Wall clock time and date at job start Fri Apr 10 2020 17:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99776 * 2 1 4 4 H 1.48502 * 109.47152 * 270.00183 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00306 * 3 2 1 7 7 C 1.37873 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00332 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99915 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.50433 * 324.99954 * 14 13 11 16 16 C 1.53123 * 109.50236 * 85.07876 * 14 13 11 17 17 C 1.53203 * 109.11533 * 177.59205 * 16 14 13 18 18 C 1.53030 * 109.30370 * 302.37368 * 17 16 14 19 19 N 1.46846 * 109.52435 * 59.17688 * 18 17 16 20 20 C 1.46902 * 111.00121 * 174.16395 * 19 18 17 21 21 C 1.50702 * 109.46821 * 294.21263 * 20 19 18 22 22 N 1.34777 * 119.99834 * 180.02562 * 21 20 19 23 23 O 1.21277 * 120.00047 * 359.97438 * 21 20 19 24 24 C 1.46856 * 111.19871 * 298.25760 * 19 18 17 25 25 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47283 * 60.00498 * 9 7 2 27 27 H 1.08998 * 109.46921 * 300.00071 * 9 7 2 28 28 H 1.08996 * 109.47379 * 60.00271 * 10 9 7 29 29 H 1.08998 * 109.47023 * 299.99633 * 10 9 7 30 30 H 0.96995 * 119.99935 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.52349 * 297.53842 * 16 14 13 32 32 H 1.08997 * 109.52263 * 57.72804 * 16 14 13 33 33 H 1.08997 * 109.49417 * 182.41991 * 17 16 14 34 34 H 1.09007 * 109.52297 * 62.34418 * 17 16 14 35 35 H 1.09004 * 109.46094 * 299.16423 * 18 17 16 36 36 H 1.08994 * 109.46717 * 179.19390 * 18 17 16 37 37 H 1.08998 * 109.46964 * 54.20591 * 20 19 18 38 38 H 1.08994 * 109.46972 * 174.21048 * 20 19 18 39 39 H 0.97002 * 119.99636 * 359.97438 * 22 21 20 40 40 H 0.96995 * 120.00251 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46462 * 301.73144 * 24 19 18 42 42 H 1.09002 * 109.45930 * 181.75412 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1344 -0.0018 14 6 1.4332 -7.4031 -0.0019 15 1 0.5226 -7.2976 0.5879 16 6 1.0697 -7.7835 -1.4399 17 6 0.3575 -9.1399 -1.4353 18 6 1.2664 -10.1863 -0.7866 19 7 1.5846 -9.7760 0.5870 20 6 2.3414 -10.8225 1.2871 21 6 1.4704 -12.0397 1.4632 22 7 1.9570 -13.1324 2.0842 23 8 0.3313 -12.0355 1.0471 24 6 2.3110 -8.4999 0.6053 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 3.1357 -6.1344 -0.0015 31 1 0.4094 -7.0256 -1.8613 32 1 1.9775 -7.8510 -2.0393 33 1 0.1341 -9.4369 -2.4599 34 1 -0.5704 -9.0622 -0.8685 35 1 2.1879 -10.2738 -1.3622 36 1 0.7565 -11.1494 -0.7690 37 1 3.2218 -11.0875 0.7016 38 1 2.6525 -10.4538 2.2644 39 1 2.8680 -13.1355 2.4174 40 1 1.3963 -13.9157 2.1979 41 1 3.2276 -8.5953 0.0231 42 1 2.5597 -8.2382 1.6338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324742254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:36 Heat of formation + Delta-G solvation = -84.564749 kcal Electronic energy + Delta-G solvation = -22139.222553 eV Core-core repulsion = 18732.462430 eV Total energy + Delta-G solvation = -3406.760123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33735 -39.37765 -38.02478 -34.62802 -34.05450 -33.40540 -32.78072 -31.05027 -29.54165 -27.84596 -25.66190 -23.58816 -23.08328 -21.49318 -20.74410 -20.10996 -19.42117 -17.81791 -17.19180 -16.79000 -16.22077 -15.82174 -15.61774 -15.22926 -14.88419 -14.64475 -14.42683 -14.21336 -13.83488 -13.67087 -13.25520 -13.07040 -12.64184 -12.28285 -12.15081 -12.09530 -11.41493 -11.13253 -11.02762 -10.91508 -10.79830 -10.68339 -10.57562 -10.14702 -9.98029 -9.91903 -9.62533 -9.13341 -8.95459 -8.73773 -8.60730 -8.29216 -5.93312 -3.97719 2.29909 2.86964 3.31604 3.34938 3.40452 3.42865 3.46355 3.90323 4.49075 4.50768 4.58461 4.74384 4.82017 4.86903 4.98203 5.15622 5.16360 5.36254 5.41423 5.46922 5.54798 5.68690 5.81934 5.86876 6.08449 6.24461 6.26345 6.30406 6.34722 6.39367 6.59117 6.70390 6.90304 6.93533 6.96879 7.77448 7.90350 7.92683 7.94863 8.10775 8.41913 8.85105 9.11276 9.65599 11.17630 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.002609 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.365635 B =10728.849411 C =10942.456495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.531 6.531 13 N -0.741 5.741 14 C 0.149 3.851 15 H 0.096 0.904 16 C -0.132 4.132 17 C -0.112 4.112 18 C 0.050 3.950 19 N -0.518 5.518 20 C 0.036 3.964 21 C 0.516 3.484 22 N -0.860 5.860 23 O -0.520 6.520 24 C 0.053 3.947 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.400 0.600 40 H 0.402 0.598 41 H 0.039 0.961 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 -27.050 1.985 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.405 6.405 13 N -0.395 5.395 14 C 0.044 3.956 15 H 0.114 0.886 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.077 4.077 19 N -0.243 5.243 20 C -0.096 4.096 21 C 0.300 3.700 22 N -0.425 5.425 23 O -0.394 6.394 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.228 0.772 40 H 0.233 0.767 41 H 0.057 0.943 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.071 -26.632 1.895 27.893 hybrid contribution 2.056 0.409 -0.159 2.103 sum 10.128 -26.223 1.736 28.164 Atomic orbital electron populations 1.70003 1.06040 1.26555 1.50207 1.25033 0.94829 0.99220 0.95367 0.86592 0.79750 0.83561 0.78034 1.20701 1.21235 1.19921 1.21225 0.92901 0.91052 1.51327 0.92644 1.18897 0.93190 0.89361 0.98637 1.21860 1.00696 0.92012 1.02381 1.21542 0.88694 0.85541 0.74274 1.90678 1.14430 1.87526 1.47912 1.46208 1.09792 1.05420 1.78066 1.20759 0.96135 0.82343 0.96403 0.88610 1.22026 1.00708 0.97532 0.96834 1.21515 0.99396 0.93716 1.00378 1.22327 0.98317 1.00441 0.86616 1.61464 1.44119 1.01390 1.17324 1.21936 0.94678 0.91438 1.01512 1.20569 0.88035 0.84254 0.77178 1.43874 1.18582 1.17401 1.62660 1.90754 1.18666 1.82173 1.47805 1.22309 0.94762 0.88999 1.01451 0.92960 0.95835 0.95804 0.90307 0.90346 0.77233 0.90779 0.92340 0.91277 0.90543 0.95394 0.88912 0.91801 0.87554 0.77201 0.76731 0.94306 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.90 7.80 -10.98 -0.09 9.82 16 12 O -0.53 -12.73 15.65 5.55 0.09 -12.64 16 13 N -0.74 -10.37 5.08 -53.72 -0.27 -10.65 16 14 C 0.15 1.97 2.61 -67.85 -0.18 1.79 16 15 H 0.10 1.58 7.58 -51.93 -0.39 1.19 16 16 C -0.13 -1.69 5.59 -26.56 -0.15 -1.84 16 17 C -0.11 -1.29 6.09 -26.61 -0.16 -1.45 16 18 C 0.05 0.52 5.11 -3.84 -0.02 0.50 16 19 N -0.52 -5.30 4.40 -236.11 -1.04 -6.34 16 20 C 0.04 0.25 5.45 -4.97 -0.03 0.22 16 21 C 0.52 4.32 7.77 -10.98 -0.09 4.23 16 22 N -0.86 -3.53 8.87 31.22 0.28 -3.26 16 23 O -0.52 -6.86 15.16 5.56 0.08 -6.78 16 24 C 0.05 0.52 4.93 -3.83 -0.02 0.50 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.39 4.20 8.60 -40.82 -0.35 3.85 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 1.07 5.78 -51.93 -0.30 0.77 16 37 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.11 0.54 7.99 -51.93 -0.41 0.13 16 39 H 0.40 0.36 8.83 -40.82 -0.36 0.00 16 40 H 0.40 1.45 8.93 -40.82 -0.36 1.08 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -37.63 344.36 -8.16 -45.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.79 Total: 0.81 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.94 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.30 Total: -47.23 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.17 Total: -19.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.63 -8.16 -45.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.779 kcal (2) G-P(sol) polarization free energy of solvation -37.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds