Wall clock time and date at job start Fri Apr 10 2020 17:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47324 * 2 1 4 4 C 1.34235 * 116.99806 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99850 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47869 * 304.98081 * 6 4 3 8 8 C 1.53097 * 109.48091 * 64.99810 * 6 4 3 9 9 C 1.53175 * 109.16441 * 177.59069 * 8 6 4 10 10 C 1.53186 * 109.03501 * 303.02406 * 9 8 6 11 11 H 1.08997 * 109.51590 * 297.00727 * 10 9 8 12 12 N 1.46900 * 109.51762 * 176.88819 * 10 9 8 13 13 C 1.47969 * 110.99621 * 179.97438 * 12 10 9 14 14 C 1.53935 * 86.17592 * 222.41344 * 13 12 10 15 15 C 1.50706 * 113.72793 * 138.07984 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71973 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 C 1.47957 * 111.00525 * 80.64017 * 12 10 9 24 24 C 1.53088 * 109.16204 * 56.98027 * 10 9 8 25 25 O 1.42897 * 109.47989 * 184.94045 * 6 4 3 26 26 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46925 * 300.00292 * 1 2 3 28 28 H 1.09002 * 109.47117 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.46925 * 239.99708 * 2 1 3 30 30 H 1.09003 * 109.47233 * 120.00671 * 2 1 3 31 31 H 1.09007 * 109.51777 * 57.68731 * 8 6 4 32 32 H 1.09003 * 109.52243 * 297.50210 * 8 6 4 33 33 H 1.08998 * 109.54169 * 183.15820 * 9 8 6 34 34 H 1.08998 * 109.61711 * 62.93054 * 9 8 6 35 35 H 1.09002 * 113.75573 * 108.09687 * 13 12 10 36 36 H 1.08998 * 113.85586 * 336.74763 * 13 12 10 37 37 H 1.08999 * 113.73231 * 269.24916 * 14 13 12 38 38 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 39 39 H 1.09003 * 113.75874 * 23.26182 * 23 12 10 40 40 H 1.08997 * 113.75781 * 251.89846 * 23 12 10 41 41 H 1.08997 * 109.48509 * 62.37715 * 24 10 9 42 42 H 1.09001 * 109.47552 * 182.40806 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9209 2.9372 0.0012 7 1 3.5157 3.4986 -0.8408 8 6 3.5519 3.6418 1.3093 9 6 4.1910 5.0337 1.3284 10 6 5.7060 4.8903 1.1525 11 1 6.1193 4.3344 1.9940 12 7 6.3217 6.2228 1.0945 13 6 7.7882 6.1224 0.9252 14 6 7.8823 7.2508 1.9680 15 6 8.9783 7.0491 2.9826 16 1 9.6046 6.1706 2.9335 17 6 9.1779 7.9836 3.9765 18 7 8.4117 9.0506 4.0396 19 14 10.5368 7.7339 5.2337 20 1 11.7900 8.3581 4.7386 21 1 10.1438 8.3650 6.5193 22 1 10.7568 6.2803 5.4428 23 6 6.4976 6.7852 2.4517 24 6 5.9916 4.1376 -0.1496 25 8 5.3433 2.8646 -0.1144 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9217 3.0596 2.1534 32 1 2.4683 3.7375 1.3784 33 1 3.9789 5.5193 2.2809 34 1 3.7847 5.6342 0.5144 35 1 8.1365 6.4107 -0.0666 36 1 8.2072 5.1750 1.2642 37 1 7.8843 8.2505 1.5336 38 1 8.5519 9.7077 4.7391 39 1 6.5376 6.0312 3.2377 40 1 5.8144 7.6033 2.6799 41 1 5.6139 4.7147 -0.9936 42 1 7.0668 3.9951 -0.2587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169364597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:22 Heat of formation + Delta-G solvation = -122.943191 kcal Electronic energy + Delta-G solvation = -22647.994006 eV Core-core repulsion = 19207.276917 eV Total energy + Delta-G solvation = -3440.717089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93020 -41.00832 -39.43891 -37.68460 -35.09845 -34.34771 -33.10110 -32.18038 -29.16714 -27.66641 -26.64301 -25.52957 -24.28298 -23.60948 -22.22755 -21.26390 -20.46145 -18.99205 -18.72370 -18.01637 -17.71182 -17.25473 -16.80433 -16.35245 -16.25378 -15.81400 -15.46237 -15.22887 -14.70964 -14.50476 -14.31738 -13.83784 -13.66526 -13.63380 -13.22460 -13.16484 -13.09032 -12.94091 -12.83607 -12.51625 -12.41722 -12.31337 -12.18834 -11.87638 -11.57677 -11.40726 -11.29820 -11.06692 -10.93240 -10.59238 -10.48875 -9.63649 -8.15973 -6.26738 0.98296 1.20318 1.41101 1.42252 1.52010 2.41345 2.77464 3.13522 3.19502 3.49606 3.62812 3.66138 3.84813 3.90210 3.99659 4.06074 4.16089 4.25264 4.32964 4.44469 4.49885 4.51729 4.64204 4.66282 4.72643 4.80635 4.88609 4.92263 4.93085 5.02933 5.03860 5.11277 5.22850 5.26780 5.37021 5.49291 5.62827 5.84758 5.86617 6.30092 6.37033 6.61100 6.82182 7.41598 8.93270 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.003045 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.714116 B = 9191.727614 C = 9199.633249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.474 3.526 5 O -0.527 6.527 6 C 0.097 3.903 7 H 0.127 0.873 8 C -0.131 4.131 9 C -0.102 4.102 10 C 0.012 3.988 11 H 0.033 0.967 12 N -0.470 5.470 13 C 0.009 3.991 14 C 0.020 3.980 15 C -0.533 4.533 16 H 0.055 0.945 17 C 0.016 3.984 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.027 3.973 24 C 0.079 3.921 25 O -0.381 6.381 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 -13.871 -8.519 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.317 3.683 5 O -0.416 6.416 6 C 0.039 3.961 7 H 0.144 0.856 8 C -0.169 4.169 9 C -0.140 4.140 10 C -0.097 4.097 11 H 0.051 0.949 12 N -0.194 5.194 13 C -0.120 4.120 14 C 0.001 3.999 15 C -0.572 4.572 16 H 0.073 0.927 17 C -0.183 4.183 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.103 4.103 24 C 0.002 3.998 25 O -0.300 6.300 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.553 -13.896 -8.925 23.383 hybrid contribution 1.354 -0.349 1.576 2.107 sum -15.199 -14.245 -7.349 22.089 Atomic orbital electron populations 1.21832 0.89887 1.04506 1.03981 1.23378 0.97320 0.78760 1.02691 1.86474 1.22402 1.34161 1.83596 1.23419 0.81237 0.91779 0.71856 1.90671 1.61353 1.43908 1.45624 1.21630 0.83062 0.89582 1.01868 0.85582 1.22096 1.03690 0.95793 0.95321 1.21493 0.92436 0.96209 1.03823 1.22866 0.97386 0.91515 0.97974 0.94875 1.68480 1.10928 1.17549 1.22444 1.23943 0.88681 0.99028 1.00314 1.20294 0.92588 0.93946 0.93051 1.21431 1.16775 1.06618 1.12330 0.92702 1.25774 0.98174 0.94712 0.99657 1.70071 1.40060 1.11331 1.34336 0.85625 0.79590 0.78411 0.78453 1.19932 1.20875 1.19383 1.23771 0.99480 0.97657 0.89350 1.22644 0.97994 0.82713 0.96407 1.87964 1.17466 1.29969 1.94595 0.88117 0.91101 0.90929 0.91144 0.91435 0.91836 0.86536 0.91295 0.89268 0.89675 0.92439 0.95145 0.92820 0.93723 0.92431 0.90200 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.35 -6.95 10.21 -51.47 -0.53 -7.48 16 4 C 0.47 11.96 7.29 71.24 0.52 12.48 16 5 O -0.53 -17.24 16.26 28.39 0.46 -16.77 16 6 C 0.10 2.24 3.17 29.88 0.09 2.33 16 7 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.13 -2.79 5.40 30.69 0.17 -2.62 16 9 C -0.10 -2.57 5.47 30.71 0.17 -2.40 16 10 C 0.01 0.38 1.79 45.01 0.08 0.46 16 11 H 0.03 1.20 7.63 -2.39 -0.02 1.18 16 12 N -0.47 -17.59 5.99 -882.27 -5.28 -22.88 16 13 C 0.01 0.36 6.33 86.40 0.55 0.90 16 14 C 0.02 1.01 3.61 -10.91 -0.04 0.97 16 15 C -0.53 -29.04 8.77 25.60 0.22 -28.82 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 17 C 0.02 0.90 5.46 84.66 0.46 1.36 16 18 N -0.92 -53.23 13.27 21.45 0.28 -52.95 16 19 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.03 1.19 7.21 86.39 0.62 1.81 16 24 C 0.08 2.20 5.98 72.01 0.43 2.63 16 25 O -0.38 -11.27 9.94 -129.95 -1.29 -12.56 16 26 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.85 7.99 -2.39 -0.02 1.83 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.06 2.29 7.63 -2.39 -0.02 2.27 16 37 H 0.03 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.04 2.07 7.57 -2.39 -0.02 2.05 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 2.80 7.13 -2.39 -0.02 2.79 16 Total: -1.00 -65.80 343.35 1.12 -64.69 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.98 Total: 12.86 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.46 Total: -10.19 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -5.00 Total: -75.83 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.36 Total: -36.81 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.80 1.12 -64.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169364597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.257 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds