Wall clock time and date at job start Fri Apr 10 2020 17:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00157 * 2 1 4 4 C 1.53000 * 109.47328 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47308 * 64.99657 * 4 3 2 6 6 C 1.46496 * 120.00462 * 270.00545 * 5 4 3 7 7 C 1.34777 * 119.99663 * 89.99797 * 5 4 3 8 8 O 1.21843 * 120.00114 * 0.02562 * 7 5 4 9 9 N 1.33832 * 120.00147 * 180.27726 * 7 5 4 10 10 C 1.32931 * 120.00335 * 179.72624 * 9 7 5 11 11 C 1.41206 * 126.38025 * 0.02599 * 10 9 7 12 12 C 1.34956 * 108.25105 * 179.97438 * 11 10 9 13 13 N 1.36454 * 108.94396 * 359.97438 * 12 11 10 14 14 C 1.46497 * 125.85130 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46839 * 84.98263 * 14 13 12 16 16 H 1.07998 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00297 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00421 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99740 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47026 * 90.00018 * 19 17 15 21 21 H 1.48498 * 109.46944 * 210.00034 * 19 17 15 22 22 H 1.48497 * 109.46902 * 329.99594 * 19 17 15 23 23 N 1.37423 * 126.38130 * 179.71062 * 10 9 7 24 24 H 0.97004 * 126.36573 * 0.03671 * 23 10 9 25 25 H 1.08999 * 109.47376 * 300.00124 * 1 2 3 26 26 H 1.08998 * 109.47563 * 60.00314 * 1 2 3 27 27 H 1.09010 * 109.47387 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46764 * 60.00064 * 3 2 1 29 29 H 1.08996 * 109.47187 * 299.99694 * 3 2 1 30 30 H 1.09006 * 109.47224 * 304.99855 * 4 3 2 31 31 H 1.08996 * 109.47306 * 185.00018 * 4 3 2 32 32 H 1.09001 * 109.47017 * 269.99768 * 6 5 4 33 33 H 1.08997 * 109.47346 * 29.99456 * 6 5 4 34 34 H 1.08999 * 109.47701 * 150.00040 * 6 5 4 35 35 H 1.08006 * 125.87181 * 359.92613 * 11 10 9 36 36 H 1.07998 * 125.52710 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47563 * 204.97521 * 14 13 12 38 38 H 1.08996 * 109.47475 * 324.98421 * 14 13 12 39 39 H 0.97005 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1062 -0.8926 -1.3402 7 6 4.2633 1.3328 -2.3199 8 8 4.1559 2.5442 -2.2455 9 7 4.6611 0.7655 -3.4649 10 6 4.9386 1.5235 -4.5211 11 6 4.8607 2.9320 -4.5848 12 6 5.2223 3.3196 -5.8259 13 7 5.5305 2.2135 -6.5632 14 6 5.9682 2.2088 -7.9613 15 6 7.4582 2.4258 -8.0219 16 1 8.0227 2.5547 -7.1102 17 6 8.1010 2.4597 -9.2412 18 7 9.4012 2.6496 -9.2941 19 14 7.1245 2.2375 -10.8181 20 1 6.6622 3.5621 -11.3048 21 1 7.9862 1.6047 -11.8488 22 1 5.9492 1.3691 -10.5543 23 7 5.3604 1.0828 -5.7524 24 1 5.5106 0.1605 -6.0128 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8428 31 1 3.9784 2.1765 0.0902 32 1 5.1155 -1.1860 -1.0515 33 1 3.3858 -1.3632 -0.6713 34 1 3.9139 -1.2123 -2.3644 35 1 4.5623 3.5865 -3.7791 36 1 5.2622 4.3397 -6.1781 37 1 5.7220 1.2493 -8.4159 38 1 5.4624 3.0080 -8.5030 39 1 9.8535 2.6731 -10.1519 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438311454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:57 Heat of formation + Delta-G solvation = 41.819953 kcal Electronic energy + Delta-G solvation = -21800.631523 eV Core-core repulsion = 18361.237419 eV Total energy + Delta-G solvation = -3439.394104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81590 -39.17393 -37.74120 -35.16565 -34.09169 -32.92182 -31.17711 -31.05097 -29.90671 -27.13712 -26.67404 -25.59171 -23.48080 -22.45634 -21.35804 -21.05459 -18.92857 -17.40764 -17.09123 -16.57111 -16.30021 -15.80808 -15.67303 -15.23450 -14.94100 -14.68288 -14.30063 -14.02389 -13.71187 -13.26714 -12.93559 -12.68634 -12.54060 -12.38486 -12.30384 -11.97418 -11.88391 -11.72427 -11.47238 -11.05825 -11.02734 -10.67676 -10.05155 -9.77495 -9.64782 -9.63275 -9.05294 -9.03576 -8.32301 -8.15358 -6.82259 -6.50592 -4.58973 1.74622 2.02711 2.96974 3.01516 3.07828 3.13753 3.49250 3.78051 3.98226 4.35479 4.64173 4.77900 5.07659 5.13437 5.21889 5.23109 5.32798 5.36317 5.50977 5.57791 5.73806 5.76105 5.88165 5.92237 6.04138 6.06872 6.12638 6.29136 6.38449 6.70391 6.95019 7.06866 7.17988 7.27551 7.57355 7.74609 8.01519 8.25058 8.46755 8.53716 9.01900 9.60648 10.60982 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.003044 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.144536 B = 9194.783333 C = 9263.642549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.045 3.955 4 C 0.137 3.863 5 N -0.611 5.611 6 C 0.107 3.893 7 C 0.687 3.313 8 O -0.633 6.633 9 N -0.705 5.705 10 C 0.489 3.511 11 C -0.330 4.330 12 C 0.163 3.837 13 N -0.347 5.347 14 C 0.230 3.770 15 C -0.564 4.564 16 H 0.085 0.915 17 C 0.083 3.917 18 N -0.877 5.877 19 Si 0.875 3.125 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.471 5.471 24 H 0.444 0.556 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 -3.398 11.034 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.033 4.033 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.037 4.037 7 C 0.387 3.613 8 O -0.516 6.516 9 N -0.469 5.469 10 C 0.235 3.765 11 C -0.363 4.363 12 C 0.020 3.980 13 N -0.133 5.133 14 C 0.112 3.888 15 C -0.602 4.602 16 H 0.103 0.897 17 C -0.123 4.123 18 N -0.512 5.512 19 Si 0.700 3.300 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.189 1.189 23 N -0.194 5.194 24 H 0.291 0.709 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.201 0.799 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.322 -3.886 10.659 17.498 hybrid contribution -0.426 0.277 -1.013 1.133 sum -13.747 -3.609 9.646 17.177 Atomic orbital electron populations 1.22683 0.81685 1.02333 0.99671 1.87878 1.19164 1.28194 1.95374 1.23105 0.95215 0.84621 1.00359 1.21244 0.91272 1.00042 0.86165 1.46471 1.70517 1.06840 1.10752 1.21443 0.99545 0.79694 1.03013 1.16586 0.77709 0.83545 0.83428 1.90711 1.60696 1.14898 1.85314 1.68091 1.42223 1.36833 0.99738 1.18738 0.84382 0.89628 0.83791 1.22421 1.19646 0.95131 0.99054 1.22794 0.92114 0.91742 0.91392 1.47399 1.59560 0.96576 1.09758 1.20294 0.97491 0.99582 0.71457 1.21273 0.89560 1.53534 0.95830 0.89661 1.24832 0.94903 0.93710 0.98888 1.69859 1.08207 1.46596 1.26568 0.86889 0.80337 0.79340 0.83418 1.19364 1.20320 1.18947 1.44354 1.64634 1.03099 1.07346 0.70853 0.94451 0.94335 0.89952 0.93000 0.92764 0.90501 0.88660 0.94481 0.92047 0.90599 0.79899 0.79559 0.93430 0.92263 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.86 9.53 -35.23 -0.34 -5.19 16 3 C 0.04 0.56 6.28 37.16 0.23 0.79 16 4 C 0.14 1.84 5.81 -4.04 -0.02 1.82 16 5 N -0.61 -10.09 2.84 -187.59 -0.53 -10.62 16 6 C 0.11 1.52 10.23 59.84 0.61 2.13 16 7 C 0.69 13.79 8.19 -87.76 -0.72 13.07 16 8 O -0.63 -13.73 12.84 5.06 0.06 -13.67 16 9 N -0.71 -14.14 9.22 -15.79 -0.15 -14.29 16 10 C 0.49 9.55 8.07 -155.29 -1.25 8.30 16 11 C -0.33 -6.18 9.52 -39.62 -0.38 -6.55 16 12 C 0.16 2.74 11.45 -16.66 -0.19 2.55 16 13 N -0.35 -6.33 3.63 -62.25 -0.23 -6.55 16 14 C 0.23 4.45 5.26 -5.20 -0.03 4.42 16 15 C -0.56 -13.76 9.94 -34.44 -0.34 -14.10 16 16 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.88 -24.10 13.96 55.43 0.77 -23.33 16 19 Si 0.87 17.97 27.47 -169.99 -4.67 13.30 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 23 N -0.47 -8.37 7.38 31.33 0.23 -8.14 16 24 H 0.44 6.91 8.96 -182.54 -1.64 5.27 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.10 1.33 7.42 -51.93 -0.39 0.94 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.78 7.11 -51.93 -0.37 0.41 16 34 H 0.08 1.16 7.30 -51.93 -0.38 0.78 16 35 H 0.18 3.61 5.77 -52.48 -0.30 3.31 16 36 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.05 0.89 7.20 -51.93 -0.37 0.51 16 38 H 0.06 1.05 7.57 -51.93 -0.39 0.65 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -31.60 331.54 -7.72 -39.32 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.81 Total: 8.36 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -1.07 Total: 15.82 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.10 Total: -62.94 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.27 Total: -18.86 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.67 Total: 13.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.60 -7.72 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438311454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds