Wall clock time and date at job start Fri Apr 10 2020 17:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.60443 * 2 1 4 4 O 1.21279 * 120.00015 * 114.43343 * 3 2 1 5 5 N 1.34773 * 120.00302 * 294.43512 * 3 2 1 6 6 C 1.46494 * 120.00396 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47384 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47355 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47397 * 180.02562 * 8 7 6 10 10 C 1.36932 * 120.00157 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00063 * 0.02562 * 10 9 8 12 12 C 1.38814 * 120.00184 * 179.97438 * 10 9 8 13 13 N 1.31622 * 119.99879 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00187 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47197 * 60.00062 * 14 12 10 16 16 H 1.48497 * 109.47289 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47163 * 299.99994 * 14 12 10 18 18 C 1.53344 * 109.60454 * 239.67691 * 2 1 3 19 19 C 1.53078 * 108.42608 * 172.71659 * 18 2 1 20 20 C 1.50168 * 109.82252 * 48.94058 * 19 18 2 21 21 O 1.21279 * 118.24635 * 162.38050 * 20 19 18 22 22 N 1.33238 * 123.59540 * 342.28431 * 20 19 18 23 23 C 1.45749 * 124.07362 * 2.38590 * 22 20 19 24 24 H 1.08998 * 109.47259 * 180.32165 * 1 2 3 25 25 H 1.08996 * 109.47275 * 300.32407 * 1 2 3 26 26 H 1.08999 * 109.46766 * 60.32449 * 1 2 3 27 27 H 0.96999 * 119.99771 * 0.02562 * 5 3 2 28 28 H 1.08997 * 109.47562 * 300.00039 * 6 5 3 29 29 H 1.09007 * 109.47026 * 60.00042 * 6 5 3 30 30 H 1.09000 * 109.47458 * 300.00519 * 7 6 5 31 31 H 1.09000 * 109.46887 * 60.00533 * 7 6 5 32 32 H 1.08997 * 109.47410 * 300.00125 * 8 7 6 33 33 H 1.09007 * 109.47208 * 60.00146 * 8 7 6 34 34 H 0.96998 * 119.99492 * 359.97438 * 9 8 7 35 35 H 0.96993 * 120.00304 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.67508 * 52.97971 * 18 2 1 37 37 H 1.09002 * 109.67199 * 292.44373 * 18 2 1 38 38 H 1.08992 * 109.40147 * 169.02796 * 19 18 2 39 39 H 1.09002 * 109.39828 * 288.85618 * 19 18 2 40 40 H 0.97004 * 117.97746 * 182.30729 * 22 20 19 41 41 H 1.09007 * 109.30179 * 220.53699 * 23 22 20 42 42 H 1.08994 * 109.13444 * 101.04707 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.6483 1.8451 0.9562 5 7 1.8069 2.2165 -1.0626 6 6 2.2979 3.5967 -1.0624 7 6 1.9076 4.2771 -2.3760 8 6 2.4210 5.7184 -2.3760 9 7 2.0467 6.3701 -3.6336 10 6 2.4005 7.6732 -3.8612 11 1 2.9559 8.2205 -3.1137 12 6 2.0464 8.2906 -5.0530 13 7 1.3700 7.6236 -5.9640 14 14 2.5296 10.0680 -5.3637 15 1 4.0087 10.1937 -5.3203 16 1 2.0356 10.4891 -6.6993 17 1 1.9283 10.9346 -4.3183 18 6 2.0445 -0.7293 -1.2469 19 6 3.5639 -0.5565 -1.3161 20 6 4.1752 -0.8881 0.0148 21 8 5.3648 -1.1203 0.0581 22 7 3.4827 -0.9395 1.1519 23 6 2.0430 -0.7310 1.2414 24 1 -0.3634 -1.0276 0.0058 25 1 -0.3633 0.5188 0.8870 26 1 -0.3633 0.5088 -0.8929 27 1 1.3165 1.8763 -1.8272 28 1 1.8564 4.1394 -0.2265 29 1 3.3834 3.5962 -0.9624 30 1 2.3494 3.7344 -3.2116 31 1 0.8222 4.2777 -2.4763 32 1 1.9795 6.2614 -1.5404 33 1 3.5064 5.7175 -2.2758 34 1 1.5483 5.8785 -4.3049 35 1 1.1222 8.0550 -6.7966 36 1 1.5855 -0.3012 -2.1380 37 1 1.7984 -1.7891 -1.1798 38 1 3.9698 -1.2228 -2.0771 39 1 3.7994 0.4757 -1.5756 40 1 3.9665 -1.1286 1.9712 41 1 1.8194 -0.1367 2.1275 42 1 1.5462 -1.6978 1.3211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164436235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:08 Heat of formation + Delta-G solvation = -108.163167 kcal Electronic energy + Delta-G solvation = -22503.072627 eV Core-core repulsion = 19095.289200 eV Total energy + Delta-G solvation = -3407.783427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16015 -40.26358 -37.84169 -37.26868 -35.99259 -34.63412 -33.55930 -32.37192 -31.16935 -27.27707 -27.10260 -25.31304 -24.89582 -23.58959 -22.59759 -21.77525 -19.96408 -19.06705 -18.26944 -17.53826 -17.22327 -17.02761 -16.96117 -16.50875 -16.40105 -15.64912 -15.32456 -15.29751 -15.00317 -14.71322 -14.43743 -14.24419 -13.76433 -13.48604 -13.40739 -13.30513 -13.11363 -12.79508 -12.62651 -12.44210 -12.39706 -12.20560 -12.10406 -12.04524 -11.81050 -11.75868 -10.94644 -10.87801 -10.74381 -10.13404 -10.06179 -9.02737 -7.97385 -5.26470 1.47459 1.50191 1.56395 1.57001 1.61589 2.11521 2.34639 2.55852 3.36335 3.37929 3.47081 3.63308 3.71369 3.76034 3.96236 4.07307 4.27862 4.33233 4.37076 4.45411 4.60988 4.68976 4.71423 4.72947 4.74852 4.84975 4.86554 4.94480 5.00057 5.12184 5.27569 5.30595 5.35274 5.42137 5.47678 5.77171 6.25511 6.31202 6.53889 7.15895 7.22954 7.32167 8.06516 8.30929 9.25806 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.002836 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.495714 B = 9870.975119 C =10100.125439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C 0.513 3.487 4 O -0.580 6.580 5 N -0.713 5.713 6 C 0.134 3.866 7 C -0.117 4.117 8 C 0.151 3.849 9 N -0.746 5.746 10 C -0.253 4.253 11 H 0.073 0.927 12 C -0.072 4.072 13 N -0.967 5.967 14 Si 0.974 3.026 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.278 1.278 18 C -0.105 4.105 19 C -0.143 4.143 20 C 0.511 3.489 21 O -0.618 6.618 22 N -0.705 5.705 23 C 0.127 3.873 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.416 0.584 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.377 0.623 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.400 0.600 41 H 0.081 0.919 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -22.922 12.142 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C 0.300 3.700 4 O -0.459 6.459 5 N -0.365 5.365 6 C 0.009 3.991 7 C -0.155 4.155 8 C 0.024 3.976 9 N -0.389 5.389 10 C -0.385 4.385 11 H 0.091 0.909 12 C -0.265 4.265 13 N -0.617 5.617 14 Si 0.802 3.198 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.204 1.204 18 C -0.143 4.143 19 C -0.183 4.183 20 C 0.299 3.701 21 O -0.502 6.502 22 N -0.353 5.353 23 C 0.003 3.997 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.253 0.747 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.236 0.764 41 H 0.100 0.900 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.274 -22.506 12.685 26.367 hybrid contribution 0.424 1.113 -0.415 1.261 sum -4.851 -21.393 12.270 25.134 Atomic orbital electron populations 1.21825 0.88144 1.05505 1.03760 1.21267 1.00157 0.89978 0.98140 1.21082 0.78585 0.88502 0.81788 1.90720 1.42396 1.76726 1.36081 1.45897 1.57776 1.12404 1.20452 1.21034 0.98701 0.81831 0.97515 1.21685 1.02191 0.94740 0.96847 1.20679 0.96727 0.92071 0.88123 1.42507 1.67421 1.11264 1.17679 1.19603 1.28556 0.89731 1.00617 0.90931 1.25558 1.01565 1.02551 0.96778 1.69786 1.45264 1.37986 1.08686 0.85217 0.77913 0.79941 0.76723 1.20526 1.21813 1.20372 1.21890 0.91844 1.03477 0.97066 1.21759 0.98437 1.04351 0.93720 1.20656 0.86296 0.75304 0.87840 1.90724 1.18277 1.53087 1.88116 1.45355 1.10325 1.70243 1.09415 1.21565 0.78885 1.01524 0.97734 0.87880 0.92037 0.90219 0.74696 0.92051 0.92915 0.90680 0.90289 0.96122 0.96507 0.79113 0.93815 0.87223 0.86845 0.86502 0.89659 0.76446 0.90014 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.63 8.44 71.98 0.61 -0.02 16 2 C -0.09 -0.97 0.65 -52.84 -0.03 -1.00 16 3 C 0.51 10.31 4.74 87.66 0.42 10.72 16 4 O -0.58 -17.26 15.60 -3.03 -0.05 -17.31 16 5 N -0.71 -13.05 5.31 -463.08 -2.46 -15.51 16 6 C 0.13 3.33 5.67 86.38 0.49 3.82 16 7 C -0.12 -3.24 5.44 30.59 0.17 -3.08 16 8 C 0.15 5.89 6.26 86.38 0.54 6.43 16 9 N -0.75 -37.54 5.60 -343.44 -1.92 -39.46 16 10 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 11 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 12 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 13 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 14 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 C -0.11 -0.80 4.73 30.74 0.15 -0.66 16 19 C -0.14 -2.36 5.51 29.71 0.16 -2.19 16 20 C 0.51 12.23 7.44 87.73 0.65 12.88 16 21 O -0.62 -21.15 17.78 -3.03 -0.05 -21.20 16 22 N -0.70 -12.78 5.11 -467.48 -2.39 -15.17 16 23 C 0.13 1.40 5.41 86.50 0.47 1.86 16 24 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.08 0.28 7.99 -2.39 -0.02 0.27 16 27 H 0.42 5.01 7.60 -92.71 -0.70 4.30 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.38 19.67 7.67 -92.71 -0.71 18.96 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.11 0.39 7.56 -2.39 -0.02 0.37 16 37 H 0.11 0.35 8.13 -2.39 -0.02 0.33 16 38 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.71 7.36 -2.39 -0.02 1.69 16 40 H 0.40 7.16 8.80 -92.71 -0.82 6.34 16 41 H 0.08 1.05 7.73 -2.38 -0.02 1.03 16 42 H 0.11 0.44 8.12 -2.39 -0.02 0.42 16 Total: -1.00 -81.00 343.50 -0.83 -81.84 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -1.19 Total: 25.19 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.92 Total: 11.70 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -6.49 Total: -128.21 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.10 Total: -38.51 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -81.00 -0.83 -81.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164436235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.326 kcal (2) G-P(sol) polarization free energy of solvation -81.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds