Wall clock time and date at job start Fri Apr 10 2020 17:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47324 * 2 1 4 4 C 1.34235 * 116.99806 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99850 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47869 * 304.98081 * 6 4 3 8 8 C 1.53097 * 109.48091 * 64.99810 * 6 4 3 9 9 C 1.53175 * 109.16441 * 177.59069 * 8 6 4 10 10 C 1.53186 * 109.03501 * 303.02406 * 9 8 6 11 11 H 1.08997 * 109.51590 * 297.00727 * 10 9 8 12 12 N 1.46900 * 109.51762 * 176.88819 * 10 9 8 13 13 C 1.47969 * 110.99621 * 179.97438 * 12 10 9 14 14 C 1.53935 * 86.17592 * 222.41344 * 13 12 10 15 15 C 1.50706 * 113.72793 * 138.07984 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71973 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 C 1.47957 * 111.00525 * 80.64017 * 12 10 9 24 24 C 1.53088 * 109.16204 * 56.98027 * 10 9 8 25 25 O 1.42897 * 109.47989 * 184.94045 * 6 4 3 26 26 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46925 * 300.00292 * 1 2 3 28 28 H 1.09002 * 109.47117 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.46925 * 239.99708 * 2 1 3 30 30 H 1.09003 * 109.47233 * 120.00671 * 2 1 3 31 31 H 1.09007 * 109.51777 * 57.68731 * 8 6 4 32 32 H 1.09003 * 109.52243 * 297.50210 * 8 6 4 33 33 H 1.08998 * 109.54169 * 183.15820 * 9 8 6 34 34 H 1.08998 * 109.61711 * 62.93054 * 9 8 6 35 35 H 1.09002 * 113.75573 * 108.09687 * 13 12 10 36 36 H 1.08998 * 113.85586 * 336.74763 * 13 12 10 37 37 H 1.08999 * 113.73231 * 269.24916 * 14 13 12 38 38 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 39 39 H 1.09003 * 113.75874 * 23.26182 * 23 12 10 40 40 H 1.08997 * 113.75781 * 251.89846 * 23 12 10 41 41 H 1.08997 * 109.48509 * 62.37715 * 24 10 9 42 42 H 1.09001 * 109.47552 * 182.40806 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9209 2.9372 0.0012 7 1 3.5157 3.4986 -0.8408 8 6 3.5519 3.6418 1.3093 9 6 4.1910 5.0337 1.3284 10 6 5.7060 4.8903 1.1525 11 1 6.1193 4.3344 1.9940 12 7 6.3217 6.2228 1.0945 13 6 7.7882 6.1224 0.9252 14 6 7.8823 7.2508 1.9680 15 6 8.9783 7.0491 2.9826 16 1 9.6046 6.1706 2.9335 17 6 9.1779 7.9836 3.9765 18 7 8.4117 9.0506 4.0396 19 14 10.5368 7.7339 5.2337 20 1 11.7900 8.3581 4.7386 21 1 10.1438 8.3650 6.5193 22 1 10.7568 6.2803 5.4428 23 6 6.4976 6.7852 2.4517 24 6 5.9916 4.1376 -0.1496 25 8 5.3433 2.8646 -0.1144 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9217 3.0596 2.1534 32 1 2.4683 3.7375 1.3784 33 1 3.9789 5.5193 2.2809 34 1 3.7847 5.6342 0.5144 35 1 8.1365 6.4107 -0.0666 36 1 8.2072 5.1750 1.2642 37 1 7.8843 8.2505 1.5336 38 1 8.5519 9.7077 4.7391 39 1 6.5376 6.0312 3.2377 40 1 5.8144 7.6033 2.6799 41 1 5.6139 4.7147 -0.9936 42 1 7.0668 3.9951 -0.2587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169364597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:23 Heat of formation + Delta-G solvation = -103.627267 kcal Electronic energy + Delta-G solvation = -22647.156404 eV Core-core repulsion = 19207.276917 eV Total energy + Delta-G solvation = -3439.879487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88405 -39.66362 -38.07790 -36.66905 -33.66466 -32.76707 -32.09287 -31.11281 -27.52262 -26.30474 -25.03432 -23.97072 -23.45815 -22.38442 -21.22024 -20.03877 -18.66831 -17.99033 -17.15799 -16.82353 -16.60779 -16.05354 -15.35736 -15.02205 -14.56667 -14.44615 -14.31126 -14.09720 -13.54493 -13.30487 -13.08455 -12.89107 -12.56815 -12.27235 -12.14488 -11.90245 -11.72958 -11.64932 -11.39414 -11.11412 -11.00011 -10.82364 -10.74400 -10.52595 -10.46249 -10.26046 -9.71831 -9.50342 -9.14948 -9.00907 -8.47147 -7.96462 -6.07711 -4.12198 2.00356 2.11408 3.27666 3.34786 3.37857 3.84502 4.35503 4.39018 4.55672 4.59025 4.63862 4.71951 4.83935 4.90639 4.93013 5.04402 5.23453 5.31150 5.35703 5.41930 5.47351 5.60671 5.62998 5.71825 5.90369 5.97238 6.00315 6.12146 6.16845 6.32177 6.42441 6.46970 6.60502 6.71154 6.99351 7.08626 7.13920 7.59015 7.69980 7.87784 8.01957 8.34055 8.90813 9.53089 11.01677 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.003045 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.714116 B = 9191.727614 C = 9199.633249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.469 3.531 5 O -0.487 6.487 6 C 0.103 3.897 7 H 0.097 0.903 8 C -0.141 4.141 9 C -0.107 4.107 10 C 0.014 3.986 11 H 0.054 0.946 12 N -0.483 5.483 13 C -0.006 4.006 14 C 0.040 3.960 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.014 3.986 24 C 0.071 3.929 25 O -0.361 6.361 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 -12.961 -7.918 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.310 3.690 5 O -0.372 6.372 6 C 0.044 3.956 7 H 0.115 0.885 8 C -0.180 4.180 9 C -0.145 4.145 10 C -0.095 4.095 11 H 0.072 0.928 12 N -0.207 5.207 13 C -0.135 4.135 14 C 0.021 3.979 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.114 4.114 24 C -0.005 4.005 25 O -0.279 6.279 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.252 -12.981 -8.313 21.685 hybrid contribution 1.025 -0.588 1.426 1.852 sum -14.226 -13.568 -6.887 20.831 Atomic orbital electron populations 1.21810 0.92410 1.03028 1.03666 1.23058 0.95406 0.79961 1.02777 1.86470 1.23900 1.32651 1.84329 1.23266 0.80740 0.91997 0.72981 1.90684 1.60326 1.42697 1.43540 1.21367 0.84350 0.89470 1.00429 0.88516 1.22161 1.02157 0.97467 0.96187 1.21527 0.94501 0.94848 1.03600 1.22803 0.95748 0.93414 0.97582 0.92761 1.68552 1.11556 1.15668 1.24924 1.24099 0.87852 1.00803 1.00709 1.20298 0.91795 0.94013 0.91793 1.21097 1.16167 1.06730 1.11671 0.92464 1.25011 0.95963 0.94917 0.97743 1.69961 1.38454 1.10509 1.33490 0.86624 0.82311 0.78385 0.80875 1.20543 1.21200 1.19886 1.24081 1.01132 0.98152 0.88049 1.22747 0.97940 0.82805 0.97025 1.87985 1.15654 1.29772 1.94484 0.90163 0.91328 0.91392 0.91139 0.91095 0.90591 0.89469 0.90629 0.90721 0.91476 0.92511 0.92134 0.92868 0.92736 0.91347 0.92014 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.90 10.21 -39.27 -0.40 -4.30 16 4 C 0.47 6.27 7.29 36.01 0.26 6.53 16 5 O -0.49 -8.08 16.26 -25.46 -0.41 -8.49 16 6 C 0.10 1.30 3.17 -27.83 -0.09 1.22 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 8 C -0.14 -1.67 5.40 -26.59 -0.14 -1.81 16 9 C -0.11 -1.45 5.47 -26.54 -0.15 -1.60 16 10 C 0.01 0.23 1.79 -67.57 -0.12 0.11 16 11 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 12 N -0.48 -9.19 5.99 -230.22 -1.38 -10.57 16 13 C -0.01 -0.12 6.33 -2.76 -0.02 -0.14 16 14 C 0.04 0.98 3.61 -90.86 -0.33 0.65 16 15 C -0.52 -13.92 8.77 -34.44 -0.30 -14.22 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -25.23 13.27 55.43 0.74 -24.49 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.01 0.32 7.21 -2.79 -0.02 0.30 16 24 C 0.07 1.05 5.98 37.20 0.22 1.28 16 25 O -0.36 -5.59 9.94 -55.13 -0.55 -6.14 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 37 H 0.06 1.62 8.13 -51.93 -0.42 1.20 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.05 1.24 7.57 -51.93 -0.39 0.84 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.53 7.13 -51.93 -0.37 1.16 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -30.28 343.35 -9.03 -39.31 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.01 Total: -0.73 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.17 Total: -5.70 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.64 Total: -35.06 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -1.36 Total: -18.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -9.03 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169364597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.319 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds