Wall clock time and date at job start Fri Apr 10 2020 17:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99679 * 2 1 4 4 H 1.48499 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47289 * 299.99796 * 3 2 1 6 6 H 1.48498 * 109.47246 * 60.00176 * 3 2 1 7 7 C 1.38808 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99504 * 163.07111 * 7 2 1 9 9 N 1.36927 * 120.00282 * 343.06920 * 7 2 1 10 10 C 1.46930 * 120.63312 * 331.84879 * 9 7 2 11 11 C 1.53191 * 108.77927 * 233.58965 * 10 9 7 12 12 C 1.53036 * 109.31038 * 305.36440 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38746 * 12 11 10 14 14 C 1.34780 * 120.00049 * 154.97580 * 13 12 11 15 15 O 1.21585 * 119.99903 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99722 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99669 * 180.27001 * 16 14 13 18 18 C 1.50700 * 109.47060 * 179.72006 * 17 16 14 19 19 C 1.31001 * 119.99460 * 124.99839 * 18 17 16 20 20 C 1.50700 * 119.99460 * 180.02562 * 19 18 17 21 21 O 1.42911 * 109.46890 * 135.00330 * 20 19 18 22 22 C 1.53042 * 109.53047 * 61.37009 * 12 11 10 23 23 C 1.46927 * 120.63272 * 151.82992 * 9 7 2 24 24 H 0.96998 * 120.00308 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58418 * 113.79929 * 10 9 7 26 26 H 1.09005 * 109.69921 * 353.44363 * 10 9 7 27 27 H 1.08996 * 109.49938 * 185.41298 * 11 10 9 28 28 H 1.08996 * 109.52338 * 65.32962 * 11 10 9 29 29 H 1.09005 * 109.46134 * 301.35556 * 12 11 10 30 30 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 31 31 H 0.96998 * 120.00176 * 359.97438 * 16 14 13 32 32 H 1.08997 * 109.47173 * 299.72701 * 17 16 14 33 33 H 1.09001 * 109.46711 * 59.71950 * 17 16 14 34 34 H 1.07999 * 120.00162 * 305.00786 * 18 17 16 35 35 H 1.07994 * 120.00718 * 0.02562 * 19 18 17 36 36 H 1.08997 * 109.47233 * 255.00302 * 20 19 18 37 37 H 1.08998 * 109.47804 * 15.00823 * 20 19 18 38 38 H 0.96696 * 113.99693 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.49605 * 58.57990 * 22 12 11 40 40 H 1.08997 * 109.49712 * 178.67549 * 22 12 11 41 41 H 1.09007 * 109.58715 * 246.19986 * 23 9 7 42 42 H 1.08995 * 109.58688 * 6.48326 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3701 -2.3624 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4975 -3.3208 2.4118 12 6 0.8121 -4.7020 1.8327 13 7 1.0397 -5.6496 2.9265 14 6 0.8359 -6.9673 2.7300 15 8 0.4627 -7.3695 1.6450 16 7 1.0448 -7.8390 3.7365 17 6 0.8290 -9.2719 3.5212 18 6 1.1367 -10.0227 4.7911 19 6 0.2371 -10.8167 5.3169 20 6 0.5446 -11.5670 6.5871 21 8 -0.5681 -11.4702 7.4787 22 6 2.0677 -4.6177 0.9616 23 6 1.8139 -3.6527 -0.2008 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6769 -2.6411 0.7346 26 1 0.0968 -1.3359 1.6677 27 1 -0.3830 -3.3863 3.0509 28 1 1.3470 -2.9699 2.9977 29 1 -0.0280 -5.0418 1.2269 30 1 1.3372 -5.3286 3.7922 31 1 1.3422 -7.5180 4.6022 32 1 -0.2097 -9.4446 3.2395 33 1 1.4846 -9.6223 2.7240 34 1 2.0988 -9.9061 5.2677 35 1 -0.7249 -10.9335 4.8401 36 1 0.7330 -12.6148 6.3536 37 1 1.4271 -11.1356 7.0594 38 1 -0.4401 -11.9316 8.3188 39 1 2.9025 -4.2542 1.5609 40 1 2.3047 -5.6062 0.5684 41 1 1.0403 -4.0599 -0.8518 42 1 2.7333 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330059756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:46 Heat of formation + Delta-G solvation = -72.495542 kcal Electronic energy + Delta-G solvation = -21870.388052 eV Core-core repulsion = 18464.151289 eV Total energy + Delta-G solvation = -3406.236763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19164 -39.17426 -38.19004 -36.68123 -35.89329 -34.32480 -33.61037 -31.77215 -31.12794 -28.75507 -26.81484 -24.75882 -23.91383 -23.46570 -21.88937 -21.08223 -20.78118 -19.36803 -18.64944 -18.11363 -17.56687 -16.84446 -16.56415 -16.17535 -15.85063 -15.67612 -15.36479 -15.24397 -15.03945 -14.76377 -14.51278 -14.08026 -14.02595 -13.53625 -13.19846 -13.06056 -13.01059 -12.62084 -12.50736 -12.21608 -12.00564 -11.98256 -11.86126 -11.56496 -11.44070 -11.29515 -11.18448 -10.56399 -10.42006 -10.11690 -9.70327 -8.70552 -7.87237 -5.33105 0.90619 1.48267 1.49966 1.60969 1.88968 2.17525 2.52524 3.26882 3.34702 3.43814 3.67521 3.91286 4.01905 4.06148 4.08277 4.35646 4.38394 4.47262 4.50129 4.58440 4.65729 4.66321 4.77229 4.82790 4.87468 5.03702 5.07976 5.17060 5.30555 5.41600 5.47890 5.56962 5.61223 5.65490 5.70750 5.71607 6.05926 6.39681 6.91344 7.14530 7.14891 7.61560 7.84259 8.37655 9.20153 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.002533 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.419953 B =11052.645532 C =11269.161638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.180 3.820 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.730 5.730 17 C 0.168 3.832 18 C -0.153 4.153 19 C -0.143 4.143 20 C 0.103 3.897 21 O -0.596 6.596 22 C -0.123 4.123 23 C 0.144 3.856 24 H 0.251 0.749 25 H -0.006 1.006 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.410 0.590 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.006 0.994 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -21.129 17.124 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.380 5.380 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.387 5.387 17 C 0.044 3.956 18 C -0.172 4.172 19 C -0.162 4.162 20 C 0.026 3.974 21 O -0.406 6.406 22 C -0.163 4.163 23 C 0.018 3.982 24 H 0.060 0.940 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.249 0.751 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.865 -21.032 15.648 26.498 hybrid contribution 0.423 0.906 0.586 1.159 sum 4.288 -20.126 16.234 26.211 Atomic orbital electron populations 1.70195 1.06722 1.25892 1.55448 1.25847 0.96077 1.01613 1.01180 0.85168 0.78607 0.79645 0.76763 1.19020 1.22196 1.21379 1.19556 0.92881 0.85772 1.40936 0.91418 1.44365 1.35943 1.02229 1.50737 1.20569 0.87712 0.97756 0.88774 1.22251 1.01973 0.93556 0.98898 1.20494 0.96950 0.87719 0.87340 1.45119 1.72600 1.04251 1.16066 1.16173 0.78265 0.81669 0.84087 1.90899 1.55591 1.78822 1.26668 1.44912 1.73479 1.06296 1.13978 1.20129 1.00779 0.78262 0.96446 1.22746 1.00684 0.97227 0.96525 1.22865 0.99219 0.97654 0.96439 1.21226 0.88682 0.99530 0.87999 1.86468 1.42426 1.79222 1.32449 1.22178 0.97897 0.98489 0.97748 1.20972 0.97350 0.85965 0.93911 0.94019 0.98836 0.91763 0.90596 0.90957 0.92805 0.75349 0.75090 0.92743 0.91393 0.84137 0.87639 0.90980 0.91093 0.74887 0.91426 0.92401 0.97613 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.68 11.19 21.65 0.24 -55.44 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 3 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -31.19 2.99 -699.09 -2.09 -33.29 16 10 C 0.18 8.64 5.30 86.36 0.46 9.09 16 11 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 12 C 0.18 6.33 2.42 45.02 0.11 6.44 16 13 N -0.73 -19.66 5.08 -457.68 -2.33 -21.99 16 14 C 0.70 20.67 8.53 179.05 1.53 22.20 16 15 O -0.64 -25.32 16.01 -3.98 -0.06 -25.38 16 16 N -0.73 -14.69 5.55 -482.28 -2.68 -17.36 16 17 C 0.17 3.15 6.11 85.63 0.52 3.67 16 18 C -0.15 -1.86 9.23 25.65 0.24 -1.62 16 19 C -0.14 -1.86 9.50 25.65 0.24 -1.62 16 20 C 0.10 0.92 7.46 71.24 0.53 1.46 16 21 O -0.60 -7.26 13.64 -148.98 -2.03 -9.29 16 22 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 23 C 0.14 6.39 6.52 86.36 0.56 6.96 16 24 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.05 2.23 7.58 -2.38 -0.02 2.21 16 30 H 0.41 8.12 8.62 -92.71 -0.80 7.33 16 31 H 0.41 5.48 8.48 -92.71 -0.79 4.69 16 32 H 0.05 1.20 7.79 -2.39 -0.02 1.18 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.07 7.90 -2.91 -0.02 1.05 16 35 H 0.11 1.65 7.84 -2.91 -0.02 1.63 16 36 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.07 0.39 7.86 -2.39 -0.02 0.37 16 38 H 0.40 0.94 9.12 -74.06 -0.68 0.26 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 42 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -75.38 346.65 -2.39 -77.76 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -1.22 Total: 16.55 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 5.76 Total: 21.68 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -6.85 Total: -128.08 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.10 Total: -34.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.38 -2.39 -77.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330059756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.269 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds