Wall clock time and date at job start Fri Apr 10 2020 17:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47496 * 270.00490 * 3 2 1 5 5 H 1.48502 * 109.46930 * 30.00703 * 3 2 1 6 6 H 1.48503 * 109.46992 * 150.00033 * 3 2 1 7 7 C 1.37879 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00142 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99697 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47041 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47056 * 299.99894 * 11 10 9 13 13 N 1.46893 * 109.47175 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99978 * 155.00420 * 13 12 11 15 15 H 1.08993 * 109.47491 * 34.99848 * 14 13 12 16 16 C 1.53003 * 109.47133 * 155.00329 * 14 13 12 17 17 C 1.50697 * 109.46624 * 294.99247 * 16 14 13 18 18 N 1.34784 * 119.99774 * 180.02562 * 17 16 14 19 19 O 1.21283 * 120.00521 * 359.73045 * 17 16 14 20 20 C 1.50703 * 109.46824 * 274.99654 * 14 13 12 21 21 N 1.34773 * 120.00161 * 179.97438 * 20 14 13 22 22 O 1.21282 * 119.99754 * 0.02562 * 20 14 13 23 23 C 1.53003 * 109.47109 * 60.00147 * 12 11 10 24 24 C 1.53001 * 109.47041 * 299.99862 * 23 12 11 25 25 H 0.97000 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46791 * 60.00032 * 9 7 2 27 27 H 1.08998 * 109.46770 * 60.00285 * 10 9 7 28 28 H 1.09001 * 109.47116 * 300.00058 * 10 9 7 29 29 H 1.09002 * 109.47368 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47002 * 59.99652 * 11 10 9 31 31 H 1.08998 * 109.47425 * 300.00401 * 12 11 10 32 32 H 1.00909 * 111.00177 * 278.95018 * 13 12 11 33 33 H 1.09001 * 109.46782 * 175.00143 * 16 14 13 34 34 H 1.08993 * 109.47555 * 54.99700 * 16 14 13 35 35 H 0.96999 * 120.00044 * 179.72920 * 18 17 16 36 36 H 0.97005 * 119.99846 * 359.72750 * 18 17 16 37 37 H 0.97000 * 119.99793 * 0.02562 * 21 20 14 38 38 H 0.97003 * 120.00423 * 180.02562 * 21 20 14 39 39 H 1.09003 * 109.47186 * 59.99638 * 23 12 11 40 40 H 1.09001 * 109.47116 * 180.02562 * 23 12 11 41 41 H 1.08998 * 109.47741 * 300.00305 * 24 23 12 42 42 H 1.09002 * 109.47368 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5515 -2.6368 -0.0009 12 6 6.0615 -1.9156 -1.2503 13 7 7.5305 -1.9162 -1.2505 14 6 8.0567 -1.7967 -2.6169 15 1 7.4012 -1.1534 -3.2038 16 6 9.4603 -1.1894 -2.5715 17 6 9.3800 0.2223 -2.0504 18 7 10.5018 0.9587 -1.9239 19 8 8.3055 0.6978 -1.7500 20 6 8.1205 -3.1620 -3.2517 21 7 8.5745 -3.2980 -4.5134 22 8 7.7624 -4.1383 -2.6276 23 6 5.5516 -0.4731 -1.2504 24 6 4.0216 -0.4730 -1.2504 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.6578 -3.1506 -0.8907 28 1 3.6584 -3.1503 0.8892 29 1 5.9148 -3.6644 -0.0013 30 1 5.9148 -2.1228 0.8890 31 1 5.6982 -2.4295 -2.1402 32 1 7.8925 -1.1838 -0.6584 33 1 9.8858 -1.1826 -3.5750 34 1 10.0926 -1.7845 -1.9128 35 1 10.4497 1.8688 -1.5922 36 1 11.3612 0.5786 -2.1645 37 1 8.8606 -2.5171 -5.0127 38 1 8.6152 -4.1767 -4.9222 39 1 5.9149 0.0408 -0.3604 40 1 5.9146 0.0405 -2.1406 41 1 3.6582 -0.9869 -2.1403 42 1 3.6583 0.5547 -1.2501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:39 Heat of formation + Delta-G solvation = -125.520160 kcal Electronic energy + Delta-G solvation = -23552.993019 eV Core-core repulsion = 20144.456936 eV Total energy + Delta-G solvation = -3408.536083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34627 -39.98018 -39.52626 -36.38161 -34.90293 -34.56611 -34.29065 -32.25887 -31.60960 -29.45590 -26.47701 -25.46505 -23.54195 -22.34212 -21.64252 -21.07874 -20.41766 -18.77240 -18.53941 -18.22147 -17.98825 -17.25804 -16.99374 -16.48908 -16.01295 -15.65512 -15.43278 -15.06273 -14.95395 -14.77362 -14.59772 -14.39054 -14.17020 -13.71167 -13.56566 -13.19907 -12.86438 -12.58018 -12.47946 -12.15154 -11.93306 -11.82149 -11.64772 -11.28180 -11.16662 -10.95236 -10.87991 -10.71653 -10.60476 -10.55528 -10.53337 -9.26107 -8.31262 -6.33428 1.26647 1.31634 1.43684 1.67754 1.70368 2.30548 2.42919 2.77163 3.03933 3.23326 3.62488 3.86070 3.97011 4.07891 4.19426 4.29704 4.39054 4.45149 4.47588 4.52902 4.69464 4.74240 4.76099 4.85190 4.89238 5.01211 5.21558 5.25360 5.35159 5.42824 5.58639 5.70209 5.80534 5.94684 5.97245 6.05227 6.33149 6.43378 6.51888 6.61240 6.73645 7.31678 7.41459 7.48890 8.86015 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.005154 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.318273 B = 5431.526506 C = 6368.090902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.033 0.967 9 C 0.015 3.985 10 C -0.092 4.092 11 C -0.092 4.092 12 C 0.112 3.888 13 N -0.660 5.660 14 C 0.078 3.922 15 H 0.074 0.926 16 C -0.133 4.133 17 C 0.509 3.491 18 N -0.835 5.835 19 O -0.581 6.581 20 C 0.518 3.482 21 N -0.837 5.837 22 O -0.566 6.566 23 C -0.121 4.121 24 C -0.114 4.114 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.350 0.650 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.406 0.594 36 H 0.419 0.581 37 H 0.416 0.584 38 H 0.408 0.592 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.532 0.671 -10.946 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.051 0.949 9 C -0.004 4.004 10 C -0.131 4.131 11 C -0.130 4.130 12 C 0.001 3.999 13 N -0.292 5.292 14 C -0.037 4.037 15 H 0.092 0.908 16 C -0.173 4.173 17 C 0.294 3.706 18 N -0.399 5.399 19 O -0.461 6.461 20 C 0.301 3.699 21 N -0.403 5.403 22 O -0.443 6.443 23 C -0.160 4.160 24 C -0.152 4.152 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.237 0.763 36 H 0.251 0.749 37 H 0.247 0.753 38 H 0.240 0.760 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 29.461 -0.293 -10.243 31.193 hybrid contribution -0.348 1.890 -0.477 1.980 sum 29.113 1.597 -10.721 31.065 Atomic orbital electron populations 1.70056 1.08049 1.27881 1.53204 1.25842 0.95397 1.02779 0.94355 0.85804 0.78956 0.78980 0.78421 1.19709 1.22369 1.17659 1.21464 0.91762 0.92891 1.49425 0.94904 1.19111 0.93179 0.94379 0.93760 1.21333 0.94868 0.96578 1.00289 1.21371 0.94000 1.00330 0.97289 1.21265 0.86877 0.93519 0.98194 1.60362 1.06799 1.53081 1.08966 1.21248 0.97566 0.92675 0.92189 0.90788 1.21833 0.96175 0.92342 1.06915 1.20875 0.84137 0.88605 0.76973 1.43709 1.09613 1.18155 1.68444 1.90859 1.29974 1.73798 1.51474 1.20742 0.76065 0.90811 0.82263 1.43678 1.67809 1.14411 1.14421 1.90751 1.48223 1.41503 1.63818 1.22046 0.94712 0.97812 1.01447 1.21812 0.95255 0.98463 0.99694 0.92596 0.96269 0.93871 0.93198 0.91672 0.92346 0.92402 0.82808 0.83580 0.85808 0.76306 0.74935 0.75276 0.76036 0.92983 0.91917 0.93241 0.95215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 2 C 0.01 0.79 5.45 84.65 0.46 1.25 16 3 Si 0.95 48.89 24.37 68.60 1.67 50.57 16 4 H -0.27 -13.38 6.87 99.48 0.68 -12.70 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.25 -12.37 6.53 99.48 0.65 -11.72 16 7 C -0.52 -31.73 9.14 25.60 0.23 -31.50 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.01 0.74 1.69 -11.54 -0.02 0.72 16 10 C -0.09 -4.13 5.14 30.60 0.16 -3.98 16 11 C -0.09 -3.46 5.53 30.60 0.17 -3.29 16 12 C 0.11 3.91 2.11 44.92 0.09 4.01 16 13 N -0.66 -18.54 5.46 -473.31 -2.58 -21.12 16 14 C 0.08 1.59 1.83 44.17 0.08 1.67 16 15 H 0.07 1.67 6.92 -2.39 -0.02 1.65 16 16 C -0.13 -1.31 5.24 29.85 0.16 -1.15 16 17 C 0.51 7.28 7.57 87.65 0.66 7.94 16 18 N -0.84 -4.96 8.87 -173.52 -1.54 -6.50 16 19 O -0.58 -14.88 13.98 -3.04 -0.04 -14.92 16 20 C 0.52 11.23 7.17 87.66 0.63 11.86 16 21 N -0.84 -8.87 8.74 -173.53 -1.52 -10.38 16 22 O -0.57 -18.66 17.10 -3.04 -0.05 -18.71 16 23 C -0.12 -4.63 4.44 30.60 0.14 -4.49 16 24 C -0.11 -5.31 4.69 30.60 0.14 -5.16 16 25 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 26 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.18 7.63 -2.39 -0.02 2.16 16 32 H 0.35 9.72 6.25 -89.69 -0.56 9.16 16 33 H 0.15 0.13 7.43 -2.39 -0.02 0.11 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.41 2.57 8.93 -92.71 -0.83 1.74 16 36 H 0.42 -0.63 8.83 -92.70 -0.82 -1.45 16 37 H 0.42 1.23 8.19 -92.71 -0.76 0.47 16 38 H 0.41 3.79 8.93 -92.71 -0.83 2.97 16 39 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 40 H 0.06 2.27 6.72 -2.39 -0.02 2.26 16 41 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.03 1.45 3.27 -2.39 -0.01 1.44 16 Total: -1.00 -87.29 326.58 -3.64 -90.92 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -2.78 Total: 14.52 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 2.91 Total: -22.13 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -5.34 Total: -100.25 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.09 Total: -33.64 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.67 Total: 50.57 kcal Total: -87.29 -3.64 -90.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.595 kcal (2) G-P(sol) polarization free energy of solvation -87.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds