Wall clock time and date at job start Fri Apr 10 2020 17:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47150 * 270.00224 * 3 2 1 5 5 H 1.48500 * 109.47091 * 30.00076 * 3 2 1 6 6 H 1.48503 * 109.47269 * 150.00292 * 3 2 1 7 7 C 1.38813 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99393 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00314 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99942 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.88735 * 37.42296 * 10 9 7 12 12 C 1.55156 * 111.00176 * 273.54065 * 10 9 7 13 13 C 1.54324 * 102.94413 * 206.38750 * 12 10 9 14 14 N 1.47016 * 107.26889 * 22.19488 * 13 12 10 15 15 C 1.34777 * 125.64953 * 181.02636 * 14 13 12 16 16 O 1.21283 * 120.00463 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.74753 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 15 20 20 C 1.53011 * 109.46712 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.46921 * 180.02562 * 20 19 18 22 22 N 1.34777 * 120.00075 * 179.97438 * 21 20 19 23 23 O 1.21283 * 119.99803 * 0.02562 * 21 20 19 24 24 C 1.47426 * 108.70680 * 1.28811 * 14 13 12 25 25 H 0.97006 * 120.00401 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99879 * 359.97438 * 9 7 2 27 27 H 1.09003 * 110.71620 * 88.02511 * 12 10 9 28 28 H 1.08998 * 110.72257 * 324.75619 * 12 10 9 29 29 H 1.09004 * 109.87967 * 262.78223 * 13 12 10 30 30 H 1.08997 * 110.00987 * 141.68728 * 13 12 10 31 31 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 32 32 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 33 33 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 34 34 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 35 35 H 1.08995 * 109.47672 * 299.99669 * 19 18 17 36 36 H 1.09001 * 109.47109 * 60.00906 * 19 18 17 37 37 H 1.09003 * 109.46627 * 299.99937 * 20 19 18 38 38 H 1.08992 * 109.47177 * 60.00618 * 20 19 18 39 39 H 0.97000 * 119.99555 * 0.02562 * 22 21 20 40 40 H 0.96996 * 119.99887 * 179.97438 * 22 21 20 41 41 H 1.08999 * 110.36638 * 94.48082 * 24 14 13 42 42 H 1.09000 * 110.36899 * 216.80900 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.6057 -3.2120 -0.6195 12 6 4.3132 -2.9969 1.4447 13 6 5.5903 -3.8551 1.3258 14 7 6.3220 -3.3867 0.1398 15 6 7.4828 -3.8954 -0.3187 16 8 7.9999 -3.4279 -1.3111 17 6 8.1415 -5.0412 0.4055 18 6 9.4385 -5.4200 -0.3122 19 6 10.1075 -6.5828 0.4234 20 6 11.4043 -6.9620 -0.2948 21 6 12.0630 -8.1078 0.4294 22 7 13.2261 -8.6136 -0.0264 23 8 11.5459 -8.5753 1.4219 24 6 5.5790 -2.2642 -0.4613 25 1 -0.4851 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.4653 -3.6081 1.7541 28 1 4.4672 -2.1701 2.1380 29 1 5.3218 -4.9046 1.2052 30 1 6.2076 -3.7304 2.2155 31 1 8.3667 -4.7425 1.4294 32 1 7.4687 -5.8987 0.4169 33 1 9.2133 -5.7186 -1.3360 34 1 10.1112 -4.5625 -0.3236 35 1 10.3328 -6.2838 1.4471 36 1 9.4350 -7.4405 0.4350 37 1 11.1785 -7.2613 -1.3183 38 1 12.0771 -6.1046 -0.3068 39 1 13.6394 -8.2398 -0.8203 40 1 13.6502 -9.3508 0.4400 41 1 5.9643 -1.3135 -0.0927 42 1 5.6443 -2.3050 -1.5486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186919375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:48 Heat of formation + Delta-G solvation = -78.676115 kcal Electronic energy + Delta-G solvation = -21533.874952 eV Core-core repulsion = 18127.370179 eV Total energy + Delta-G solvation = -3406.504773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01574 -39.76795 -37.53428 -35.33109 -34.28236 -34.07388 -31.78712 -30.94463 -29.80672 -28.19752 -25.78765 -23.46600 -22.67592 -21.60139 -20.68062 -20.21897 -18.98105 -17.76937 -17.67927 -17.12908 -16.71026 -16.55667 -16.07119 -15.34647 -14.96351 -14.37556 -14.29035 -13.92568 -13.79315 -13.33418 -13.01551 -12.88862 -12.62887 -12.39021 -12.09718 -11.91300 -11.78981 -11.59075 -11.45648 -11.37261 -10.91943 -10.83293 -10.71629 -10.48096 -10.34906 -10.12625 -10.09859 -9.73144 -9.64809 -9.00325 -8.49230 -7.37425 -5.83755 -3.21431 2.25451 2.72568 3.01670 3.18686 3.34277 3.37581 3.42759 4.39202 4.45293 4.53371 4.62424 4.64584 4.92038 4.97262 5.02088 5.17507 5.21750 5.23206 5.39878 5.43986 5.49223 5.50040 5.54478 5.64528 5.73773 5.85831 5.88135 6.00295 6.11180 6.15069 6.26640 6.33234 6.45418 6.52077 6.78216 6.87772 7.66307 7.85106 7.90128 8.25859 8.34555 9.11282 9.83677 10.01943 11.33894 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.002382 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.041008 B =11751.240544 C =12042.596436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.176 3.824 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.525 3.475 16 O -0.549 6.549 17 C -0.135 4.135 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.142 4.142 21 C 0.515 3.485 22 N -0.860 5.860 23 O -0.544 6.544 24 C 0.096 3.904 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.402 0.598 40 H 0.400 0.600 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.768 -14.889 0.687 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.023 4.023 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.427 6.427 17 C -0.175 4.175 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.182 4.182 21 C 0.300 3.700 22 N -0.424 5.424 23 O -0.420 6.420 24 C -0.028 4.028 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.230 0.770 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.347 -14.884 0.741 28.545 hybrid contribution 0.918 1.096 -0.059 1.431 sum 25.265 -13.788 0.682 28.790 Atomic orbital electron populations 1.69695 1.05108 1.25993 1.56891 1.24676 0.95245 0.97278 1.01628 0.86565 0.79201 0.84907 0.77927 1.20917 1.21639 1.20284 1.19024 0.80162 0.94852 1.43799 0.89003 1.42609 1.04151 1.01510 1.89867 1.21320 0.89010 0.89827 0.93323 0.91001 1.23374 0.95102 0.99544 1.01516 1.22122 0.94000 0.98836 0.87311 1.48498 1.22512 1.34747 1.29164 1.20371 0.79527 0.84124 0.84609 1.90685 1.63309 1.62130 1.26621 1.21632 0.98035 0.97203 1.00633 1.21353 0.95264 0.98069 0.99516 1.21376 0.94874 0.98613 0.99512 1.21698 0.98765 0.96898 1.00883 1.20867 0.80552 0.84123 0.84447 1.43951 1.25588 1.39584 1.33264 1.90760 1.63658 1.61346 1.26252 1.22566 0.92330 0.88895 0.98987 0.92920 0.80334 0.90212 0.90642 0.91599 0.91887 0.88966 0.88858 0.91043 0.91130 0.91068 0.91020 0.88588 0.88624 0.77021 0.77011 0.91688 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.67 27.73 -169.99 -4.71 16.95 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 9 N -0.74 -16.81 5.08 -51.23 -0.26 -17.07 16 10 C 0.18 3.24 3.70 -65.66 -0.24 2.99 16 11 H 0.07 1.37 8.13 -51.93 -0.42 0.94 16 12 C -0.15 -2.38 6.64 -24.90 -0.17 -2.54 16 13 C 0.10 1.23 6.48 -3.07 -0.02 1.21 16 14 N -0.62 -8.90 3.32 -170.38 -0.57 -9.47 16 15 C 0.52 7.47 7.85 -10.98 -0.09 7.38 16 16 O -0.55 -9.71 16.24 5.55 0.09 -9.62 16 17 C -0.14 -1.32 4.89 -27.88 -0.14 -1.46 16 18 C -0.10 -0.92 4.50 -26.73 -0.12 -1.04 16 19 C -0.11 -0.82 4.50 -26.73 -0.12 -0.94 16 20 C -0.14 -0.83 5.70 -27.88 -0.16 -0.98 16 21 C 0.51 3.96 8.10 -10.98 -0.09 3.87 16 22 N -0.86 -3.40 8.87 31.22 0.28 -3.12 16 23 O -0.54 -6.73 16.82 5.55 0.09 -6.63 16 24 C 0.10 1.59 6.53 -2.41 -0.02 1.58 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 26 H 0.36 8.18 5.58 -40.82 -0.23 7.95 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.40 0.38 8.83 -40.82 -0.36 0.02 16 40 H 0.40 1.36 8.93 -40.82 -0.36 0.99 16 41 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 42 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -35.50 349.05 -7.32 -42.82 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.86 Total: 5.41 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.41 Total: 3.27 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.23 Total: -57.47 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.18 Total: -16.25 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.50 -7.32 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186919375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.855 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds