Wall clock time and date at job start Fri Apr 10 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47485 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99912 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00019 * 180.02562 * 14 13 12 17 17 H 1.08994 * 110.43696 * 302.54515 * 16 14 13 18 18 C 1.54269 * 110.48428 * 65.22775 * 16 14 13 19 19 C 1.53873 * 106.60177 * 142.29061 * 18 16 14 20 20 C 1.54270 * 106.59583 * 359.97438 * 19 18 16 21 21 H 1.09001 * 110.48633 * 95.07235 * 20 19 18 22 22 C 1.50702 * 110.48812 * 217.71171 * 20 19 18 23 23 N 1.34777 * 119.99863 * 294.77718 * 22 20 19 24 24 O 1.21275 * 119.99894 * 114.76909 * 22 20 19 25 25 C 1.54887 * 110.48840 * 180.02562 * 16 14 13 26 26 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 29 29 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 30 30 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 31 31 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 32 32 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 33 33 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 34 34 H 0.96992 * 119.99570 * 0.02562 * 13 12 11 35 35 H 1.09000 * 110.03332 * 261.57631 * 18 16 14 36 36 H 1.09004 * 110.03538 * 23.00281 * 18 16 14 37 37 H 1.09002 * 110.03256 * 240.71892 * 19 18 16 38 38 H 1.08999 * 110.03566 * 119.28447 * 19 18 16 39 39 H 0.97003 * 120.00411 * 0.02562 * 23 22 20 40 40 H 0.96999 * 120.00073 * 179.97438 * 23 22 20 41 41 H 1.09001 * 110.75998 * 321.69161 * 25 16 14 42 42 H 1.09002 * 110.76005 * 84.88514 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8290 -6.1446 -0.0029 13 7 0.8770 -7.2582 -0.0029 14 6 1.3264 -8.5288 -0.0039 15 8 2.5188 -8.7504 -0.0044 16 6 0.3472 -9.6743 -0.0045 17 1 -0.3175 -9.6072 0.8567 18 6 -0.4642 -9.6903 -1.3165 19 6 -0.6530 -11.1688 -1.6987 20 6 0.0509 -11.9997 -0.6060 21 1 -0.6632 -12.3093 0.1572 22 6 0.7305 -13.2005 -1.2121 23 7 -0.0050 -14.1707 -1.7901 24 8 1.9392 -13.2936 -1.1800 25 6 1.0978 -11.0292 -0.0051 26 1 -0.4851 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0016 28 1 2.6855 -3.7140 -0.8911 29 1 2.6842 -3.7148 0.8888 30 1 0.4370 -4.7622 0.8875 31 1 0.4377 -4.7618 -0.8924 32 1 2.4557 -6.2019 -0.8929 33 1 2.4556 -6.2028 0.8871 34 1 -0.0766 -7.0810 -0.0029 35 1 -1.4343 -9.2180 -1.1614 36 1 0.0841 -9.1689 -2.1011 37 1 -0.1961 -11.3650 -2.6687 38 1 -1.7146 -11.4140 -1.7290 39 1 -0.9718 -14.0961 -1.8163 40 1 0.4324 -14.9434 -2.1806 41 1 1.9847 -10.9793 -0.6368 42 1 1.3644 -11.3235 1.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166773246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:17 Heat of formation + Delta-G solvation = -91.865869 kcal Electronic energy + Delta-G solvation = -21448.487430 eV Core-core repulsion = 18041.410707 eV Total energy + Delta-G solvation = -3407.076724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65220 -39.54452 -37.12029 -35.94629 -34.33260 -34.05891 -32.04012 -30.35892 -29.20343 -29.08810 -25.35280 -23.33004 -22.50756 -21.74517 -21.16536 -20.12118 -19.77899 -18.11278 -17.29336 -17.00845 -16.57562 -16.44586 -15.89589 -15.45572 -14.78417 -14.70241 -14.38179 -14.21920 -13.74295 -13.61467 -13.28039 -13.03559 -12.51611 -12.40582 -12.19742 -11.68938 -11.59418 -11.46919 -11.17577 -11.05902 -10.94376 -10.91544 -10.76379 -10.61181 -10.23247 -10.09296 -10.08574 -9.79582 -9.65899 -9.02341 -8.88032 -6.93605 -5.77457 -3.06314 2.27119 2.61447 3.01399 3.26351 3.44104 3.49215 3.51023 4.00297 4.06162 4.34238 4.59196 4.74639 4.80703 4.87350 5.00779 5.04100 5.11507 5.15293 5.25381 5.32607 5.42167 5.54382 5.57508 5.64182 5.75606 5.84452 6.01264 6.07619 6.12780 6.19718 6.32404 6.37138 6.49180 6.79483 6.83654 6.90738 7.49934 7.70239 7.88701 8.22083 8.41599 9.52712 10.09791 10.44573 11.45559 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.054619 B = 0.002162 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.520064 B =12944.914681 C =13241.863523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.727 5.727 14 C 0.516 3.484 15 O -0.537 6.537 16 C -0.116 4.116 17 H 0.103 0.897 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.118 4.118 21 H 0.104 0.896 22 C 0.523 3.477 23 N -0.858 5.858 24 O -0.536 6.536 25 C -0.085 4.085 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -28.381 -2.361 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.175 4.175 12 C -0.003 4.003 13 N -0.379 5.379 14 C 0.302 3.698 15 O -0.414 6.414 16 C -0.138 4.138 17 H 0.121 0.879 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.140 4.140 21 H 0.122 0.878 22 C 0.308 3.692 23 N -0.422 5.422 24 O -0.411 6.411 25 C -0.123 4.123 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.231 0.769 41 H 0.115 0.885 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.892 -28.279 -2.237 28.973 hybrid contribution -0.784 0.768 -0.169 1.110 sum -6.676 -27.511 -2.406 28.412 Atomic orbital electron populations 1.69658 1.05125 1.25672 1.57917 1.24755 0.95575 0.97771 1.03038 0.86159 0.78658 0.83671 0.77534 1.21695 1.21754 1.20713 1.19253 0.91124 0.84127 1.42548 0.91082 1.42338 1.05853 0.99999 1.89612 1.20528 0.93296 0.85195 0.98223 1.21934 0.99543 0.93367 1.02650 1.21362 0.91802 0.84645 1.02444 1.46094 1.10646 1.05795 1.75318 1.20453 0.89557 0.83810 0.76019 1.90727 1.16871 1.84692 1.49102 1.22197 0.97160 0.94235 1.00169 0.87901 1.22105 1.00243 0.96626 0.96207 1.22095 1.00458 0.94320 0.98036 1.22217 0.99106 0.93651 0.99004 0.87817 1.20576 0.87479 0.83868 0.77328 1.43910 1.11204 1.24719 1.62339 1.90783 1.14319 1.78415 1.57584 1.22244 0.97660 0.89961 1.02482 0.93521 0.78317 0.96045 0.96048 0.91325 0.91343 0.91413 0.91395 0.76596 0.90342 0.90774 0.91064 0.90550 0.77106 0.76936 0.88537 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 10 C 0.16 3.13 6.26 -4.04 -0.03 3.10 16 11 C -0.14 -2.08 5.44 -26.74 -0.15 -2.23 16 12 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 13 N -0.73 -8.19 5.54 -60.29 -0.33 -8.53 16 14 C 0.52 6.39 6.99 -10.99 -0.08 6.31 16 15 O -0.54 -9.12 15.72 5.55 0.09 -9.03 16 16 C -0.12 -0.96 3.25 -90.11 -0.29 -1.25 16 17 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.11 -0.72 6.35 -25.61 -0.16 -0.88 16 19 C -0.11 -0.56 6.35 -25.61 -0.16 -0.73 16 20 C -0.12 -0.75 3.25 -90.11 -0.29 -1.05 16 21 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 22 C 0.52 4.38 7.26 -10.98 -0.08 4.30 16 23 N -0.86 -3.58 8.86 31.22 0.28 -3.31 16 24 O -0.54 -7.28 16.56 5.56 0.09 -7.19 16 25 C -0.09 -0.82 4.98 -24.74 -0.12 -0.95 16 26 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.41 8.47 -40.82 -0.35 3.07 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 37 H 0.07 0.42 7.83 -51.93 -0.41 0.02 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.40 0.41 8.83 -40.82 -0.36 0.05 16 40 H 0.40 1.46 8.93 -40.82 -0.36 1.09 16 41 H 0.10 1.28 6.78 -51.93 -0.35 0.93 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -37.15 349.57 -7.62 -44.78 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.75 Total: 6.37 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.63 Total: 0.78 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.33 Total: -58.53 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.18 Total: -16.22 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.15 -7.62 -44.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166773246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.091 kcal (2) G-P(sol) polarization free energy of solvation -37.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds