Wall clock time and date at job start Fri Apr 10 2020 17:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99553 * 2 1 4 4 H 1.48498 * 109.47552 * 269.99749 * 3 2 1 5 5 H 1.48502 * 109.47371 * 29.99903 * 3 2 1 6 6 H 1.48504 * 109.47161 * 149.99903 * 3 2 1 7 7 C 1.38804 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49508 * 34.93170 * 10 9 7 12 12 C 1.53044 * 109.49460 * 274.83576 * 10 9 7 13 13 C 1.53040 * 109.53662 * 178.68139 * 12 10 9 14 14 C 1.53197 * 109.31110 * 61.36306 * 13 12 10 15 15 N 1.46957 * 108.89063 * 305.44560 * 14 13 12 16 16 C 1.34780 * 120.64915 * 233.53185 * 15 14 13 17 17 O 1.21288 * 119.99578 * 179.81962 * 16 15 14 18 18 C 1.50697 * 120.00489 * 359.81927 * 16 15 14 19 19 C 1.52998 * 109.46984 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46654 * 179.97438 * 19 18 16 21 21 C 1.50709 * 109.47102 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00141 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99472 * 0.02562 * 21 20 19 24 24 C 1.46926 * 118.71783 * 53.35357 * 15 14 13 25 25 H 0.97004 * 120.00578 * 0.02562 * 1 2 3 26 26 H 0.97011 * 119.99728 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.45986 * 298.69942 * 12 10 9 28 28 H 1.09000 * 109.45849 * 58.66031 * 12 10 9 29 29 H 1.08995 * 109.49643 * 181.31582 * 13 12 10 30 30 H 1.08996 * 109.49892 * 301.41776 * 13 12 10 31 31 H 1.09001 * 109.58145 * 65.15551 * 14 13 12 32 32 H 1.08997 * 109.58684 * 185.43073 * 14 13 12 33 33 H 1.09004 * 109.46922 * 300.00225 * 18 16 15 34 34 H 1.08997 * 109.46776 * 60.00082 * 18 16 15 35 35 H 1.08992 * 109.47158 * 300.00067 * 19 18 16 36 36 H 1.09006 * 109.47022 * 60.00441 * 19 18 16 37 37 H 1.09004 * 109.47279 * 300.00242 * 20 19 18 38 38 H 1.08994 * 109.47253 * 60.00342 * 20 19 18 39 39 H 0.97003 * 119.99888 * 359.97438 * 22 21 20 40 40 H 0.96996 * 119.99816 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.58861 * 186.78362 * 24 15 14 42 42 H 1.08996 * 109.58519 * 66.50253 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9692 -3.5503 0.5907 12 6 2.4200 -4.0389 -1.4354 13 6 3.2138 -5.3473 -1.4327 14 6 2.3487 -6.4634 -0.8387 15 7 1.8736 -6.0428 0.4868 16 6 2.0734 -6.8228 1.5677 17 8 1.6791 -6.4626 2.6566 18 6 2.7865 -8.1425 1.4232 19 6 2.8811 -8.8233 2.7901 20 6 3.6046 -10.1635 2.6432 21 6 3.6973 -10.8345 3.9895 22 7 4.2992 -12.0348 4.1042 23 8 3.2302 -10.2942 4.9697 24 6 1.1800 -4.7536 0.6118 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 1.5076 -4.1689 -2.0173 28 1 3.0245 -3.2483 -1.8802 29 1 3.4912 -5.6066 -2.4543 30 1 4.1141 -5.2254 -0.8305 31 1 1.4938 -6.6484 -1.4892 32 1 2.9405 -7.3740 -0.7454 33 1 2.2322 -8.7817 0.7360 34 1 3.7896 -7.9725 1.0322 35 1 3.4357 -8.1840 3.4768 36 1 1.8781 -8.9933 3.1815 37 1 3.0497 -10.8027 1.9565 38 1 4.6076 -9.9939 2.2516 39 1 4.6725 -12.4671 3.3201 40 1 4.3585 -12.4668 4.9706 41 1 1.0014 -4.5353 1.6647 42 1 0.2288 -4.7975 0.0814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222111106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:10 Heat of formation + Delta-G solvation = -80.791109 kcal Electronic energy + Delta-G solvation = -22190.001434 eV Core-core repulsion = 18783.404948 eV Total energy + Delta-G solvation = -3406.596486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11417 -39.61903 -37.36434 -34.53742 -34.32701 -33.94106 -32.16871 -31.24333 -29.29473 -27.89613 -25.15815 -23.95912 -22.63912 -22.03057 -20.58423 -19.97744 -18.76695 -17.73364 -17.17455 -16.89401 -16.80458 -16.30264 -15.44910 -15.27093 -14.70310 -14.15644 -14.07556 -13.96937 -13.70773 -13.44083 -13.10569 -12.89349 -12.71107 -12.42601 -12.06747 -12.01595 -11.63737 -11.05479 -10.96136 -10.90578 -10.88785 -10.64091 -10.40383 -10.32595 -10.26683 -10.06397 -10.02776 -9.72426 -9.51056 -8.90013 -8.35615 -6.97530 -5.76432 -3.06050 2.36392 2.81558 3.05698 3.30898 3.44275 3.49734 3.51495 4.42303 4.52952 4.59855 4.75359 4.82051 4.91687 5.11859 5.18518 5.19432 5.27768 5.35197 5.38014 5.53843 5.59358 5.74275 5.77287 5.83944 5.96682 6.05258 6.18655 6.23499 6.27802 6.40401 6.43531 6.56612 6.73717 6.90007 6.97080 7.06110 7.63500 7.70309 7.96322 8.38208 8.42245 9.52652 10.08236 10.43229 11.46081 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029594 B = 0.002928 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.924187 B = 9562.085805 C = 9987.097654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.509 3.491 17 O -0.538 6.538 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.142 4.142 21 C 0.513 3.487 22 N -0.861 5.861 23 O -0.536 6.536 24 C 0.105 3.895 25 H 0.256 0.744 26 H 0.384 0.616 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.400 0.600 41 H 0.092 0.908 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -25.721 -2.233 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.015 4.015 15 N -0.342 5.342 16 C 0.297 3.703 17 O -0.415 6.415 18 C -0.178 4.178 19 C -0.130 4.130 20 C -0.182 4.182 21 C 0.298 3.702 22 N -0.425 5.425 23 O -0.412 6.412 24 C -0.017 4.017 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.228 0.772 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.915 -24.846 -1.098 26.420 hybrid contribution 0.444 0.507 -0.346 0.757 sum 9.359 -24.340 -1.444 26.117 Atomic orbital electron populations 1.69661 1.05104 1.25724 1.57509 1.24751 0.95533 0.97716 1.02888 0.86183 0.78690 0.83822 0.77451 1.21737 1.21737 1.20751 1.19201 0.90955 0.83901 1.42879 0.91179 1.42319 1.05814 0.99543 1.88564 1.20472 0.94659 0.86012 0.93100 0.93267 1.22282 0.99580 0.95260 1.00678 1.21936 0.98839 0.96109 1.00375 1.21753 0.98274 0.97582 0.83877 1.48154 1.57745 1.20528 1.07732 1.20595 0.79779 0.86052 0.83879 1.90733 1.51073 1.73814 1.25892 1.21692 1.01727 0.94737 0.99685 1.21103 1.02460 0.93599 0.95856 1.21705 1.03410 0.98381 0.94685 1.20799 0.76802 0.80945 0.91645 1.43941 1.62265 1.22166 1.14169 1.90802 1.46408 1.63985 1.39963 1.21976 0.94987 0.81462 1.03312 0.93460 0.78195 0.92495 0.91610 0.91386 0.91877 0.91491 0.90275 0.89039 0.88927 0.90251 0.90325 0.88719 0.88675 0.77166 0.77012 0.88962 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.21 5.12 -53.31 -0.27 -18.49 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.14 -2.32 5.47 -26.69 -0.15 -2.46 16 13 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 14 C 0.11 1.16 6.33 -3.69 -0.02 1.14 16 15 N -0.61 -8.86 2.98 -172.74 -0.51 -9.37 16 16 C 0.51 7.60 7.70 -10.99 -0.08 7.52 16 17 O -0.54 -10.60 15.40 5.55 0.09 -10.52 16 18 C -0.14 -1.29 4.05 -27.89 -0.11 -1.41 16 19 C -0.09 -0.97 3.79 -26.73 -0.10 -1.07 16 20 C -0.14 -0.91 5.70 -27.88 -0.16 -1.07 16 21 C 0.51 4.61 8.10 -10.98 -0.09 4.52 16 22 N -0.86 -4.06 8.87 31.22 0.28 -3.78 16 23 O -0.54 -7.81 16.82 5.56 0.09 -7.72 16 24 C 0.11 1.91 5.90 -3.71 -0.02 1.89 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.38 10.28 7.80 -40.82 -0.32 9.97 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.58 5.95 -51.93 -0.31 0.27 16 33 H 0.09 0.62 7.95 -51.93 -0.41 0.20 16 34 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 35 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.40 0.51 8.83 -40.82 -0.36 0.15 16 40 H 0.40 1.72 8.93 -40.82 -0.36 1.35 16 41 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -37.01 344.22 -7.50 -44.51 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.71 Total: 7.03 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.34 Total: 3.20 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.21 Total: -59.27 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.24 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.01 -7.50 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222111106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.282 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds