV Total energy + Delta-G solvation = -3341.191553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01419 -38.83789 -36.45016 -35.18751 -34.81487 -32.83063 -30.15829 -29.83654 -28.57730 -27.49024 -25.94271 -23.58464 -23.14289 -21.38138 -20.85926 -20.31625 -18.82592 -16.98328 -16.78020 -16.57011 -16.18228 -15.68717 -15.38617 -15.14843 -14.85416 -14.53300 -14.33396 -13.90795 -13.47577 -13.38409 -13.05080 -12.61417 -12.34755 -12.08638 -11.84733 -11.71399 -11.56237 -11.47313 -11.12078 -10.94178 -10.94127 -10.67797 -10.58452 -10.53345 -10.25685 -9.87987 -9.71778 -9.36366 -9.01951 -8.48597 -8.36215 -8.20858 -5.97437 -3.99809 2.67921 2.87995 3.31320 3.39303 3.42715 3.42770 4.28795 4.42820 4.47495 4.70200 4.71135 4.83236 4.90244 4.97802 5.10895 5.15965 5.22462 5.27350 5.34624 5.38532 5.41822 5.49464 5.63093 5.66304 5.70040 5.76696 5.80608 5.88568 6.10259 6.11750 6.36797 6.54577 6.61356 6.93711 7.02060 7.31506 7.47610 7.71439 7.75745 7.91327 8.08724 8.22810 8.44212 9.08215 9.63783 11.13413 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004529 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.848929 B = 6181.348545 C = 6749.085495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.077 3.923 12 H 0.097 0.903 13 N -0.806 5.806 14 C 0.491 3.509 15 O -0.545 6.545 16 N -0.608 5.608 17 C 0.073 3.927 18 C 0.046 3.954 19 O -0.366 6.366 20 C 0.062 3.938 21 H 0.067 0.933 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.122 4.122 25 C 0.102 3.898 26 H 0.078 0.922 27 H 0.259 0.741 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.334 0.666 33 H 0.348 0.652 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -16.360 -6.022 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.279 3.721 15 O -0.423 6.423 16 N -0.343 5.343 17 C -0.050 4.050 18 C -0.032 4.032 19 O -0.284 6.284 20 C 0.003 3.997 21 H 0.085 0.915 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.002 4.002 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.992 -15.939 -5.829 18.759 hybrid contribution 0.815 0.179 0.144 0.847 sum 8.807 -15.759 -5.685 18.927 Atomic orbital electron populations 1.69981 1.05946 1.26352 1.50819 1.24984 0.94787 0.99042 0.95421 0.86609 0.80108 0.84117 0.77582 1.19869 1.21065 1.21025 1.21294 0.92890 0.91268 1.50621 0.92987 1.19018 0.93503 0.89792 0.98216 1.21668 0.98868 0.92162 1.00592 1.21878 0.93638 0.93359 0.95034 0.88569 1.59010 1.26885 1.44296 1.03209 1.22705 0.82137 0.85517 0.81721 1.90589 1.60737 1.54130 1.36850 1.48160 1.40264 1.39011 1.06852 1.22529 0.97676 0.99778 0.85033 1.23025 0.88078 0.90567 1.01481 1.87887 1.55377 1.58098 1.27050 1.22967 0.94374 0.97873 0.84510 0.91540 1.22100 0.97418 0.97766 0.97461 1.22599 0.96962 1.01274 0.95183 1.22162 0.93775 1.02461 0.97538 1.22242 0.88460 0.91097 0.98427 0.90406 0.93118 0.96927 0.94620 0.92837 0.93028 0.85436 0.83824 0.87404 0.90719 0.91763 0.87214 0.90454 0.90561 0.91213 0.91151 0.88142 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 10 C -0.09 -1.87 4.56 -26.73 -0.12 -1.99 16 11 C 0.08 1.27 2.31 -68.87 -0.16 1.11 16 12 H 0.10 1.51 6.77 -51.93 -0.35 1.16 16 13 N -0.81 -13.45 8.44 -5.66 -0.05 -13.50 16 14 C 0.49 7.78 6.90 -10.99 -0.08 7.71 16 15 O -0.55 -9.63 13.20 5.56 0.07 -9.56 16 16 N -0.61 -8.29 2.97 -164.41 -0.49 -8.78 16 17 C 0.07 0.83 6.15 -3.25 -0.02 0.81 16 18 C 0.05 0.50 6.81 37.04 0.25 0.76 16 19 O -0.37 -4.55 10.85 -34.89 -0.38 -4.93 16 20 C 0.06 0.75 2.96 -25.46 -0.08 0.67 16 21 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 22 C -0.11 -1.05 6.79 -25.40 -0.17 -1.23 16 23 C -0.12 -1.16 6.89 -24.22 -0.17 -1.33 16 24 C -0.12 -1.50 5.33 -26.04 -0.14 -1.64 16 25 C 0.10 1.29 3.16 -67.40 -0.21 1.08 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.96 7.43 -51.93 -0.39 0.58 16 32 H 0.33 4.86 9.06 -39.29 -0.36 4.50 16 33 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 34 H 0.11 1.28 5.34 -51.93 -0.28 1.00 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 1.52 5.78 -51.93 -0.30 1.22 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -31.47 335.17 -8.53 -40.00 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.01 Total: 7.67 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.44 Total: -6.63 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.20 Total: -48.05 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.31 Total: -14.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.47 -8.53 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424096209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.277 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds