Wall clock time and date at job start Fri Apr 10 2020 17:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99811 * 2 1 4 4 H 1.48499 * 109.47173 * 270.00130 * 3 2 1 5 5 H 1.48495 * 109.47087 * 30.00421 * 3 2 1 6 6 H 1.48498 * 109.46555 * 150.00239 * 3 2 1 7 7 C 1.38805 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00432 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00066 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00447 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46811 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99846 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.50706 * 109.47294 * 180.02562 * 16 14 13 18 18 O 1.21279 * 119.99507 * 0.02562 * 17 16 14 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 14 20 20 C 1.46496 * 119.99544 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.47059 * 180.02562 * 20 19 17 22 22 C 1.53004 * 117.49759 * 243.62370 * 21 20 19 23 23 C 1.52996 * 117.50145 * 175.00164 * 21 20 19 24 24 H 0.97000 * 119.99748 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99798 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47054 * 59.99956 * 10 9 7 27 27 H 1.09004 * 109.47074 * 300.00470 * 10 9 7 28 28 H 1.08992 * 109.47056 * 59.99825 * 11 10 9 29 29 H 1.08996 * 109.46698 * 299.99941 * 11 10 9 30 30 H 1.08998 * 109.46879 * 59.99409 * 12 11 10 31 31 H 1.09001 * 109.46611 * 299.99697 * 12 11 10 32 32 H 0.97002 * 120.00387 * 0.02562 * 13 12 11 33 33 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 34 34 H 1.09000 * 109.47722 * 300.00830 * 16 14 13 35 35 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 36 36 H 1.08996 * 109.47366 * 299.99598 * 20 19 17 37 37 H 1.08992 * 109.47635 * 60.00246 * 20 19 17 38 38 H 1.09001 * 115.54850 * 29.32521 * 21 20 19 39 39 H 1.08996 * 117.49992 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.49660 * 145.01544 * 22 21 20 41 41 H 1.09007 * 117.49716 * 214.97980 * 23 21 20 42 42 H 1.08993 * 117.49910 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6165 -2.1912 -0.0011 12 6 6.3815 -3.5162 -0.0017 13 7 7.8218 -3.2485 -0.0023 14 6 8.6976 -4.2729 -0.0024 15 8 8.2933 -5.4163 -0.0025 16 6 10.1792 -3.9975 -0.0037 17 6 10.9328 -5.3026 -0.0042 18 8 10.3263 -6.3529 -0.0041 19 7 12.2805 -5.3026 -0.0047 20 6 13.0129 -6.5713 -0.0058 21 6 14.5172 -6.2917 -0.0056 22 6 15.3219 -6.7545 -1.2219 23 6 15.4588 -7.4919 0.1116 24 1 -0.4850 0.8401 0.0004 25 1 3.8647 -0.3620 -0.0007 26 1 3.8485 -3.0426 -0.8908 27 1 3.8492 -3.0422 0.8891 28 1 5.8797 -1.6196 0.8888 29 1 5.8797 -1.6196 -0.8910 30 1 6.1180 -4.0874 -0.8919 31 1 6.1182 -4.0881 0.8881 32 1 8.1451 -2.3339 -0.0019 33 1 10.4431 -3.4255 0.8859 34 1 10.4419 -3.4262 -0.8940 35 1 12.7654 -4.4625 -0.0044 36 1 12.7501 -7.1433 0.8839 37 1 12.7493 -7.1423 -0.8959 38 1 14.8228 -5.3633 0.4768 39 1 14.7797 -7.2584 -2.0220 40 1 16.1570 -6.1303 -1.5400 41 1 16.3841 -7.3530 0.6709 42 1 15.0067 -8.4806 0.1890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170556025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:32 Heat of formation + Delta-G solvation = -39.936113 kcal Electronic energy + Delta-G solvation = -20813.070095 eV Core-core repulsion = 17408.245215 eV Total energy + Delta-G solvation = -3404.824880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48702 -39.07997 -37.85818 -36.10129 -34.56444 -34.28330 -32.19870 -31.21917 -29.75419 -27.25436 -25.26582 -22.94560 -22.39651 -21.51016 -21.34215 -21.11465 -20.06885 -17.70234 -17.48898 -17.23756 -16.42164 -16.25960 -15.73598 -15.48781 -15.12598 -14.62187 -14.46106 -14.41235 -13.86173 -13.56890 -13.51077 -13.27489 -12.80347 -12.64400 -12.11294 -12.06780 -11.99891 -11.95892 -11.17996 -11.07144 -11.03057 -10.82077 -10.75064 -10.69923 -10.29929 -10.16123 -9.60546 -9.51268 -9.37684 -9.05198 -8.90294 -7.24278 -5.76789 -3.12898 2.37144 2.53042 2.64587 3.15921 3.33482 3.35650 3.37870 3.43958 4.08755 4.22942 4.34061 4.42191 4.58235 4.60246 4.69572 4.84260 4.89873 4.98502 5.09500 5.17408 5.22889 5.29306 5.34522 5.52036 5.53955 5.55966 5.60946 5.81005 5.94725 5.98741 6.07093 6.16008 6.42402 6.70056 6.72968 7.11667 7.43291 7.96486 7.99697 8.23783 8.42041 9.20846 9.92836 10.12387 11.41612 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.058895 B = 0.001951 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.309808 B =14351.608119 C =14718.791958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.159 3.841 11 C -0.141 4.141 12 C 0.124 3.876 13 N -0.732 5.732 14 C 0.508 3.492 15 O -0.497 6.497 16 C -0.165 4.165 17 C 0.511 3.489 18 O -0.491 6.491 19 N -0.735 5.735 20 C 0.152 3.848 21 C -0.171 4.171 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.054 -7.919 -0.309 35.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.179 4.179 12 C 0.000 4.000 13 N -0.386 5.386 14 C 0.291 3.709 15 O -0.369 6.369 16 C -0.208 4.208 17 C 0.295 3.705 18 O -0.362 6.362 19 N -0.390 5.390 20 C 0.028 3.972 21 C -0.189 4.189 22 C -0.214 4.214 23 C -0.208 4.208 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 34.018 -9.682 -0.309 35.371 hybrid contribution 1.039 2.312 0.020 2.535 sum 35.057 -7.371 -0.289 35.825 Atomic orbital electron populations 1.69708 1.05102 1.25816 1.57559 1.24689 0.95266 0.97237 1.02046 0.86509 0.79134 0.84921 0.77710 1.21090 1.21711 1.20414 1.19088 0.80602 0.94858 1.43011 0.89132 1.42684 1.04102 1.02150 1.91311 1.20509 0.87697 0.89492 0.99133 1.21985 0.97151 0.96252 1.02499 1.21317 0.78126 0.97782 1.02747 1.46035 1.07063 1.09040 1.76414 1.19901 0.87443 0.85635 0.77886 1.90876 1.79259 1.20539 1.46224 1.21591 0.94439 0.98180 1.06627 1.20033 0.82019 0.91079 0.77393 1.90888 1.67164 1.32622 1.45548 1.45953 1.06163 1.09393 1.77491 1.20846 0.87886 0.85923 1.02526 1.22462 0.92516 1.00026 1.03943 1.23108 1.02741 1.03811 0.91758 1.22966 1.00880 0.96463 1.00529 0.93049 0.80721 0.95125 0.95195 0.91381 0.91374 0.91205 0.91213 0.76813 0.86103 0.86098 0.76694 0.91051 0.91285 0.87158 0.88429 0.88571 0.88382 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.99 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.76 -18.05 5.41 -59.91 -0.32 -18.37 16 10 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 11 C -0.14 -1.97 5.44 -26.73 -0.15 -2.11 16 12 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 13 N -0.73 -7.64 5.56 -60.29 -0.33 -7.97 16 14 C 0.51 6.18 7.82 -10.99 -0.09 6.10 16 15 O -0.50 -8.87 14.18 -18.96 -0.27 -9.13 16 16 C -0.17 -1.17 6.19 -29.03 -0.18 -1.35 16 17 C 0.51 5.21 7.82 -10.98 -0.09 5.13 16 18 O -0.49 -7.89 14.18 -18.96 -0.27 -8.16 16 19 N -0.74 -4.73 5.56 -60.30 -0.33 -5.07 16 20 C 0.15 1.03 5.96 -4.04 -0.02 1.01 16 21 C -0.17 -0.76 5.85 -90.62 -0.53 -1.29 16 22 C -0.18 -0.74 10.18 -26.73 -0.27 -1.01 16 23 C -0.17 -0.71 10.25 -26.73 -0.27 -0.99 16 24 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 25 H 0.36 8.23 5.53 -40.82 -0.23 8.00 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.20 8.40 -40.82 -0.34 0.86 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 38 H 0.11 0.36 8.04 -51.93 -0.42 -0.06 16 39 H 0.10 0.44 8.03 -51.93 -0.42 0.02 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -38.94 355.15 -8.84 -47.78 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.82 Total: 4.22 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.90 Total: 2.88 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.22 Total: -60.21 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.54 Total: -17.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.94 -8.84 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170556025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.845 kcal (2) G-P(sol) polarization free energy of solvation -38.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds