Wall clock time and date at job start Fri Apr 10 2020 17:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09005 * 109.87742 * 59.55946 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47004 * 180.02562 * 20 19 17 22 22 C 1.50702 * 109.46960 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99635 * 179.97438 * 22 21 20 24 24 O 1.21275 * 120.00041 * 359.97438 * 22 21 20 25 25 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 27 27 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 28 28 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 29 29 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 30 30 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 31 31 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 32 32 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 33 33 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 34 34 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 35 35 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 36 36 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 37 37 H 1.09003 * 109.46660 * 299.99961 * 20 19 17 38 38 H 1.08996 * 109.46929 * 59.99922 * 20 19 17 39 39 H 1.09000 * 109.46624 * 299.99943 * 21 20 19 40 40 H 1.08994 * 109.47253 * 59.99731 * 21 20 19 41 41 H 0.96997 * 120.00537 * 359.97438 * 23 22 21 42 42 H 0.97004 * 119.99281 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3598 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4150 -6.8225 -0.7001 21 6 -0.9534 -7.1522 -1.3000 22 6 -1.3433 -8.5573 -0.9195 23 7 -2.5183 -9.0674 -1.3385 24 8 -0.5998 -9.2289 -0.2362 25 1 -0.4850 0.8401 -0.0004 26 1 3.5882 0.6085 1.3159 27 1 3.9853 -0.8595 2.2604 28 1 5.6145 0.4559 0.0179 29 1 6.1786 -0.1043 1.6281 30 1 6.4982 -1.7148 -0.5464 31 1 5.9823 -2.4244 1.0170 32 1 4.7845 -4.1720 -0.5977 33 1 4.0045 -3.7334 0.9409 34 1 2.2444 -3.1989 -1.2385 35 1 0.0685 -4.6965 -0.7035 36 1 0.8608 -5.3143 -2.1727 37 1 1.1575 -7.5224 -1.0834 38 1 0.3653 -6.9039 0.3857 39 1 -1.6960 -6.4522 -0.9171 40 1 -0.9032 -7.0709 -2.3858 41 1 -3.1132 -8.5301 -1.8847 42 1 -2.7691 -9.9719 -1.0938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493168070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:08 Heat of formation + Delta-G solvation = -65.122498 kcal Electronic energy + Delta-G solvation = -22548.097264 eV Core-core repulsion = 19142.180220 eV Total energy + Delta-G solvation = -3405.917044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65626 -39.14207 -37.86149 -34.20645 -33.83596 -33.68431 -32.69704 -30.01246 -29.78287 -28.14760 -25.01092 -23.88722 -22.37426 -20.88225 -20.29258 -19.82463 -19.33235 -17.63316 -17.14087 -16.64860 -16.27655 -15.96323 -15.87926 -15.17155 -14.89628 -14.53810 -13.90804 -13.82957 -13.35838 -13.05402 -12.95881 -12.56088 -12.37060 -12.02286 -11.87870 -11.72061 -11.33544 -11.30480 -11.27271 -10.90596 -10.69999 -10.59819 -10.48329 -10.19269 -10.05571 -9.87126 -9.83355 -9.58412 -9.22709 -8.65914 -8.28553 -6.84026 -6.07585 -3.56912 2.57455 3.24322 3.26586 3.38193 3.39865 3.45016 3.90525 4.44511 4.74046 4.90577 5.02229 5.07177 5.10762 5.28414 5.33352 5.42923 5.51106 5.54256 5.61669 5.71096 5.84632 5.93705 5.96178 6.11898 6.13344 6.26070 6.30830 6.35237 6.40458 6.52160 6.55497 6.63755 6.83234 6.86942 7.15548 7.17337 7.85214 8.16339 8.21157 8.25771 8.72125 8.88076 9.56271 10.17602 11.06055 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.003875 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.197651 B = 7224.531680 C = 8342.135366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.036 3.964 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.258 4.258 8 H 0.092 0.908 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.144 3.856 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.710 5.710 17 C 0.508 3.492 18 O -0.560 6.560 19 C -0.142 4.142 20 C -0.087 4.087 21 C -0.144 4.144 22 C 0.515 3.485 23 N -0.862 5.862 24 O -0.540 6.540 25 H 0.265 0.735 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.401 0.599 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -8.494 -5.846 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.165 4.165 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.109 0.891 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.037 3.963 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.364 5.364 17 C 0.294 3.706 18 O -0.440 6.440 19 C -0.182 4.182 20 C -0.125 4.125 21 C -0.184 4.184 22 C 0.300 3.700 23 N -0.426 5.426 24 O -0.416 6.416 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.229 0.771 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.562 -9.228 -4.964 10.494 hybrid contribution -0.429 1.323 -0.336 1.431 sum 0.133 -7.905 -5.300 9.518 Atomic orbital electron populations 1.69763 1.05792 1.26905 1.52148 1.25496 0.95202 0.98145 0.97700 0.86626 0.79926 0.83699 0.77061 1.21575 1.23287 1.19250 1.18683 0.80638 0.93712 1.45516 0.89135 1.44658 1.03743 1.45739 1.38725 1.21903 0.90703 0.95218 0.92944 1.22778 0.97573 0.96844 1.00235 1.22490 0.96356 0.97018 1.00138 1.21283 0.89049 0.89581 0.96427 0.93432 1.21861 0.83799 0.96718 0.98581 1.46303 1.21184 1.15161 1.53713 1.20558 0.87380 0.81987 0.80638 1.90653 1.64295 1.48325 1.40720 1.21661 0.95810 0.98684 1.02068 1.21043 0.94182 0.94919 1.02352 1.21731 1.00297 0.93320 1.03026 1.20851 0.80754 0.89559 0.78800 1.43948 1.21841 1.19527 1.57258 1.90771 1.51292 1.61788 1.37721 0.92552 0.94192 0.95168 0.91583 0.91583 0.91442 0.91312 0.93120 0.91936 0.74702 0.88322 0.89275 0.90742 0.90491 0.88401 0.88719 0.77100 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.97 55.49 0.78 -25.16 16 2 C 0.04 0.97 5.48 -17.43 -0.10 0.87 16 3 Si 0.90 21.65 24.76 -169.99 -4.21 17.44 16 4 H -0.29 -6.95 6.86 56.52 0.39 -6.57 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.25 6.76 56.52 0.38 -5.87 16 7 C -0.26 -6.61 9.42 -15.06 -0.14 -6.75 16 8 H 0.09 2.36 5.44 -52.48 -0.29 2.08 16 9 N -0.60 -13.49 2.65 -162.56 -0.43 -13.92 16 10 C 0.12 2.43 6.14 -2.53 -0.02 2.42 16 11 C -0.14 -2.26 7.09 -24.58 -0.17 -2.43 16 12 C -0.12 -1.87 6.48 -24.89 -0.16 -2.03 16 13 C 0.14 2.65 3.34 -66.95 -0.22 2.43 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.12 2.14 5.19 -4.04 -0.02 2.12 16 16 N -0.71 -13.15 4.36 -60.30 -0.26 -13.41 16 17 C 0.51 9.39 7.83 -10.98 -0.09 9.30 16 18 O -0.56 -12.22 15.97 5.56 0.09 -12.14 16 19 C -0.14 -2.01 5.70 -27.88 -0.16 -2.17 16 20 C -0.09 -1.22 3.79 -26.73 -0.10 -1.32 16 21 C -0.14 -1.43 5.70 -27.88 -0.16 -1.59 16 22 C 0.51 5.98 8.10 -10.99 -0.09 5.89 16 23 N -0.86 -6.13 8.87 31.22 0.28 -5.86 16 24 O -0.54 -9.02 16.82 5.56 0.09 -8.93 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.04 0.90 3.20 -51.93 -0.17 0.74 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 34 H 0.41 7.72 6.07 -40.82 -0.25 7.48 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 38 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 42 H 0.40 2.52 8.93 -40.82 -0.36 2.15 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -34.56 336.46 -6.50 -41.06 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.48 Total: 9.10 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.43 Total: 6.74 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.36 Total: -58.35 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.18 Total: -21.06 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.21 Total: 17.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.56 -6.50 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493168070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.064 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds