Wall clock time and date at job start Fri Apr 10 2020 17:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99679 * 2 1 4 4 H 1.48499 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47289 * 299.99796 * 3 2 1 6 6 H 1.48498 * 109.47246 * 60.00176 * 3 2 1 7 7 C 1.38808 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99504 * 163.07111 * 7 2 1 9 9 N 1.36927 * 120.00282 * 343.06920 * 7 2 1 10 10 C 1.46930 * 120.63312 * 331.84879 * 9 7 2 11 11 C 1.53191 * 108.77927 * 233.58965 * 10 9 7 12 12 C 1.53036 * 109.31038 * 305.36440 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38746 * 12 11 10 14 14 C 1.34780 * 120.00049 * 154.97580 * 13 12 11 15 15 O 1.21585 * 119.99903 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99722 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99669 * 180.27001 * 16 14 13 18 18 C 1.50700 * 109.47060 * 179.72006 * 17 16 14 19 19 C 1.31001 * 119.99460 * 124.99839 * 18 17 16 20 20 C 1.50700 * 119.99460 * 180.02562 * 19 18 17 21 21 O 1.42911 * 109.46890 * 135.00330 * 20 19 18 22 22 C 1.53042 * 109.53047 * 61.37009 * 12 11 10 23 23 C 1.46927 * 120.63272 * 151.82992 * 9 7 2 24 24 H 0.96998 * 120.00308 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58418 * 113.79929 * 10 9 7 26 26 H 1.09005 * 109.69921 * 353.44363 * 10 9 7 27 27 H 1.08996 * 109.49938 * 185.41298 * 11 10 9 28 28 H 1.08996 * 109.52338 * 65.32962 * 11 10 9 29 29 H 1.09005 * 109.46134 * 301.35556 * 12 11 10 30 30 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 31 31 H 0.96998 * 120.00176 * 359.97438 * 16 14 13 32 32 H 1.08997 * 109.47173 * 299.72701 * 17 16 14 33 33 H 1.09001 * 109.46711 * 59.71950 * 17 16 14 34 34 H 1.07999 * 120.00162 * 305.00786 * 18 17 16 35 35 H 1.07994 * 120.00718 * 0.02562 * 19 18 17 36 36 H 1.08997 * 109.47233 * 255.00302 * 20 19 18 37 37 H 1.08998 * 109.47804 * 15.00823 * 20 19 18 38 38 H 0.96696 * 113.99693 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.49605 * 58.57990 * 22 12 11 40 40 H 1.08997 * 109.49712 * 178.67549 * 22 12 11 41 41 H 1.09007 * 109.58715 * 246.19986 * 23 9 7 42 42 H 1.08995 * 109.58688 * 6.48326 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3701 -2.3624 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4975 -3.3208 2.4118 12 6 0.8121 -4.7020 1.8327 13 7 1.0397 -5.6496 2.9265 14 6 0.8359 -6.9673 2.7300 15 8 0.4627 -7.3695 1.6450 16 7 1.0448 -7.8390 3.7365 17 6 0.8290 -9.2719 3.5212 18 6 1.1367 -10.0227 4.7911 19 6 0.2371 -10.8167 5.3169 20 6 0.5446 -11.5670 6.5871 21 8 -0.5681 -11.4702 7.4787 22 6 2.0677 -4.6177 0.9616 23 6 1.8139 -3.6527 -0.2008 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6769 -2.6411 0.7346 26 1 0.0968 -1.3359 1.6677 27 1 -0.3830 -3.3863 3.0509 28 1 1.3470 -2.9699 2.9977 29 1 -0.0280 -5.0418 1.2269 30 1 1.3372 -5.3286 3.7922 31 1 1.3422 -7.5180 4.6022 32 1 -0.2097 -9.4446 3.2395 33 1 1.4846 -9.6223 2.7240 34 1 2.0988 -9.9061 5.2677 35 1 -0.7249 -10.9335 4.8401 36 1 0.7330 -12.6148 6.3536 37 1 1.4271 -11.1356 7.0594 38 1 -0.4401 -11.9316 8.3188 39 1 2.9025 -4.2542 1.5609 40 1 2.3047 -5.6062 0.5684 41 1 1.0403 -4.0599 -0.8518 42 1 2.7333 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330059756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:46 Heat of formation + Delta-G solvation = -45.205535 kcal Electronic energy + Delta-G solvation = -21869.204668 eV Core-core repulsion = 18464.151289 eV Total energy + Delta-G solvation = -3405.053380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92913 -37.83453 -37.41777 -35.76290 -34.29944 -33.30473 -31.95285 -30.10035 -29.41402 -27.91133 -25.03432 -23.86769 -22.22744 -21.85386 -20.73152 -20.12124 -19.36534 -18.18820 -17.61672 -16.85180 -16.29783 -15.62420 -15.39135 -14.96717 -14.83383 -14.32571 -14.07339 -13.75813 -13.53904 -13.43192 -12.94171 -12.93912 -12.64688 -12.33588 -12.27315 -11.45312 -11.41216 -11.09621 -10.83498 -10.81370 -10.71309 -10.44575 -10.23331 -10.07250 -9.99643 -9.74543 -9.64181 -9.49566 -9.10121 -8.56015 -8.40777 -6.65602 -5.77346 -3.19379 1.51722 2.97291 3.38116 3.41325 3.46030 3.48359 3.82020 4.43027 4.51211 4.51344 4.58062 4.86031 4.92218 5.11891 5.36063 5.37205 5.44223 5.53864 5.56820 5.65925 5.94518 6.12565 6.13191 6.19275 6.33342 6.40437 6.46967 6.54273 6.62000 6.65767 6.84412 6.95017 7.03104 7.11739 7.15851 7.35419 7.65191 7.81794 8.19038 8.47001 8.79605 9.23132 9.86480 10.43843 11.31618 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.002533 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.419953 B =11052.645532 C =11269.161638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.750 5.750 17 C 0.170 3.830 18 C -0.161 4.161 19 C -0.137 4.137 20 C 0.104 3.896 21 O -0.570 6.570 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.253 0.747 25 H 0.021 0.979 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.391 0.609 31 H 0.395 0.605 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.382 0.618 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -20.250 14.822 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.401 3.599 15 O -0.469 6.469 16 N -0.407 5.407 17 C 0.046 3.954 18 C -0.179 4.179 19 C -0.157 4.157 20 C 0.026 3.974 21 O -0.376 6.376 22 C -0.179 4.179 23 C 0.020 3.980 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.224 0.776 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.123 -20.110 13.258 24.180 hybrid contribution 1.002 0.727 1.331 1.817 sum 3.125 -19.383 14.588 24.460 Atomic orbital electron populations 1.70037 1.05239 1.25385 1.54129 1.25062 0.95304 0.98431 1.01006 0.86226 0.79349 0.83976 0.77247 1.20285 1.21752 1.21595 1.19231 0.92589 0.84742 1.41400 0.91620 1.44105 1.35822 1.01695 1.49975 1.20741 0.88924 0.97866 0.87691 1.22539 1.00480 0.94768 1.00811 1.20912 0.98338 0.87497 0.86787 1.45542 1.72688 1.04889 1.16104 1.16014 0.78565 0.81308 0.83990 1.90921 1.53533 1.78046 1.24417 1.45084 1.74945 1.06371 1.14252 1.20080 1.01749 0.78775 0.94836 1.22883 0.99658 0.97566 0.97824 1.22715 0.99781 0.97540 0.95619 1.21153 0.88531 0.98789 0.88892 1.86529 1.41496 1.78520 1.31043 1.22389 0.97259 0.99470 0.98830 1.20881 0.97877 0.86506 0.92702 0.93669 0.96074 0.89049 0.92772 0.92252 0.90079 0.77629 0.77189 0.91191 0.90743 0.86543 0.86200 0.92479 0.92929 0.77122 0.92485 0.92718 0.96151 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.89 9.58 -15.07 -0.14 -7.03 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -15.03 2.99 -172.32 -0.52 -15.54 16 10 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 13 N -0.74 -10.80 5.08 -58.63 -0.30 -11.10 16 14 C 0.70 10.88 8.53 -86.91 -0.74 10.14 16 15 O -0.59 -11.76 16.01 5.29 0.08 -11.67 16 16 N -0.75 -8.33 5.55 -66.41 -0.37 -8.70 16 17 C 0.17 1.70 6.11 -5.19 -0.03 1.67 16 18 C -0.16 -1.16 9.23 -36.03 -0.33 -1.50 16 19 C -0.14 -1.02 9.50 -36.03 -0.34 -1.36 16 20 C 0.10 0.60 7.46 36.01 0.27 0.87 16 21 O -0.57 -4.03 13.64 -35.23 -0.48 -4.51 16 22 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 23 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 30 H 0.39 4.54 8.62 -40.82 -0.35 4.19 16 31 H 0.39 3.27 8.48 -40.82 -0.35 2.92 16 32 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.66 7.90 -52.49 -0.41 0.25 16 35 H 0.12 0.97 7.84 -52.49 -0.41 0.56 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.05 0.24 7.86 -51.93 -0.41 -0.17 16 38 H 0.38 0.84 9.12 45.56 0.42 1.26 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -34.32 346.65 -8.65 -42.97 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.97 Total: 5.06 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.91 Total: 7.29 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.56 Total: -61.00 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.40 Total: -16.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.32 -8.65 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330059756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.232 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds