Wall clock time and date at job start Fri Apr 10 2020 17:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47014 * 95.73222 * 3 2 1 5 5 H 1.48498 * 109.47123 * 215.73185 * 3 2 1 6 6 H 1.48500 * 109.46952 * 335.73557 * 3 2 1 7 7 C 1.38817 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99832 * 26.17145 * 7 2 1 9 9 N 1.36933 * 119.99734 * 206.17410 * 7 2 1 10 10 C 1.47421 * 125.64627 * 191.47400 * 9 7 2 11 11 C 1.54903 * 104.83603 * 204.09458 * 10 9 7 12 12 C 1.55159 * 101.58053 * 322.99282 * 11 10 9 13 13 H 1.08998 * 110.71951 * 276.95682 * 12 11 10 14 14 O 1.42906 * 110.71972 * 153.86596 * 12 11 10 15 15 C 1.42899 * 114.00243 * 150.00416 * 14 12 11 16 16 C 1.52990 * 109.47207 * 179.97438 * 15 14 12 17 17 C 1.53858 * 113.60357 * 274.16381 * 16 15 14 18 18 C 1.53563 * 86.91053 * 220.32364 * 17 16 15 19 19 C 1.53376 * 87.50638 * 25.14841 * 18 17 16 20 20 O 1.43331 * 114.60980 * 141.14170 * 18 17 16 21 21 C 1.44892 * 104.66638 * 106.45544 * 20 18 17 22 22 C 1.54945 * 101.79071 * 35.66788 * 21 20 18 23 23 O 1.42948 * 114.72449 * 268.86948 * 18 17 16 24 24 C 1.47019 * 125.65008 * 11.17295 * 9 7 2 25 25 H 0.97001 * 120.00637 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.37140 * 322.93884 * 10 9 7 27 27 H 1.09008 * 110.36574 * 85.25749 * 10 9 7 28 28 H 1.08998 * 111.00518 * 81.06478 * 11 10 9 29 29 H 1.08997 * 111.00732 * 204.91876 * 11 10 9 30 30 H 1.09004 * 109.46765 * 299.99710 * 15 14 12 31 31 H 1.08993 * 109.46932 * 59.99282 * 15 14 12 32 32 H 1.08996 * 112.84777 * 45.32903 * 16 15 14 33 33 H 1.09005 * 113.62817 * 334.81931 * 17 16 15 34 34 H 1.08996 * 113.62802 * 105.77455 * 17 16 15 35 35 H 1.09004 * 113.63553 * 220.33486 * 19 18 17 36 36 H 1.09003 * 113.63754 * 89.37344 * 19 18 17 37 37 H 1.08997 * 110.96137 * 277.54831 * 21 20 18 38 38 H 1.09000 * 110.99689 * 153.81054 * 21 20 18 39 39 H 1.09000 * 110.69170 * 206.27888 * 22 21 20 40 40 H 1.09004 * 110.68949 * 83.09219 * 22 21 20 41 41 H 1.09004 * 109.88458 * 298.39005 * 24 9 7 42 42 H 1.09001 * 109.88388 * 59.56316 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6187 1.9765 1.3931 5 1 3.4819 1.4782 -0.8176 6 1 1.3922 2.6846 -0.5754 7 6 2.0103 -1.2022 0.0005 8 1 1.5533 -2.0897 -0.4116 9 7 3.2743 -1.2626 0.5237 10 6 4.2106 -2.3922 0.3796 11 6 5.1692 -2.2696 1.5902 12 6 5.3228 -0.7304 1.7113 13 1 6.0800 -0.3628 1.0188 14 8 5.6444 -0.3584 3.0531 15 6 6.4344 0.8281 3.1540 16 6 6.7159 1.1296 4.6272 17 6 5.6042 1.9426 5.3130 18 6 6.7238 2.7227 6.0174 19 6 7.6347 2.3448 4.8427 20 8 6.4777 4.1281 6.1534 21 6 6.1705 4.3127 7.5573 22 6 7.1112 3.2788 8.2258 23 8 7.1214 2.1872 7.2818 24 6 3.9247 -0.2093 1.3168 25 1 -0.4851 0.8400 -0.0004 26 1 3.6717 -3.3389 0.4167 27 1 4.7663 -2.3075 -0.5544 28 1 4.7184 -2.6892 2.4895 29 1 6.1282 -2.7425 1.3787 30 1 7.3768 0.6830 2.6258 31 1 5.8936 1.6634 2.7093 32 1 7.0209 0.2468 5.1891 33 1 5.0169 2.5484 4.6229 34 1 4.9873 1.3534 5.9915 35 1 8.6480 2.0785 5.1435 36 1 7.6101 3.0620 4.0223 37 1 5.1258 4.0787 7.7619 38 1 6.4118 5.3254 7.8800 39 1 6.7077 2.9546 9.1850 40 1 8.1126 3.6917 8.3479 41 1 4.0199 0.6983 0.7206 42 1 3.3400 -0.0065 2.2140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224631544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:15 Heat of formation + Delta-G solvation = -70.740744 kcal Electronic energy + Delta-G solvation = -22914.257476 eV Core-core repulsion = 19475.804055 eV Total energy + Delta-G solvation = -3438.453421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15534 -38.72605 -37.39810 -35.68817 -35.32038 -32.31635 -30.09942 -29.51006 -28.10327 -26.93914 -26.07531 -24.11909 -23.62792 -22.22952 -20.82078 -20.32920 -19.62808 -17.52944 -17.06532 -16.84419 -16.55284 -16.11838 -15.75171 -15.38005 -14.80400 -14.58174 -14.17512 -13.89919 -13.40807 -13.16293 -13.12214 -12.94558 -12.59109 -12.52362 -12.36107 -12.01972 -11.92006 -11.59728 -11.30136 -11.12487 -11.00332 -10.72580 -10.70904 -10.52315 -10.50598 -10.18185 -9.99084 -9.68866 -9.40545 -9.01339 -8.60781 -7.08222 -5.91877 -3.15962 3.07471 3.38143 3.47088 3.48151 3.51895 3.77390 4.17348 4.33367 4.45913 4.53581 4.58811 4.66829 4.74572 4.89946 4.97418 5.12007 5.19046 5.23546 5.28370 5.36838 5.43256 5.47172 5.49989 5.53520 5.54769 5.59969 5.69216 5.86197 5.93504 5.96420 6.11148 6.20183 6.28927 6.41700 6.55170 6.68536 6.82313 6.87637 7.56278 7.69595 8.32779 8.85645 9.72919 10.19829 11.24237 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.004088 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.710702 B = 6847.861505 C = 7693.431601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.304 1.304 7 C -0.242 4.242 8 H 0.096 0.904 9 N -0.608 5.608 10 C 0.134 3.866 11 C -0.126 4.126 12 C 0.077 3.923 13 H 0.066 0.934 14 O -0.372 6.372 15 C 0.071 3.929 16 C -0.098 4.098 17 C -0.147 4.147 18 C 0.230 3.770 19 C -0.128 4.128 20 O -0.363 6.363 21 C 0.014 3.986 22 C 0.019 3.981 23 O -0.359 6.359 24 C 0.100 3.900 25 H 0.262 0.738 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.675 6.290 14.677 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.232 1.232 7 C -0.369 4.369 8 H 0.114 0.886 9 N -0.336 5.336 10 C 0.009 3.991 11 C -0.164 4.164 12 C 0.019 3.981 13 H 0.084 0.916 14 O -0.291 6.291 15 C -0.006 4.006 16 C -0.116 4.116 17 C -0.185 4.185 18 C 0.153 3.847 19 C -0.166 4.166 20 O -0.284 6.284 21 C -0.062 4.062 22 C -0.057 4.057 23 O -0.280 6.280 24 C -0.026 4.026 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.425 6.215 14.666 23.608 hybrid contribution 0.429 1.388 -0.154 1.461 sum 17.854 7.603 14.512 24.231 Atomic orbital electron populations 1.69899 1.05469 1.26520 1.52947 1.24791 0.95038 0.97309 1.00659 0.86999 0.78760 0.85107 0.77672 1.21286 1.20972 1.23184 1.18679 0.86505 0.96338 1.35371 0.88597 1.44703 1.13636 1.15025 1.60262 1.21599 0.90676 0.92534 0.94307 1.22859 0.99626 0.93694 1.00262 1.23158 0.96090 0.96069 0.82833 0.91613 1.87913 1.71764 1.42740 1.26659 1.22456 0.94363 0.88358 0.95386 1.22269 0.96399 0.97325 0.95634 1.23841 0.97038 0.98081 0.99528 1.24445 0.95972 0.78585 0.85714 1.23456 0.98935 0.97344 0.96843 1.89230 1.89634 1.23952 1.25548 1.24397 0.99765 1.01143 0.80935 1.24258 1.00307 0.87181 0.93945 1.88834 1.88923 1.32096 1.18120 1.22074 0.92464 0.92392 0.95641 0.92775 0.92737 0.95688 0.90185 0.91165 0.93125 0.93139 0.87599 0.87977 0.89856 0.89697 0.88001 0.90383 0.87401 0.88082 0.90518 0.95670 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.57 13.97 55.49 0.78 -27.79 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 3 Si 0.88 23.48 24.29 -169.99 -4.13 19.35 16 4 H -0.29 -7.39 6.72 56.52 0.38 -7.02 16 5 H -0.28 -7.38 6.74 56.52 0.38 -7.00 16 6 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 7 C -0.24 -7.11 10.57 -15.06 -0.16 -7.27 16 8 H 0.10 2.92 8.06 -52.49 -0.42 2.50 16 9 N -0.61 -15.43 3.28 -170.07 -0.56 -15.99 16 10 C 0.13 2.71 7.23 -2.53 -0.02 2.69 16 11 C -0.13 -2.15 6.81 -24.58 -0.17 -2.32 16 12 C 0.08 1.41 3.44 -24.89 -0.09 1.32 16 13 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 14 O -0.37 -6.47 10.08 -35.23 -0.35 -6.82 16 15 C 0.07 1.00 5.60 37.15 0.21 1.21 16 16 C -0.10 -1.22 3.99 -89.73 -0.36 -1.58 16 17 C -0.15 -1.93 7.39 -25.99 -0.19 -2.12 16 18 C 0.23 2.75 1.84 -26.25 -0.05 2.71 16 19 C -0.13 -1.39 7.39 -26.09 -0.19 -1.59 16 20 O -0.36 -4.34 11.42 -59.03 -0.67 -5.02 16 21 C 0.01 0.11 7.96 38.18 0.30 0.42 16 22 C 0.02 0.15 8.08 38.18 0.31 0.46 16 23 O -0.36 -4.18 11.28 -59.03 -0.67 -4.84 16 24 C 0.10 2.33 4.72 -3.06 -0.01 2.31 16 25 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.62 8.11 -51.93 -0.42 0.19 16 31 H 0.05 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.41 7.92 -51.93 -0.41 1.00 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.63 3.73 -51.93 -0.19 0.44 16 42 H 0.05 1.30 7.75 -51.93 -0.40 0.89 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -34.02 332.55 -8.02 -42.04 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.92 Total: -2.71 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.51 Total: -3.23 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.22 Total: -43.78 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.70 Total: -16.68 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.13 Total: 19.35 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.02 -8.02 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224631544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds