Wall clock time and date at job start Fri Apr 10 2020 17:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47326 * 269.99858 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99932 * 3 2 1 6 6 H 1.48499 * 109.47474 * 149.99739 * 3 2 1 7 7 C 1.37882 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99976 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47198 * 300.00571 * 9 7 2 11 11 O 1.42908 * 109.46959 * 60.00051 * 9 7 2 12 12 C 1.52995 * 109.47245 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47238 * 180.02562 * 12 9 7 14 14 C 1.48535 * 110.99705 * 287.39611 * 13 12 9 15 15 C 1.55194 * 103.23331 * 200.25656 * 14 13 12 16 16 C 1.54597 * 102.80318 * 37.43502 * 15 14 13 17 17 H 1.09004 * 110.30454 * 219.05035 * 16 15 14 18 18 N 1.46497 * 110.31009 * 96.98249 * 16 15 14 19 19 C 1.34777 * 120.00142 * 87.78913 * 18 16 15 20 20 O 1.21585 * 120.00067 * 359.97438 * 19 18 16 21 21 N 1.34773 * 119.99676 * 180.02562 * 19 18 16 22 22 C 1.46504 * 119.99686 * 179.97438 * 21 19 18 23 23 C 1.53000 * 117.49545 * 136.37993 * 22 21 19 24 24 C 1.52997 * 60.00347 * 107.48990 * 23 22 21 25 25 C 1.47895 * 110.99961 * 169.99838 * 13 12 9 26 26 H 0.96997 * 120.00161 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99628 * 59.99889 * 11 9 7 28 28 H 1.08998 * 109.47236 * 60.00209 * 12 9 7 29 29 H 1.09004 * 109.46884 * 299.99863 * 12 9 7 30 30 H 1.09004 * 110.66313 * 318.71196 * 14 13 12 31 31 H 1.08993 * 110.66785 * 81.67490 * 14 13 12 32 32 H 1.08999 * 110.76094 * 279.12410 * 15 14 13 33 33 H 1.09000 * 110.79512 * 155.76293 * 15 14 13 34 34 H 0.97002 * 119.99668 * 267.78879 * 18 16 15 35 35 H 0.97002 * 120.00134 * 359.97438 * 21 19 18 36 36 H 1.08990 * 115.56282 * 350.69216 * 22 21 19 37 37 H 1.09002 * 117.49696 * 214.98203 * 23 22 21 38 38 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 39 39 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 40 40 H 1.08997 * 117.50044 * 107.48590 * 24 23 22 41 41 H 1.08995 * 109.91940 * 26.48961 * 25 13 12 42 42 H 1.08999 * 110.08276 * 265.28792 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 -0.8905 11 8 3.9883 -0.5196 1.1662 12 6 4.0215 -2.6365 0.0001 13 7 5.4906 -2.6365 0.0001 14 6 6.0228 -2.2220 -1.3232 15 6 7.4733 -2.7738 -1.3114 16 6 7.3198 -4.1253 -0.5765 17 1 8.1683 -4.2938 0.0867 18 7 7.2061 -5.2199 -1.5436 19 6 8.3166 -5.8213 -2.0143 20 8 9.4128 -5.4551 -1.6367 21 7 8.2119 -6.8279 -2.9043 22 6 9.4190 -7.4813 -3.4165 23 6 9.4094 -9.0083 -3.5115 24 6 9.3278 -8.1621 -4.7836 25 6 6.0206 -3.9963 0.2400 26 1 -0.4850 0.8400 0.0004 27 1 3.7032 -0.9227 1.9977 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8904 30 1 5.4452 -2.6748 -2.1291 31 1 6.0228 -1.1360 -1.4148 32 1 8.1357 -2.1074 -0.7589 33 1 7.8376 -2.9264 -2.3273 34 1 6.3315 -5.5117 -1.8450 35 1 7.3373 -7.1198 -3.2058 36 1 10.3612 -6.9991 -3.1562 37 1 10.3454 -9.5307 -3.3137 38 1 8.5049 -9.5268 -3.1935 39 1 8.3698 -8.1239 -5.3020 40 1 10.2101 -8.1278 -5.4227 41 1 5.2974 -4.7408 -0.0928 42 1 6.2332 -4.1334 1.3003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351303150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:10 Heat of formation + Delta-G solvation = -38.407967 kcal Electronic energy + Delta-G solvation = -22333.363585 eV Core-core repulsion = 18928.604970 eV Total energy + Delta-G solvation = -3404.758615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44612 -38.83462 -37.39268 -35.98433 -34.14064 -32.92838 -32.23061 -30.68041 -28.71317 -27.60506 -24.54015 -22.89419 -22.78777 -21.63362 -21.13425 -20.64770 -19.89930 -18.72786 -17.34896 -16.97524 -16.08563 -15.56549 -15.16640 -14.88946 -14.76413 -14.67977 -14.42607 -14.14666 -13.59644 -13.29401 -13.06152 -12.82708 -12.31103 -12.13762 -12.06039 -11.94840 -11.57195 -11.46001 -11.21732 -11.04219 -10.90179 -10.88765 -10.68979 -10.35496 -10.34744 -9.89150 -9.33302 -9.03699 -8.89487 -8.62361 -8.25864 -7.94900 -6.13930 -4.25446 2.37358 2.89859 3.39706 3.49614 3.59307 3.77917 3.88739 4.37876 4.40354 4.54482 4.55842 4.59948 4.61070 4.83449 5.12669 5.21414 5.22003 5.36765 5.39173 5.49712 5.51290 5.65746 5.71511 5.82873 5.87145 5.92972 6.02719 6.10536 6.20876 6.21569 6.30539 6.43995 6.56345 6.69822 7.12367 7.31080 7.42970 7.66130 7.76853 8.28238 8.39446 8.82280 9.12288 9.51416 10.96645 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.002972 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.222108 B = 9417.639534 C = 9648.064815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.214 1.214 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.204 3.796 10 H 0.051 0.949 11 O -0.570 6.570 12 C 0.032 3.968 13 N -0.504 5.504 14 C 0.036 3.964 15 C -0.130 4.130 16 C 0.152 3.848 17 H 0.098 0.902 18 N -0.737 5.737 19 C 0.709 3.291 20 O -0.588 6.588 21 N -0.721 5.721 22 C 0.102 3.898 23 C -0.197 4.197 24 C -0.192 4.192 25 C 0.030 3.970 26 H 0.265 0.735 27 H 0.354 0.646 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.395 0.605 35 H 0.397 0.603 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.046 0.954 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.411 -15.665 -6.637 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.136 1.136 7 C -0.605 4.605 8 H 0.088 0.912 9 C 0.146 3.854 10 H 0.069 0.931 11 O -0.375 6.375 12 C -0.096 4.096 13 N -0.228 5.228 14 C -0.092 4.092 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.116 0.884 18 N -0.392 5.392 19 C 0.409 3.591 20 O -0.466 6.466 21 N -0.374 5.374 22 C -0.005 4.005 23 C -0.236 4.236 24 C -0.231 4.231 25 C -0.099 4.099 26 H 0.074 0.926 27 H 0.200 0.800 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.231 0.769 36 H 0.157 0.843 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.700 -14.447 -6.275 23.694 hybrid contribution -1.454 -0.570 -0.787 1.749 sum 16.246 -15.017 -7.062 23.223 Atomic orbital electron populations 1.69955 1.06814 1.27501 1.48858 1.24988 0.94610 1.00047 0.92455 0.87026 0.83230 0.81670 0.78353 1.21526 1.22282 1.13639 1.21516 0.89944 0.94747 1.54245 0.91187 1.19645 0.92910 0.86784 0.86052 0.93127 1.86670 1.77906 1.56857 1.16032 1.23036 0.84808 1.01437 1.00326 1.64882 1.09750 1.19783 1.28411 1.23303 0.93846 1.01641 0.90419 1.22955 0.97293 0.95984 1.00724 1.21726 0.98994 0.85250 0.89331 0.88441 1.45391 1.07432 1.38227 1.48110 1.15863 0.84816 0.79283 0.79169 1.90921 1.25575 1.67307 1.62776 1.44500 1.08659 1.37266 1.46956 1.21408 0.90022 0.91497 0.97525 1.23459 1.03924 0.94476 1.01738 1.23407 1.03916 1.04404 0.91367 1.23160 0.94273 0.91869 1.00604 0.92584 0.80039 0.94791 0.91232 0.94159 0.89711 0.89868 0.91068 0.77119 0.76917 0.84346 0.87991 0.88574 0.88515 0.87846 0.93587 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.87 21.82 26.99 -169.99 -4.59 17.23 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.21 -5.28 5.30 56.52 0.30 -4.98 16 7 C -0.57 -15.47 9.34 -34.44 -0.32 -15.79 16 8 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 9 C 0.20 4.67 2.35 -27.88 -0.07 4.61 16 10 H 0.05 1.21 6.79 -51.93 -0.35 0.86 16 11 O -0.57 -12.97 10.01 -35.23 -0.35 -13.32 16 12 C 0.03 0.60 4.31 -3.82 -0.02 0.58 16 13 N -0.50 -8.16 5.11 -230.29 -1.18 -9.34 16 14 C 0.04 0.54 5.92 -1.76 -0.01 0.53 16 15 C -0.13 -1.70 6.80 -24.73 -0.17 -1.87 16 16 C 0.15 1.87 3.31 -66.58 -0.22 1.65 16 17 H 0.10 1.29 7.60 -51.93 -0.39 0.90 16 18 N -0.74 -7.78 5.08 -57.35 -0.29 -8.07 16 19 C 0.71 8.51 8.56 -86.92 -0.74 7.76 16 20 O -0.59 -9.39 15.58 5.29 0.08 -9.31 16 21 N -0.72 -6.29 5.57 -58.67 -0.33 -6.61 16 22 C 0.10 0.84 6.43 -67.93 -0.44 0.40 16 23 C -0.20 -1.21 10.46 -26.73 -0.28 -1.49 16 24 C -0.19 -1.13 10.46 -26.73 -0.28 -1.41 16 25 C 0.03 0.39 6.44 -2.76 -0.02 0.37 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.35 7.22 9.04 45.56 0.41 7.63 16 28 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 29 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 30 H 0.04 0.59 7.81 -51.93 -0.41 0.19 16 31 H 0.08 1.39 7.80 -51.93 -0.40 0.98 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 34 H 0.39 3.34 8.32 -40.82 -0.34 3.00 16 35 H 0.40 2.44 8.84 -40.82 -0.36 2.08 16 36 H 0.14 1.35 7.40 -51.93 -0.38 0.96 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.55 7.25 -51.93 -0.38 0.18 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -33.41 341.61 -9.43 -42.85 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.04 Total: 10.16 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.66 Total: -2.38 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.02 Total: -50.38 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.27 Total: -22.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.59 Total: 17.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.41 -9.43 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351303150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.437 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds