Wall clock time and date at job start Fri Apr 10 2020 17:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99553 * 2 1 4 4 H 1.48498 * 109.47552 * 269.99749 * 3 2 1 5 5 H 1.48502 * 109.47371 * 29.99903 * 3 2 1 6 6 H 1.48504 * 109.47161 * 149.99903 * 3 2 1 7 7 C 1.38804 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49508 * 34.93170 * 10 9 7 12 12 C 1.53044 * 109.49460 * 274.83576 * 10 9 7 13 13 C 1.53040 * 109.53662 * 178.68139 * 12 10 9 14 14 C 1.53197 * 109.31110 * 61.36306 * 13 12 10 15 15 N 1.46957 * 108.89063 * 305.44560 * 14 13 12 16 16 C 1.34780 * 120.64915 * 233.53185 * 15 14 13 17 17 O 1.21288 * 119.99578 * 179.81962 * 16 15 14 18 18 C 1.50697 * 120.00489 * 359.81927 * 16 15 14 19 19 C 1.52998 * 109.46984 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46654 * 179.97438 * 19 18 16 21 21 C 1.50709 * 109.47102 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00141 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99472 * 0.02562 * 21 20 19 24 24 C 1.46926 * 118.71783 * 53.35357 * 15 14 13 25 25 H 0.97004 * 120.00578 * 0.02562 * 1 2 3 26 26 H 0.97011 * 119.99728 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.45986 * 298.69942 * 12 10 9 28 28 H 1.09000 * 109.45849 * 58.66031 * 12 10 9 29 29 H 1.08995 * 109.49643 * 181.31582 * 13 12 10 30 30 H 1.08996 * 109.49892 * 301.41776 * 13 12 10 31 31 H 1.09001 * 109.58145 * 65.15551 * 14 13 12 32 32 H 1.08997 * 109.58684 * 185.43073 * 14 13 12 33 33 H 1.09004 * 109.46922 * 300.00225 * 18 16 15 34 34 H 1.08997 * 109.46776 * 60.00082 * 18 16 15 35 35 H 1.08992 * 109.47158 * 300.00067 * 19 18 16 36 36 H 1.09006 * 109.47022 * 60.00441 * 19 18 16 37 37 H 1.09004 * 109.47279 * 300.00242 * 20 19 18 38 38 H 1.08994 * 109.47253 * 60.00342 * 20 19 18 39 39 H 0.97003 * 119.99888 * 359.97438 * 22 21 20 40 40 H 0.96996 * 119.99816 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.58861 * 186.78362 * 24 15 14 42 42 H 1.08996 * 109.58519 * 66.50253 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9692 -3.5503 0.5907 12 6 2.4200 -4.0389 -1.4354 13 6 3.2138 -5.3473 -1.4327 14 6 2.3487 -6.4634 -0.8387 15 7 1.8736 -6.0428 0.4868 16 6 2.0734 -6.8228 1.5677 17 8 1.6791 -6.4626 2.6566 18 6 2.7865 -8.1425 1.4232 19 6 2.8811 -8.8233 2.7901 20 6 3.6046 -10.1635 2.6432 21 6 3.6973 -10.8345 3.9895 22 7 4.2992 -12.0348 4.1042 23 8 3.2302 -10.2942 4.9697 24 6 1.1800 -4.7536 0.6118 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 1.5076 -4.1689 -2.0173 28 1 3.0245 -3.2483 -1.8802 29 1 3.4912 -5.6066 -2.4543 30 1 4.1141 -5.2254 -0.8305 31 1 1.4938 -6.6484 -1.4892 32 1 2.9405 -7.3740 -0.7454 33 1 2.2322 -8.7817 0.7360 34 1 3.7896 -7.9725 1.0322 35 1 3.4357 -8.1840 3.4768 36 1 1.8781 -8.9933 3.1815 37 1 3.0497 -10.8027 1.9565 38 1 4.6076 -9.9939 2.2516 39 1 4.6725 -12.4671 3.3201 40 1 4.3585 -12.4668 4.9706 41 1 1.0014 -4.5353 1.6647 42 1 0.2288 -4.7975 0.0814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222111106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:09 Heat of formation + Delta-G solvation = -111.469408 kcal Electronic energy + Delta-G solvation = -22191.331745 eV Core-core repulsion = 18783.404948 eV Total energy + Delta-G solvation = -3407.926797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23942 -40.40181 -38.72944 -36.19337 -35.23722 -34.54929 -33.79873 -32.72400 -30.59422 -29.11194 -26.34830 -25.79909 -23.64653 -23.32996 -21.44400 -21.14296 -19.97944 -19.14128 -18.43310 -17.78799 -17.56100 -17.10526 -16.75792 -16.57320 -16.14459 -15.60849 -15.37625 -15.13962 -14.80161 -14.68069 -14.67224 -14.19221 -13.82107 -13.61647 -13.11078 -12.88226 -12.77438 -12.76133 -12.46902 -12.30988 -12.14332 -12.08707 -11.81398 -11.70443 -11.67776 -11.59320 -11.04048 -10.92034 -10.73145 -10.59313 -9.63099 -9.04332 -7.97425 -5.27207 1.44431 1.46991 1.55191 1.68752 1.73283 2.00721 2.54626 2.73623 3.35430 3.57968 3.82001 3.95810 4.02583 4.06767 4.12789 4.17738 4.18584 4.32613 4.38325 4.60071 4.66284 4.66770 4.73788 4.81377 4.85731 4.87170 4.95560 5.11050 5.20389 5.20918 5.41326 5.43570 5.45061 5.56339 5.61830 5.96224 6.24331 6.52658 6.56519 7.25080 7.29759 7.45390 8.03139 8.27172 9.26013 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029594 B = 0.002928 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.924187 B = 9562.085805 C = 9987.097654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.737 5.737 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.497 3.503 17 O -0.602 6.602 18 C -0.123 4.123 19 C -0.091 4.091 20 C -0.129 4.129 21 C 0.503 3.497 22 N -0.839 5.839 23 O -0.608 6.608 24 C 0.117 3.883 25 H 0.252 0.748 26 H 0.372 0.628 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.421 0.579 40 H 0.402 0.598 41 H 0.052 0.948 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -28.827 -5.019 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.058 3.942 11 H 0.047 0.953 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.288 3.712 17 O -0.483 6.483 18 C -0.162 4.162 19 C -0.130 4.130 20 C -0.168 4.168 21 C 0.290 3.710 22 N -0.403 5.403 23 O -0.489 6.489 24 C -0.008 4.008 25 H 0.060 0.940 26 H 0.204 0.796 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.253 0.747 40 H 0.233 0.767 41 H 0.071 0.929 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.513 -28.061 -3.963 30.588 hybrid contribution -0.307 1.375 0.548 1.512 sum 11.206 -26.685 -3.415 29.143 Atomic orbital electron populations 1.69821 1.06620 1.26123 1.59431 1.25589 0.96433 1.01160 1.03684 0.85127 0.77565 0.79385 0.77606 1.20888 1.22259 1.19698 1.19545 0.91258 0.85075 1.41206 0.90893 1.42525 1.05451 1.00887 1.88884 1.20644 0.93490 0.84715 0.95347 0.95340 1.22076 1.00014 0.97716 0.97093 1.21911 0.98066 0.93495 1.02870 1.22156 0.99349 0.98737 0.81485 1.48282 1.57164 1.18737 1.09752 1.21810 0.78983 0.87690 0.82741 1.90715 1.53624 1.75455 1.28468 1.21764 1.03413 0.91295 0.99713 1.20993 1.00493 0.95654 0.95857 1.21692 1.05364 0.96016 0.93755 1.21399 0.76050 0.81614 0.91941 1.43777 1.60396 1.20746 1.15348 1.90785 1.49747 1.66005 1.42353 1.21506 0.95250 0.83407 1.00598 0.93965 0.79585 0.92626 0.93722 0.87674 0.91873 0.89908 0.85065 0.84620 0.85054 0.94244 0.93908 0.84798 0.85021 0.74717 0.76716 0.92895 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.71 9.93 84.03 0.83 -12.87 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -38.76 5.12 -322.57 -1.65 -40.41 16 10 C 0.17 6.89 2.92 45.07 0.13 7.02 16 11 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 12 C -0.13 -4.20 5.47 30.62 0.17 -4.04 16 13 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 14 C 0.10 1.71 6.33 86.36 0.55 2.25 16 15 N -0.61 -16.71 2.98 -818.82 -2.44 -19.15 16 16 C 0.50 14.38 7.70 87.66 0.67 15.05 16 17 O -0.60 -25.06 15.40 -3.05 -0.05 -25.11 16 18 C -0.12 -1.79 4.05 29.85 0.12 -1.67 16 19 C -0.09 -1.82 3.79 30.59 0.12 -1.70 16 20 C -0.13 -1.15 5.70 29.85 0.17 -0.98 16 21 C 0.50 8.29 8.10 87.66 0.71 9.01 16 22 N -0.84 -5.73 8.87 -173.53 -1.54 -7.27 16 23 O -0.61 -18.44 16.82 -3.04 -0.05 -18.49 16 24 C 0.12 4.39 5.90 86.36 0.51 4.90 16 25 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.37 20.98 7.80 -92.70 -0.72 20.26 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 0.90 5.95 -2.39 -0.01 0.88 16 33 H 0.14 0.89 7.95 -2.38 -0.02 0.87 16 34 H 0.13 1.01 7.69 -2.39 -0.02 0.99 16 35 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 36 H 0.04 1.14 8.06 -2.38 -0.02 1.12 16 37 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 38 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.42 -0.64 8.83 -92.71 -0.82 -1.46 16 40 H 0.40 2.76 8.93 -92.71 -0.83 1.93 16 41 H 0.05 2.38 7.01 -2.39 -0.02 2.37 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -91.17 344.22 -0.11 -91.28 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -1.32 Total: 19.81 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.64 Total: 10.60 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.35 Total: -127.44 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.10 Total: -43.60 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -91.17 -0.11 -91.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222111106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.188 kcal (2) G-P(sol) polarization free energy of solvation -91.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds