Wall clock time and date at job start Fri Apr 10 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99776 * 2 1 4 4 H 1.48502 * 109.47152 * 270.00183 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00306 * 3 2 1 7 7 C 1.37873 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00332 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99915 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.50433 * 324.99954 * 14 13 11 16 16 C 1.53123 * 109.50236 * 85.07876 * 14 13 11 17 17 C 1.53203 * 109.11533 * 177.59205 * 16 14 13 18 18 C 1.53030 * 109.30370 * 302.37368 * 17 16 14 19 19 N 1.46846 * 109.52435 * 59.17688 * 18 17 16 20 20 C 1.46902 * 111.00121 * 174.16395 * 19 18 17 21 21 C 1.50702 * 109.46821 * 294.21263 * 20 19 18 22 22 N 1.34777 * 119.99834 * 180.02562 * 21 20 19 23 23 O 1.21277 * 120.00047 * 359.97438 * 21 20 19 24 24 C 1.46856 * 111.19871 * 298.25760 * 19 18 17 25 25 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47283 * 60.00498 * 9 7 2 27 27 H 1.08998 * 109.46921 * 300.00071 * 9 7 2 28 28 H 1.08996 * 109.47379 * 60.00271 * 10 9 7 29 29 H 1.08998 * 109.47023 * 299.99633 * 10 9 7 30 30 H 0.96995 * 119.99935 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.52349 * 297.53842 * 16 14 13 32 32 H 1.08997 * 109.52263 * 57.72804 * 16 14 13 33 33 H 1.08997 * 109.49417 * 182.41991 * 17 16 14 34 34 H 1.09007 * 109.52297 * 62.34418 * 17 16 14 35 35 H 1.09004 * 109.46094 * 299.16423 * 18 17 16 36 36 H 1.08994 * 109.46717 * 179.19390 * 18 17 16 37 37 H 1.08998 * 109.46964 * 54.20591 * 20 19 18 38 38 H 1.08994 * 109.46972 * 174.21048 * 20 19 18 39 39 H 0.97002 * 119.99636 * 359.97438 * 22 21 20 40 40 H 0.96995 * 120.00251 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46462 * 301.73144 * 24 19 18 42 42 H 1.09002 * 109.45930 * 181.75412 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1344 -0.0018 14 6 1.4332 -7.4031 -0.0019 15 1 0.5226 -7.2976 0.5879 16 6 1.0697 -7.7835 -1.4399 17 6 0.3575 -9.1399 -1.4353 18 6 1.2664 -10.1863 -0.7866 19 7 1.5846 -9.7760 0.5870 20 6 2.3414 -10.8225 1.2871 21 6 1.4704 -12.0397 1.4632 22 7 1.9570 -13.1324 2.0842 23 8 0.3313 -12.0355 1.0471 24 6 2.3110 -8.4999 0.6053 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 3.1357 -6.1344 -0.0015 31 1 0.4094 -7.0256 -1.8613 32 1 1.9775 -7.8510 -2.0393 33 1 0.1341 -9.4369 -2.4599 34 1 -0.5704 -9.0622 -0.8685 35 1 2.1879 -10.2738 -1.3622 36 1 0.7565 -11.1494 -0.7690 37 1 3.2218 -11.0875 0.7016 38 1 2.6525 -10.4538 2.2644 39 1 2.8680 -13.1355 2.4174 40 1 1.3963 -13.9157 2.1979 41 1 3.2276 -8.5953 0.0231 42 1 2.5597 -8.2382 1.6338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324742254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:35 Heat of formation + Delta-G solvation = -117.237040 kcal Electronic energy + Delta-G solvation = -22140.639330 eV Core-core repulsion = 18732.462430 eV Total energy + Delta-G solvation = -3408.176900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23412 -40.52407 -39.07430 -35.84826 -35.48358 -34.62413 -33.79182 -32.94483 -30.69985 -28.56032 -27.59353 -24.65263 -24.18170 -23.09697 -21.45029 -21.30723 -20.70853 -18.80658 -18.35116 -17.78742 -17.38673 -17.18669 -16.46447 -16.44823 -16.42991 -16.13461 -15.47600 -15.06256 -14.86685 -14.85161 -14.53003 -14.13126 -14.12244 -13.86081 -13.48624 -13.21729 -12.82051 -12.79672 -12.46211 -12.37310 -11.96608 -11.88933 -11.81652 -11.63345 -11.60771 -11.28916 -10.89578 -10.64294 -10.56029 -10.52723 -10.02512 -9.27433 -8.16750 -6.31079 1.42744 1.45899 1.56780 1.71972 1.75739 2.06474 2.43502 2.61674 3.12214 3.16134 3.69553 3.84811 3.99408 4.05199 4.12064 4.24486 4.32562 4.37107 4.45997 4.52718 4.58037 4.58733 4.61341 4.68736 4.88120 4.97590 5.03337 5.12058 5.25623 5.33213 5.49112 5.55469 5.65117 5.87201 5.92707 6.02159 6.06457 6.18834 6.58170 6.67807 6.88079 7.38929 7.42197 7.45675 8.96053 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.002609 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.365635 B =10728.849411 C =10942.456495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.117 4.117 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.712 5.712 14 C 0.147 3.853 15 H 0.054 0.946 16 C -0.126 4.126 17 C -0.109 4.109 18 C 0.059 3.941 19 N -0.546 5.546 20 C 0.038 3.962 21 C 0.510 3.490 22 N -0.839 5.839 23 O -0.579 6.579 24 C 0.065 3.935 25 H 0.262 0.738 26 H -0.021 1.021 27 H -0.020 1.020 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.418 0.582 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.419 0.581 40 H 0.406 0.594 41 H 0.070 0.930 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.813 -28.051 2.323 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.365 5.365 14 C 0.041 3.959 15 H 0.072 0.928 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.068 4.068 19 N -0.272 5.272 20 C -0.093 4.093 21 C 0.295 3.705 22 N -0.404 5.404 23 O -0.458 6.458 24 C -0.063 4.063 25 H 0.071 0.929 26 H -0.002 1.002 27 H -0.001 1.001 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.255 0.745 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.250 0.750 40 H 0.237 0.763 41 H 0.088 0.912 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.707 -27.712 2.264 30.570 hybrid contribution 0.629 0.612 -0.237 0.909 sum 13.336 -27.100 2.027 30.272 Atomic orbital electron populations 1.70195 1.08401 1.27777 1.51586 1.26184 0.95733 1.04099 0.94708 0.85294 0.78680 0.77588 0.78503 1.19726 1.21312 1.17702 1.21729 0.94059 0.91536 1.50597 0.90382 1.18695 0.93776 0.92673 0.94533 1.21628 0.99208 0.89876 1.04984 1.21368 0.87811 0.86824 0.73962 1.90671 1.16958 1.88340 1.50965 1.45821 1.10843 1.04226 1.75617 1.20810 0.95609 0.82977 0.96473 0.92793 1.21944 1.00962 0.96986 0.96595 1.21479 0.98536 0.93808 1.00941 1.22175 0.98615 0.98856 0.87196 1.61320 1.45915 1.02512 1.17412 1.22052 0.94672 0.89816 1.02747 1.20964 0.87446 0.85417 0.76693 1.43709 1.19476 1.16344 1.60848 1.90742 1.21172 1.83320 1.50606 1.22175 0.94460 0.87321 1.02327 0.92915 1.00211 1.00130 0.87488 0.87631 0.74487 0.94523 0.89938 0.90063 0.93519 0.93087 0.90195 0.88565 0.85284 0.75001 0.76315 0.91167 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.63 13.29 21.45 0.28 -60.34 16 2 C -0.01 -0.59 5.46 84.65 0.46 -0.13 16 3 Si 0.98 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.12 -4.69 5.64 29.85 0.17 -4.52 16 11 C 0.51 20.08 7.80 87.66 0.68 20.77 16 12 O -0.59 -30.17 15.65 -3.04 -0.05 -30.21 16 13 N -0.71 -18.84 5.08 -442.27 -2.25 -21.08 16 14 C 0.15 3.80 2.61 45.05 0.12 3.92 16 15 H 0.05 1.89 7.58 -2.39 -0.02 1.87 16 16 C -0.13 -3.22 5.59 30.70 0.17 -3.05 16 17 C -0.11 -2.57 6.09 30.67 0.19 -2.38 16 18 C 0.06 1.14 5.11 86.32 0.44 1.58 16 19 N -0.55 -10.05 4.40 -900.92 -3.96 -14.01 16 20 C 0.04 0.39 5.45 85.56 0.47 0.86 16 21 C 0.51 7.64 7.77 87.66 0.68 8.32 16 22 N -0.84 -4.87 8.87 -173.53 -1.54 -6.41 16 23 O -0.58 -15.36 15.16 -3.02 -0.05 -15.40 16 24 C 0.07 1.07 4.93 86.32 0.43 1.49 16 25 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 26 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 27 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 28 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 30 H 0.42 7.32 8.60 -92.71 -0.80 6.52 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 1.81 5.78 -2.39 -0.01 1.80 16 37 H 0.10 0.43 8.12 -2.39 -0.02 0.41 16 38 H 0.13 0.76 7.99 -2.39 -0.02 0.74 16 39 H 0.42 -0.69 8.83 -92.71 -0.82 -1.50 16 40 H 0.41 2.21 8.93 -92.71 -0.83 1.38 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.35 8.02 -2.39 -0.02 1.33 16 Total: -1.00 -89.53 344.36 -2.77 -92.29 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -1.40 Total: 10.05 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.16 Total: -1.51 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -7.46 Total: -101.84 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.09 Total: -45.62 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -89.53 -2.77 -92.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.945 kcal (2) G-P(sol) polarization free energy of solvation -89.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds