Wall clock time and date at job start Fri Apr 10 2020 17:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47326 * 269.99858 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99932 * 3 2 1 6 6 H 1.48499 * 109.47474 * 149.99739 * 3 2 1 7 7 C 1.37882 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99976 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47198 * 300.00571 * 9 7 2 11 11 O 1.42908 * 109.46959 * 60.00051 * 9 7 2 12 12 C 1.52995 * 109.47245 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47238 * 180.02562 * 12 9 7 14 14 C 1.48535 * 110.99705 * 287.39611 * 13 12 9 15 15 C 1.55194 * 103.23331 * 200.25656 * 14 13 12 16 16 C 1.54597 * 102.80318 * 37.43502 * 15 14 13 17 17 H 1.09004 * 110.30454 * 219.05035 * 16 15 14 18 18 N 1.46497 * 110.31009 * 96.98249 * 16 15 14 19 19 C 1.34777 * 120.00142 * 87.78913 * 18 16 15 20 20 O 1.21585 * 120.00067 * 359.97438 * 19 18 16 21 21 N 1.34773 * 119.99676 * 180.02562 * 19 18 16 22 22 C 1.46504 * 119.99686 * 179.97438 * 21 19 18 23 23 C 1.53000 * 117.49545 * 136.37993 * 22 21 19 24 24 C 1.52997 * 60.00347 * 107.48990 * 23 22 21 25 25 C 1.47895 * 110.99961 * 169.99838 * 13 12 9 26 26 H 0.96997 * 120.00161 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99628 * 59.99889 * 11 9 7 28 28 H 1.08998 * 109.47236 * 60.00209 * 12 9 7 29 29 H 1.09004 * 109.46884 * 299.99863 * 12 9 7 30 30 H 1.09004 * 110.66313 * 318.71196 * 14 13 12 31 31 H 1.08993 * 110.66785 * 81.67490 * 14 13 12 32 32 H 1.08999 * 110.76094 * 279.12410 * 15 14 13 33 33 H 1.09000 * 110.79512 * 155.76293 * 15 14 13 34 34 H 0.97002 * 119.99668 * 267.78879 * 18 16 15 35 35 H 0.97002 * 120.00134 * 359.97438 * 21 19 18 36 36 H 1.08990 * 115.56282 * 350.69216 * 22 21 19 37 37 H 1.09002 * 117.49696 * 214.98203 * 23 22 21 38 38 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 39 39 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 40 40 H 1.08997 * 117.50044 * 107.48590 * 24 23 22 41 41 H 1.08995 * 109.91940 * 26.48961 * 25 13 12 42 42 H 1.08999 * 110.08276 * 265.28792 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 -0.8905 11 8 3.9883 -0.5196 1.1662 12 6 4.0215 -2.6365 0.0001 13 7 5.4906 -2.6365 0.0001 14 6 6.0228 -2.2220 -1.3232 15 6 7.4733 -2.7738 -1.3114 16 6 7.3198 -4.1253 -0.5765 17 1 8.1683 -4.2938 0.0867 18 7 7.2061 -5.2199 -1.5436 19 6 8.3166 -5.8213 -2.0143 20 8 9.4128 -5.4551 -1.6367 21 7 8.2119 -6.8279 -2.9043 22 6 9.4190 -7.4813 -3.4165 23 6 9.4094 -9.0083 -3.5115 24 6 9.3278 -8.1621 -4.7836 25 6 6.0206 -3.9963 0.2400 26 1 -0.4850 0.8400 0.0004 27 1 3.7032 -0.9227 1.9977 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8904 30 1 5.4452 -2.6748 -2.1291 31 1 6.0228 -1.1360 -1.4148 32 1 8.1357 -2.1074 -0.7589 33 1 7.8376 -2.9264 -2.3273 34 1 6.3315 -5.5117 -1.8450 35 1 7.3373 -7.1198 -3.2058 36 1 10.3612 -6.9991 -3.1562 37 1 10.3454 -9.5307 -3.3137 38 1 8.5049 -9.5268 -3.1935 39 1 8.3698 -8.1239 -5.3020 40 1 10.2101 -8.1278 -5.4227 41 1 5.2974 -4.7408 -0.0928 42 1 6.2332 -4.1334 1.3003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351303150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:10 Heat of formation + Delta-G solvation = -66.430461 kcal Electronic energy + Delta-G solvation = -22334.578731 eV Core-core repulsion = 18928.604970 eV Total energy + Delta-G solvation = -3405.973762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38155 -39.94278 -38.21464 -37.57630 -35.26576 -34.38912 -33.78835 -31.92050 -30.08975 -29.05337 -26.22061 -23.69575 -23.24849 -23.04805 -22.01307 -21.84011 -21.21863 -19.59423 -19.33691 -17.85096 -17.07327 -16.90431 -16.54057 -16.26537 -16.08241 -15.94335 -15.55853 -15.37084 -14.86467 -14.64387 -14.61591 -13.88405 -13.65969 -13.43504 -13.22347 -12.94315 -12.86165 -12.55582 -12.47472 -12.35576 -12.26516 -12.21799 -11.96765 -11.65593 -11.46125 -11.35033 -11.03905 -10.79421 -10.27239 -10.08697 -9.59837 -9.26619 -8.34749 -6.48693 1.40105 1.46489 1.57385 1.77575 2.02458 2.45235 2.99420 3.03142 3.04760 3.27060 3.53337 3.73685 3.83281 4.05729 4.07827 4.09458 4.16589 4.30358 4.33804 4.43556 4.52234 4.67144 4.77893 4.78415 4.86356 4.96662 5.01033 5.02082 5.05331 5.11406 5.22448 5.43271 5.46721 5.52132 5.55607 5.92847 6.02103 6.10167 6.11807 6.64169 7.01271 7.25238 7.41351 7.52577 8.79253 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.002972 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.222108 B = 9417.639534 C = 9648.064815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.039 0.961 9 C 0.210 3.790 10 H 0.044 0.956 11 O -0.574 6.574 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.036 3.964 15 C -0.121 4.121 16 C 0.161 3.839 17 H 0.090 0.910 18 N -0.727 5.727 19 C 0.705 3.295 20 O -0.632 6.632 21 N -0.707 5.707 22 C 0.072 3.928 23 C -0.186 4.186 24 C -0.175 4.175 25 C 0.035 3.965 26 H 0.266 0.734 27 H 0.365 0.635 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.407 0.593 35 H 0.411 0.589 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -16.718 -7.213 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.127 1.127 7 C -0.602 4.602 8 H 0.057 0.943 9 C 0.151 3.849 10 H 0.062 0.938 11 O -0.380 6.380 12 C -0.082 4.082 13 N -0.239 5.239 14 C -0.092 4.092 15 C -0.160 4.160 16 C 0.055 3.945 17 H 0.108 0.892 18 N -0.382 5.382 19 C 0.405 3.595 20 O -0.513 6.513 21 N -0.361 5.361 22 C -0.035 4.035 23 C -0.225 4.225 24 C -0.214 4.214 25 C -0.093 4.093 26 H 0.075 0.925 27 H 0.213 0.787 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.248 0.752 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.920 -15.549 -6.874 25.436 hybrid contribution -1.834 -0.343 -0.621 1.966 sum 17.086 -15.892 -7.496 24.509 Atomic orbital electron populations 1.70073 1.08427 1.28340 1.51078 1.25816 0.95218 1.03522 0.92522 0.86033 0.82051 0.77635 0.78269 1.21336 1.22552 1.12724 1.21861 0.92417 0.93302 1.52623 0.94251 1.19459 0.90053 0.89443 0.85916 0.93793 1.86603 1.77616 1.57303 1.16504 1.22682 0.86630 0.98379 1.00503 1.64778 1.07858 1.22114 1.29176 1.23283 0.94994 1.00860 0.90067 1.22862 0.95921 0.96283 1.00953 1.21510 0.98328 0.85306 0.89345 0.89213 1.45190 1.07803 1.37628 1.47611 1.16020 0.84304 0.79729 0.79428 1.90893 1.27237 1.68745 1.64399 1.44361 1.09696 1.36180 1.45827 1.21455 0.89083 0.92846 1.00073 1.23517 1.04674 0.92825 1.01438 1.23480 1.04901 1.02353 0.90631 1.23148 0.94552 0.90347 1.01276 0.92502 0.78738 0.94790 0.90990 0.93705 0.91211 0.90108 0.90840 0.75639 0.75238 0.86517 0.87290 0.87816 0.87446 0.86937 0.92175 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 2 C 0.03 1.65 5.47 84.66 0.46 2.12 16 3 Si 0.94 45.15 26.99 68.60 1.85 47.00 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.21 -9.54 5.30 99.48 0.53 -9.01 16 7 C -0.56 -30.85 9.34 25.60 0.24 -30.61 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C 0.21 9.36 2.35 29.85 0.07 9.43 16 10 H 0.04 2.05 6.79 -2.39 -0.02 2.03 16 11 O -0.57 -25.09 10.01 -148.98 -1.49 -26.58 16 12 C 0.05 1.67 4.31 86.30 0.37 2.04 16 13 N -0.51 -15.70 5.11 -882.50 -4.51 -20.21 16 14 C 0.04 1.02 5.92 86.74 0.51 1.53 16 15 C -0.12 -2.99 6.80 31.89 0.22 -2.77 16 16 C 0.16 3.67 3.31 45.87 0.15 3.83 16 17 H 0.09 2.26 7.60 -2.38 -0.02 2.24 16 18 N -0.73 -13.99 5.08 -453.62 -2.30 -16.29 16 19 C 0.71 16.11 8.56 179.06 1.53 17.64 16 20 O -0.63 -20.02 15.58 -3.98 -0.06 -20.08 16 21 N -0.71 -11.22 5.57 -457.81 -2.55 -13.77 16 22 C 0.07 1.09 6.43 44.99 0.29 1.38 16 23 C -0.19 -1.89 10.46 30.59 0.32 -1.57 16 24 C -0.18 -1.66 10.46 30.60 0.32 -1.34 16 25 C 0.04 0.83 6.44 86.45 0.56 1.38 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.37 14.25 9.04 -74.06 -0.67 13.58 16 28 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 29 H 0.07 2.55 8.08 -2.38 -0.02 2.53 16 30 H 0.04 1.24 7.81 -2.39 -0.02 1.22 16 31 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 34 H 0.41 5.86 8.32 -92.71 -0.77 5.08 16 35 H 0.41 4.08 8.84 -92.71 -0.82 3.26 16 36 H 0.12 2.30 7.40 -2.39 -0.02 2.29 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.27 7.25 -2.39 -0.02 1.26 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.68 341.61 -5.11 -76.79 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -1.39 Total: 27.59 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.05 Total: 3.08 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -9.06 Total: -107.80 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.55 Total: -46.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.85 Total: 47.00 kcal Total: -71.68 -5.11 -76.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351303150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.362 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds