Wall clock time and date at job start Fri Apr 10 2020 17:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47014 * 95.73222 * 3 2 1 5 5 H 1.48498 * 109.47123 * 215.73185 * 3 2 1 6 6 H 1.48500 * 109.46952 * 335.73557 * 3 2 1 7 7 C 1.38817 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99832 * 26.17145 * 7 2 1 9 9 N 1.36933 * 119.99734 * 206.17410 * 7 2 1 10 10 C 1.47421 * 125.64627 * 191.47400 * 9 7 2 11 11 C 1.54903 * 104.83603 * 204.09458 * 10 9 7 12 12 C 1.55159 * 101.58053 * 322.99282 * 11 10 9 13 13 H 1.08998 * 110.71951 * 276.95682 * 12 11 10 14 14 O 1.42906 * 110.71972 * 153.86596 * 12 11 10 15 15 C 1.42899 * 114.00243 * 150.00416 * 14 12 11 16 16 C 1.52990 * 109.47207 * 179.97438 * 15 14 12 17 17 C 1.53858 * 113.60357 * 274.16381 * 16 15 14 18 18 C 1.53563 * 86.91053 * 220.32364 * 17 16 15 19 19 C 1.53376 * 87.50638 * 25.14841 * 18 17 16 20 20 O 1.43331 * 114.60980 * 141.14170 * 18 17 16 21 21 C 1.44892 * 104.66638 * 106.45544 * 20 18 17 22 22 C 1.54945 * 101.79071 * 35.66788 * 21 20 18 23 23 O 1.42948 * 114.72449 * 268.86948 * 18 17 16 24 24 C 1.47019 * 125.65008 * 11.17295 * 9 7 2 25 25 H 0.97001 * 120.00637 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.37140 * 322.93884 * 10 9 7 27 27 H 1.09008 * 110.36574 * 85.25749 * 10 9 7 28 28 H 1.08998 * 111.00518 * 81.06478 * 11 10 9 29 29 H 1.08997 * 111.00732 * 204.91876 * 11 10 9 30 30 H 1.09004 * 109.46765 * 299.99710 * 15 14 12 31 31 H 1.08993 * 109.46932 * 59.99282 * 15 14 12 32 32 H 1.08996 * 112.84777 * 45.32903 * 16 15 14 33 33 H 1.09005 * 113.62817 * 334.81931 * 17 16 15 34 34 H 1.08996 * 113.62802 * 105.77455 * 17 16 15 35 35 H 1.09004 * 113.63553 * 220.33486 * 19 18 17 36 36 H 1.09003 * 113.63754 * 89.37344 * 19 18 17 37 37 H 1.08997 * 110.96137 * 277.54831 * 21 20 18 38 38 H 1.09000 * 110.99689 * 153.81054 * 21 20 18 39 39 H 1.09000 * 110.69170 * 206.27888 * 22 21 20 40 40 H 1.09004 * 110.68949 * 83.09219 * 22 21 20 41 41 H 1.09004 * 109.88458 * 298.39005 * 24 9 7 42 42 H 1.09001 * 109.88388 * 59.56316 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6187 1.9765 1.3931 5 1 3.4819 1.4782 -0.8176 6 1 1.3922 2.6846 -0.5754 7 6 2.0103 -1.2022 0.0005 8 1 1.5533 -2.0897 -0.4116 9 7 3.2743 -1.2626 0.5237 10 6 4.2106 -2.3922 0.3796 11 6 5.1692 -2.2696 1.5902 12 6 5.3228 -0.7304 1.7113 13 1 6.0800 -0.3628 1.0188 14 8 5.6444 -0.3584 3.0531 15 6 6.4344 0.8281 3.1540 16 6 6.7159 1.1296 4.6272 17 6 5.6042 1.9426 5.3130 18 6 6.7238 2.7227 6.0174 19 6 7.6347 2.3448 4.8427 20 8 6.4777 4.1281 6.1534 21 6 6.1705 4.3127 7.5573 22 6 7.1112 3.2788 8.2258 23 8 7.1214 2.1872 7.2818 24 6 3.9247 -0.2093 1.3168 25 1 -0.4851 0.8400 -0.0004 26 1 3.6717 -3.3389 0.4167 27 1 4.7663 -2.3075 -0.5544 28 1 4.7184 -2.6892 2.4895 29 1 6.1282 -2.7425 1.3787 30 1 7.3768 0.6830 2.6258 31 1 5.8936 1.6634 2.7093 32 1 7.0209 0.2468 5.1891 33 1 5.0169 2.5484 4.6229 34 1 4.9873 1.3534 5.9915 35 1 8.6480 2.0785 5.1435 36 1 7.6101 3.0620 4.0223 37 1 5.1258 4.0787 7.7619 38 1 6.4118 5.3254 7.8800 39 1 6.7077 2.9546 9.1850 40 1 8.1126 3.6917 8.3479 41 1 4.0199 0.6983 0.7206 42 1 3.3400 -0.0065 2.2140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224631544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:14 Heat of formation + Delta-G solvation = -95.068141 kcal Electronic energy + Delta-G solvation = -22915.312391 eV Core-core repulsion = 19475.804055 eV Total energy + Delta-G solvation = -3439.508336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.97964 -40.13810 -38.55000 -37.08241 -36.13001 -34.42531 -31.62845 -30.61520 -29.60833 -28.15212 -27.00036 -26.07521 -24.28384 -23.21106 -22.49686 -21.93358 -20.58972 -19.05999 -18.38077 -17.96521 -17.69834 -17.58084 -16.86655 -16.29173 -16.06558 -15.88326 -15.62509 -15.13050 -14.89232 -14.74460 -14.30087 -14.09021 -13.97611 -13.74679 -13.52137 -13.45251 -13.12388 -12.91593 -12.77070 -12.64451 -12.44578 -12.21223 -12.12004 -11.80996 -11.67490 -11.59348 -11.29441 -11.20533 -10.88307 -10.55072 -10.42525 -9.18244 -8.23027 -5.43237 1.24341 1.29432 1.39834 2.31620 2.36531 2.49195 2.74843 2.95937 3.32704 3.41920 3.55489 3.62764 3.68252 3.71221 3.82397 3.96844 4.04622 4.08568 4.11453 4.33385 4.40260 4.44682 4.50516 4.54888 4.58780 4.61968 4.67100 4.70612 4.78188 4.82880 4.88468 4.94241 4.99258 5.00673 5.04152 5.24759 5.32975 5.60181 6.04108 6.08715 6.26575 6.69917 7.50125 8.04884 8.96538 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.004088 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.710702 B = 6847.861505 C = 7693.431601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.038 4.038 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.305 1.305 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.629 5.629 10 C 0.126 3.874 11 C -0.111 4.111 12 C 0.087 3.913 13 H 0.094 0.906 14 O -0.384 6.384 15 C 0.065 3.935 16 C -0.093 4.093 17 C -0.159 4.159 18 C 0.231 3.769 19 C -0.117 4.117 20 O -0.384 6.384 21 C 0.007 3.993 22 C 0.015 3.985 23 O -0.378 6.378 24 C 0.094 3.906 25 H 0.262 0.738 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.017 0.983 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.082 6.839 15.503 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.233 4.233 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.234 1.234 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.002 3.998 11 C -0.149 4.149 12 C 0.029 3.971 13 H 0.112 0.888 14 O -0.303 6.303 15 C -0.012 4.012 16 C -0.112 4.112 17 C -0.197 4.197 18 C 0.153 3.847 19 C -0.154 4.154 20 O -0.305 6.305 21 C -0.069 4.069 22 C -0.061 4.061 23 O -0.299 6.299 24 C -0.032 4.032 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.034 0.966 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 20.883 6.753 15.508 26.874 hybrid contribution -0.670 1.155 -0.325 1.374 sum 20.213 7.908 15.183 26.488 Atomic orbital electron populations 1.70008 1.06982 1.27201 1.55521 1.25427 0.95711 1.00518 1.01630 0.85996 0.77647 0.80955 0.77880 1.20819 1.19732 1.23375 1.18706 0.88374 0.95428 1.34021 0.91180 1.44851 1.13390 1.17214 1.60209 1.21885 0.90539 0.90656 0.96749 1.22816 1.00776 0.93059 0.98286 1.23062 0.93490 0.96628 0.83957 0.88771 1.87912 1.72410 1.43975 1.26011 1.22694 0.94954 0.86867 0.96638 1.22228 0.96515 0.97841 0.94582 1.23884 0.97594 0.98570 0.99699 1.24346 0.95400 0.78590 0.86319 1.23403 0.99211 0.96309 0.96506 1.89202 1.89773 1.23749 1.27749 1.24669 0.99995 1.02899 0.79312 1.24536 1.01318 0.86244 0.93953 1.88805 1.88879 1.33701 1.18534 1.22165 0.95200 0.91945 0.93855 0.92868 0.92774 0.93724 0.90965 0.86583 0.90243 0.94115 0.87611 0.89365 0.91040 0.88049 0.87391 0.90458 0.84706 0.86014 0.88918 0.96606 0.96175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.95 13.97 21.65 0.30 -61.65 16 2 C -0.04 -2.35 5.43 84.86 0.46 -1.89 16 3 Si 0.94 49.48 24.29 68.60 1.67 51.15 16 4 H -0.28 -14.34 6.72 99.48 0.67 -13.68 16 5 H -0.27 -13.53 6.74 99.48 0.67 -12.86 16 6 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 7 C -0.24 -14.19 10.57 84.04 0.89 -13.30 16 8 H 0.07 4.43 8.06 -2.91 -0.02 4.41 16 9 N -0.63 -31.65 3.28 -691.97 -2.27 -33.92 16 10 C 0.13 4.81 7.23 86.85 0.63 5.44 16 11 C -0.11 -3.42 6.81 31.98 0.22 -3.21 16 12 C 0.09 2.95 3.44 31.79 0.11 3.06 16 13 H 0.09 2.69 7.82 -2.39 -0.02 2.68 16 14 O -0.38 -12.49 10.08 -148.98 -1.50 -13.99 16 15 C 0.06 1.67 5.60 71.98 0.40 2.07 16 16 C -0.09 -2.18 3.99 -10.22 -0.04 -2.22 16 17 C -0.16 -4.16 7.39 31.07 0.23 -3.93 16 18 C 0.23 5.24 1.84 30.91 0.06 5.29 16 19 C -0.12 -2.28 7.39 31.01 0.23 -2.05 16 20 O -0.38 -8.68 11.42 -126.23 -1.44 -10.12 16 21 C 0.01 0.10 7.96 72.65 0.58 0.68 16 22 C 0.01 0.20 8.08 72.65 0.59 0.79 16 23 O -0.38 -8.19 11.28 -126.23 -1.42 -9.61 16 24 C 0.09 4.29 4.72 86.73 0.41 4.70 16 25 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 31 H 0.04 1.13 7.87 -2.39 -0.02 1.11 16 32 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 2.49 7.92 -2.38 -0.02 2.47 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.02 0.78 3.73 -2.38 -0.01 0.77 16 42 H 0.02 1.04 7.75 -2.39 -0.02 1.02 16 Total: -1.00 -75.28 332.55 1.00 -74.27 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.91 Total: 8.44 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.76 Total: -4.57 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -1.97 Total: -95.57 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -4.37 Total: -33.72 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.67 Total: 51.15 kcal Total: -75.28 1.00 -74.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224631544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.794 kcal (2) G-P(sol) polarization free energy of solvation -75.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds