Wall clock time and date at job start Fri Apr 10 2020 17:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48508 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46972 * 299.99420 * 3 2 1 6 6 H 1.48490 * 109.47421 * 59.99659 * 3 2 1 7 7 C 1.37881 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99850 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46750 * 55.00062 * 11 10 9 13 13 N 1.46898 * 109.47496 * 295.00592 * 11 10 9 14 14 C 1.50701 * 109.47303 * 174.99909 * 11 10 9 15 15 O 1.21280 * 119.99904 * 99.99922 * 14 11 10 16 16 N 1.34776 * 119.99981 * 280.00590 * 14 11 10 17 17 C 1.48149 * 122.64596 * 354.48153 * 16 14 11 18 18 C 1.52775 * 110.68812 * 131.61426 * 17 16 14 19 19 O 1.43922 * 111.92510 * 45.21818 * 18 17 16 20 20 C 1.41091 * 111.15888 * 301.99864 * 19 18 17 21 21 H 1.09001 * 109.78235 * 309.04058 * 20 19 18 22 22 C 1.52791 * 118.41981 * 181.91098 * 20 19 18 23 23 C 1.55704 * 102.65855 * 201.25543 * 22 20 19 24 24 C 1.55034 * 106.33907 * 23.91669 * 23 22 20 25 25 C 1.45631 * 122.64355 * 174.49034 * 16 14 11 26 26 H 1.09000 * 109.97210 * 119.11816 * 25 16 14 27 27 H 0.96993 * 119.99921 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47521 * 59.99576 * 9 7 2 29 29 H 1.09007 * 109.47054 * 299.99442 * 9 7 2 30 30 H 1.09004 * 109.47342 * 59.99925 * 10 9 7 31 31 H 1.09000 * 109.47250 * 300.00355 * 10 9 7 32 32 H 1.00898 * 111.00287 * 176.04891 * 13 11 10 33 33 H 1.00906 * 110.99306 * 299.99517 * 13 11 10 34 34 H 1.09001 * 109.23094 * 11.30768 * 17 16 14 35 35 H 1.09000 * 109.20288 * 251.90819 * 17 16 14 36 36 H 1.08996 * 108.99192 * 284.57914 * 18 17 16 37 37 H 1.09005 * 108.98722 * 165.84352 * 18 17 16 38 38 H 1.09008 * 110.74734 * 319.50436 * 22 20 19 39 39 H 1.08995 * 110.75494 * 82.86846 * 22 20 19 40 40 H 1.09004 * 110.05711 * 264.70020 * 23 22 20 41 41 H 1.08995 * 110.13550 * 143.17315 * 23 22 20 42 42 H 1.08998 * 110.29540 * 245.13089 * 24 23 22 43 43 H 1.09000 * 110.28898 * 123.00903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7881 -5.0072 -0.8404 13 7 0.7290 -5.1182 1.2566 14 6 2.4550 -6.1299 -0.1227 15 8 2.7872 -6.7531 0.8633 16 7 2.9576 -6.4592 -1.3291 17 6 2.5044 -5.8184 -2.5856 18 6 3.7000 -5.3746 -3.4268 19 8 4.7143 -6.3932 -3.4986 20 6 5.1690 -6.7507 -2.2116 21 1 5.4424 -5.8544 -1.6548 22 6 6.2823 -7.7907 -2.0967 23 6 6.1146 -8.3104 -0.6385 24 6 4.6404 -8.0359 -0.2446 25 6 3.9888 -7.4732 -1.5003 26 1 3.6151 -8.2818 -2.1285 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8721 -3.6044 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 0.1647 -5.9546 1.2546 33 1 1.3492 -5.1023 2.0524 34 1 1.8924 -4.9491 -2.3449 35 1 1.9082 -6.5303 -3.1564 36 1 4.1304 -4.4758 -2.9852 37 1 3.3577 -5.1433 -4.4355 38 1 6.1324 -8.5978 -2.8139 39 1 7.2593 -7.3274 -2.2336 40 1 6.7871 -7.7725 0.0297 41 1 6.3207 -9.3798 -0.5953 42 1 4.5947 -7.3066 0.5642 43 1 4.1499 -8.9627 0.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424096209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:37 Heat of formation + Delta-G solvation = -103.362663 kcal Electronic energy + Delta-G solvation = -23554.679987 eV Core-core repulsion = 20212.530636 eV Total energy + Delta-G solvation = -3342.149351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.08636 -39.99410 -37.45426 -36.64210 -35.91336 -34.81333 -31.96313 -30.76447 -29.57621 -28.65777 -27.51423 -25.21446 -24.09851 -22.69298 -21.94869 -21.64379 -20.06091 -18.48522 -17.99059 -17.79709 -17.53122 -16.93981 -16.57490 -16.47556 -16.14414 -15.86092 -15.54851 -15.06026 -14.77605 -14.54490 -14.27065 -13.98261 -13.81647 -13.62439 -13.32556 -12.83783 -12.78728 -12.69633 -12.48908 -12.35098 -12.20549 -11.98828 -11.82644 -11.75921 -11.53638 -11.49530 -11.27705 -11.11084 -10.70930 -10.49243 -9.58565 -9.54276 -8.14601 -6.24724 1.39974 1.41088 1.43026 1.54137 1.79627 2.43816 2.54656 3.18752 3.27020 3.45394 3.60372 3.72894 3.80052 3.91985 3.99554 4.04636 4.21972 4.24792 4.29071 4.32954 4.38752 4.45413 4.58683 4.66165 4.77148 4.81274 4.88716 4.94288 4.98003 5.05625 5.16045 5.20175 5.26886 5.54324 5.56051 5.82101 5.96895 6.01548 6.05057 6.26137 6.29612 6.47618 6.93434 6.99994 7.43610 8.96693 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004529 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.848929 B = 6181.348545 C = 6749.085495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.078 4.078 11 C 0.085 3.915 12 H 0.108 0.892 13 N -0.817 5.817 14 C 0.493 3.507 15 O -0.566 6.566 16 N -0.606 5.606 17 C 0.068 3.932 18 C 0.045 3.955 19 O -0.371 6.371 20 C 0.063 3.937 21 H 0.047 0.953 22 C -0.103 4.103 23 C -0.114 4.114 24 C -0.121 4.121 25 C 0.096 3.904 26 H 0.088 0.912 27 H 0.262 0.738 28 H -0.003 1.003 29 H 0.006 0.994 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.346 0.654 33 H 0.345 0.655 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -17.007 -7.351 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.117 4.117 11 C -0.031 4.031 12 H 0.125 0.875 13 N -0.346 5.346 14 C 0.280 3.720 15 O -0.446 6.446 16 N -0.340 5.340 17 C -0.053 4.053 18 C -0.032 4.032 19 O -0.289 6.289 20 C 0.003 3.997 21 H 0.065 0.935 22 C -0.141 4.141 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.008 4.008 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.015 0.985 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.155 0.845 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.321 -16.601 -7.189 20.351 hybrid contribution 0.372 0.365 0.545 0.754 sum 9.693 -16.236 -6.644 20.042 Atomic orbital electron populations 1.70103 1.07563 1.27455 1.51718 1.25851 0.95646 1.02851 0.94944 0.85526 0.79048 0.79465 0.77755 1.18949 1.20176 1.20742 1.21712 0.93223 0.92686 1.50387 0.92846 1.18812 0.93743 0.91124 0.95881 1.21366 0.97707 0.92162 1.00427 1.21657 0.93788 0.92168 0.95463 0.87465 1.58993 1.27151 1.45279 1.03168 1.22353 0.82042 0.85308 0.82271 1.90593 1.61347 1.54843 1.37783 1.48212 1.39921 1.38991 1.06829 1.22717 0.98178 1.00137 0.84315 1.23141 0.87536 0.89739 1.02795 1.87886 1.55643 1.58296 1.27106 1.23013 0.94880 0.97644 0.84127 0.93499 1.22131 0.97013 0.97370 0.97580 1.22568 0.94796 1.02684 0.95163 1.22084 0.95861 1.01389 0.96506 1.22424 0.88398 0.91152 0.98784 0.89427 0.92903 0.98505 0.97600 0.94171 0.91936 0.84030 0.84113 0.87974 0.88422 0.93035 0.84497 0.89187 0.89402 0.91067 0.89037 0.91184 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.13 4.86 29.85 0.15 2.27 16 10 C -0.08 -3.14 4.56 30.59 0.14 -3.00 16 11 C 0.08 2.83 2.31 44.17 0.10 2.93 16 12 H 0.11 3.33 6.77 -2.39 -0.02 3.31 16 13 N -0.82 -27.64 8.44 -171.81 -1.45 -29.09 16 14 C 0.49 15.52 6.90 87.66 0.61 16.13 16 15 O -0.57 -20.14 13.20 -3.03 -0.04 -20.18 16 16 N -0.61 -15.97 2.97 -792.45 -2.35 -18.31 16 17 C 0.07 1.46 6.15 85.99 0.53 1.99 16 18 C 0.04 0.91 6.81 71.91 0.49 1.40 16 19 O -0.37 -8.46 10.85 -147.75 -1.60 -10.07 16 20 C 0.06 1.41 2.96 31.42 0.09 1.50 16 21 H 0.05 1.24 8.00 -2.39 -0.02 1.22 16 22 C -0.10 -1.73 6.79 31.46 0.21 -1.52 16 23 C -0.11 -1.95 6.89 32.22 0.22 -1.72 16 24 C -0.12 -2.87 5.33 31.04 0.17 -2.71 16 25 C 0.10 2.30 3.16 45.80 0.14 2.45 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.01 0.32 7.75 -2.38 -0.02 0.30 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 2.34 7.43 -2.39 -0.02 2.32 16 32 H 0.35 10.08 9.06 -89.70 -0.81 9.27 16 33 H 0.35 11.95 8.58 -89.69 -0.77 11.18 16 34 H 0.10 2.31 5.34 -2.39 -0.01 2.30 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 37 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 2.14 5.78 -2.39 -0.01 2.12 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.64 335.17 -0.15 -67.80 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.57 Total: 29.07 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 3.54 Total: -9.67 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -3.51 Total: -102.96 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.64 Total: -30.24 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.64 -0.15 -67.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424096209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.567 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds