Wall clock time and date at job start Fri Apr 10 2020 17:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47150 * 270.00224 * 3 2 1 5 5 H 1.48500 * 109.47091 * 30.00076 * 3 2 1 6 6 H 1.48503 * 109.47269 * 150.00292 * 3 2 1 7 7 C 1.38813 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99393 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00314 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99942 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.88735 * 37.42296 * 10 9 7 12 12 C 1.55156 * 111.00176 * 273.54065 * 10 9 7 13 13 C 1.54324 * 102.94413 * 206.38750 * 12 10 9 14 14 N 1.47016 * 107.26889 * 22.19488 * 13 12 10 15 15 C 1.34777 * 125.64953 * 181.02636 * 14 13 12 16 16 O 1.21283 * 120.00463 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.74753 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 15 20 20 C 1.53011 * 109.46712 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.46921 * 180.02562 * 20 19 18 22 22 N 1.34777 * 120.00075 * 179.97438 * 21 20 19 23 23 O 1.21283 * 119.99803 * 0.02562 * 21 20 19 24 24 C 1.47426 * 108.70680 * 1.28811 * 14 13 12 25 25 H 0.97006 * 120.00401 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99879 * 359.97438 * 9 7 2 27 27 H 1.09003 * 110.71620 * 88.02511 * 12 10 9 28 28 H 1.08998 * 110.72257 * 324.75619 * 12 10 9 29 29 H 1.09004 * 109.87967 * 262.78223 * 13 12 10 30 30 H 1.08997 * 110.00987 * 141.68728 * 13 12 10 31 31 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 32 32 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 33 33 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 34 34 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 35 35 H 1.08995 * 109.47672 * 299.99669 * 19 18 17 36 36 H 1.09001 * 109.47109 * 60.00906 * 19 18 17 37 37 H 1.09003 * 109.46627 * 299.99937 * 20 19 18 38 38 H 1.08992 * 109.47177 * 60.00618 * 20 19 18 39 39 H 0.97000 * 119.99555 * 0.02562 * 22 21 20 40 40 H 0.96996 * 119.99887 * 179.97438 * 22 21 20 41 41 H 1.08999 * 110.36638 * 94.48082 * 24 14 13 42 42 H 1.09000 * 110.36899 * 216.80900 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.6057 -3.2120 -0.6195 12 6 4.3132 -2.9969 1.4447 13 6 5.5903 -3.8551 1.3258 14 7 6.3220 -3.3867 0.1398 15 6 7.4828 -3.8954 -0.3187 16 8 7.9999 -3.4279 -1.3111 17 6 8.1415 -5.0412 0.4055 18 6 9.4385 -5.4200 -0.3122 19 6 10.1075 -6.5828 0.4234 20 6 11.4043 -6.9620 -0.2948 21 6 12.0630 -8.1078 0.4294 22 7 13.2261 -8.6136 -0.0264 23 8 11.5459 -8.5753 1.4219 24 6 5.5790 -2.2642 -0.4613 25 1 -0.4851 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.4653 -3.6081 1.7541 28 1 4.4672 -2.1701 2.1380 29 1 5.3218 -4.9046 1.2052 30 1 6.2076 -3.7304 2.2155 31 1 8.3667 -4.7425 1.4294 32 1 7.4687 -5.8987 0.4169 33 1 9.2133 -5.7186 -1.3360 34 1 10.1112 -4.5625 -0.3236 35 1 10.3328 -6.2838 1.4471 36 1 9.4350 -7.4405 0.4350 37 1 11.1785 -7.2613 -1.3183 38 1 12.0771 -6.1046 -0.3068 39 1 13.6394 -8.2398 -0.8203 40 1 13.6502 -9.3508 0.4400 41 1 5.9643 -1.3135 -0.0927 42 1 5.6443 -2.3050 -1.5486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186919375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:47 Heat of formation + Delta-G solvation = -106.436244 kcal Electronic energy + Delta-G solvation = -21535.078721 eV Core-core repulsion = 18127.370179 eV Total energy + Delta-G solvation = -3407.708542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09875 -40.44068 -38.82732 -36.08393 -35.99847 -34.58797 -33.58076 -31.91770 -31.09305 -29.53268 -26.71685 -25.07859 -24.00555 -22.33371 -21.72252 -21.21036 -20.08235 -19.71734 -18.17269 -18.03747 -17.61490 -17.44262 -16.97607 -16.40216 -16.30656 -15.86275 -15.42535 -14.99778 -14.85617 -14.68732 -14.46483 -13.90424 -13.73087 -13.47902 -13.29425 -13.27961 -13.18009 -12.72056 -12.54110 -12.25305 -12.19918 -12.13351 -12.02127 -11.81893 -11.62847 -11.46463 -11.00943 -10.99546 -10.85442 -10.60044 -9.66682 -9.35353 -8.03068 -5.38155 1.38872 1.41674 1.48315 1.64190 1.70573 1.95848 2.47807 2.70742 3.26191 3.50755 3.52995 3.83090 3.87509 4.00306 4.06081 4.07276 4.20663 4.32204 4.42871 4.44400 4.52035 4.59872 4.71108 4.81508 4.85000 4.87468 4.91555 4.99252 5.09741 5.22846 5.24947 5.36230 5.39774 5.51328 5.75653 5.94715 6.20057 6.51966 6.56131 7.04613 7.15112 7.40967 7.79065 7.97857 9.17696 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.002382 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.041008 B =11751.240544 C =12042.596436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.230 4.230 8 H 0.062 0.938 9 N -0.744 5.744 10 C 0.167 3.833 11 H 0.060 0.940 12 C -0.147 4.147 13 C 0.108 3.892 14 N -0.617 5.617 15 C 0.520 3.480 16 O -0.589 6.589 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.099 4.099 20 C -0.139 4.139 21 C 0.510 3.490 22 N -0.842 5.842 23 O -0.598 6.598 24 C 0.104 3.896 25 H 0.258 0.742 26 H 0.366 0.634 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.418 0.582 40 H 0.404 0.596 41 H 0.065 0.935 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.592 -15.495 1.229 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.360 4.360 8 H 0.080 0.920 9 N -0.387 5.387 10 C 0.057 3.943 11 H 0.078 0.922 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.351 5.351 15 C 0.312 3.688 16 O -0.470 6.470 17 C -0.168 4.168 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.179 4.179 21 C 0.297 3.703 22 N -0.406 5.406 23 O -0.479 6.479 24 C -0.020 4.020 25 H 0.067 0.933 26 H 0.200 0.800 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.249 0.751 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 27.265 -15.538 1.269 31.407 hybrid contribution 0.077 1.164 -0.287 1.201 sum 27.342 -14.374 0.982 30.905 Atomic orbital electron populations 1.69867 1.07042 1.26687 1.59442 1.25462 0.96070 1.01131 1.02591 0.85465 0.78726 0.79918 0.77985 1.20762 1.22256 1.17580 1.18971 0.82095 0.93594 1.41385 0.91976 1.42565 1.02656 1.03357 1.90113 1.21473 0.89503 0.87862 0.95439 0.92154 1.23200 0.97053 0.99863 0.98623 1.22207 0.92483 0.99259 0.87509 1.48596 1.22722 1.34149 1.29620 1.21192 0.78942 0.84508 0.84179 1.90668 1.64272 1.63526 1.28531 1.21713 0.98262 0.95792 1.01020 1.21278 0.94857 0.98180 0.99170 1.21265 0.95594 0.97662 0.99204 1.21710 0.98104 0.96910 1.01176 1.21201 0.81056 0.84251 0.83813 1.43824 1.24370 1.38987 1.33385 1.90738 1.65310 1.63181 1.28688 1.22275 0.91349 0.90048 0.98339 0.93309 0.79995 0.90229 0.91174 0.89082 0.88893 0.86871 0.86984 0.91772 0.91695 0.91722 0.91799 0.86782 0.86729 0.75050 0.76533 0.91695 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.87 13.97 21.65 0.30 -61.57 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 3 Si 0.95 44.86 27.73 68.60 1.90 46.76 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 7 C -0.23 -12.67 10.47 84.03 0.88 -11.79 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.74 -33.48 5.08 -316.00 -1.61 -35.08 16 10 C 0.17 5.99 3.70 46.46 0.17 6.16 16 11 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 12 C -0.15 -4.24 6.64 31.78 0.21 -4.03 16 13 C 0.11 2.26 6.48 86.73 0.56 2.82 16 14 N -0.62 -16.40 3.32 -811.35 -2.70 -19.10 16 15 C 0.52 13.67 7.85 87.66 0.69 14.35 16 16 O -0.59 -20.17 16.24 -3.04 -0.05 -20.22 16 17 C -0.13 -2.12 4.89 29.85 0.15 -1.97 16 18 C -0.10 -1.50 4.50 30.59 0.14 -1.36 16 19 C -0.10 -1.32 4.50 30.60 0.14 -1.19 16 20 C -0.14 -1.28 5.70 29.85 0.17 -1.11 16 21 C 0.51 7.01 8.10 87.66 0.71 7.72 16 22 N -0.84 -4.88 8.87 -173.53 -1.54 -6.42 16 23 O -0.60 -14.41 16.82 -3.04 -0.05 -14.46 16 24 C 0.10 3.35 6.53 86.93 0.57 3.92 16 25 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 26 H 0.37 15.98 5.58 -92.71 -0.52 15.46 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.42 -0.35 8.83 -92.71 -0.82 -1.17 16 40 H 0.40 2.04 8.93 -92.71 -0.83 1.21 16 41 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 42 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 Total: -1.00 -79.23 349.05 -0.07 -79.30 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -1.19 Total: 20.29 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.85 Total: 10.49 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.54 Total: -122.16 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.10 Total: -34.68 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -79.23 -0.07 -79.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186919375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.136 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds