Wall clock time and date at job start Fri Apr 10 2020 17:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09005 * 109.87742 * 59.55946 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47004 * 180.02562 * 20 19 17 22 22 C 1.50702 * 109.46960 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99635 * 179.97438 * 22 21 20 24 24 O 1.21275 * 120.00041 * 359.97438 * 22 21 20 25 25 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 27 27 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 28 28 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 29 29 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 30 30 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 31 31 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 32 32 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 33 33 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 34 34 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 35 35 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 36 36 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 37 37 H 1.09003 * 109.46660 * 299.99961 * 20 19 17 38 38 H 1.08996 * 109.46929 * 59.99922 * 20 19 17 39 39 H 1.09000 * 109.46624 * 299.99943 * 21 20 19 40 40 H 1.08994 * 109.47253 * 59.99731 * 21 20 19 41 41 H 0.96997 * 120.00537 * 359.97438 * 23 22 21 42 42 H 0.97004 * 119.99281 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3598 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4150 -6.8225 -0.7001 21 6 -0.9534 -7.1522 -1.3000 22 6 -1.3433 -8.5573 -0.9195 23 7 -2.5183 -9.0674 -1.3385 24 8 -0.5998 -9.2289 -0.2362 25 1 -0.4850 0.8401 -0.0004 26 1 3.5882 0.6085 1.3159 27 1 3.9853 -0.8595 2.2604 28 1 5.6145 0.4559 0.0179 29 1 6.1786 -0.1043 1.6281 30 1 6.4982 -1.7148 -0.5464 31 1 5.9823 -2.4244 1.0170 32 1 4.7845 -4.1720 -0.5977 33 1 4.0045 -3.7334 0.9409 34 1 2.2444 -3.1989 -1.2385 35 1 0.0685 -4.6965 -0.7035 36 1 0.8608 -5.3143 -2.1727 37 1 1.1575 -7.5224 -1.0834 38 1 0.3653 -6.9039 0.3857 39 1 -1.6960 -6.4522 -0.9171 40 1 -0.9032 -7.0709 -2.3858 41 1 -3.1132 -8.5301 -1.8847 42 1 -2.7691 -9.9719 -1.0938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493168070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:08 Heat of formation + Delta-G solvation = -92.926190 kcal Electronic energy + Delta-G solvation = -22549.302922 eV Core-core repulsion = 19142.180220 eV Total energy + Delta-G solvation = -3407.122703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87814 -40.37462 -39.38953 -35.52011 -35.14179 -34.60945 -34.55054 -31.75577 -31.18277 -29.29073 -26.58218 -25.52274 -23.61785 -22.29712 -21.39620 -21.19516 -20.79235 -19.06871 -18.25502 -17.92533 -17.59886 -17.33460 -17.06147 -16.67913 -16.31153 -15.97821 -15.39006 -14.94601 -14.86927 -14.64741 -14.34769 -14.14663 -13.82433 -13.58604 -13.04870 -12.99724 -12.92992 -12.82000 -12.54612 -12.40473 -12.24517 -11.99547 -11.73420 -11.69298 -11.50057 -11.36036 -11.07486 -10.71522 -10.66098 -10.61709 -9.84740 -8.67996 -8.12547 -5.58343 1.33838 1.43028 1.53886 1.69028 1.77444 2.37957 2.47858 2.76519 3.11284 3.36841 3.78555 3.93337 3.99668 4.04505 4.08753 4.12922 4.17370 4.33685 4.50123 4.61302 4.65049 4.70403 4.72806 4.77111 4.82759 4.90648 5.00350 5.01073 5.15480 5.18765 5.32529 5.38816 5.49118 5.66774 5.94516 5.94760 6.24997 6.51974 6.72817 6.85504 7.39481 7.41436 7.57992 8.26361 9.03487 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.003875 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.197651 B = 7224.531680 C = 8342.135366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.018 4.018 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.315 1.315 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.112 4.112 13 C 0.141 3.859 14 H 0.053 0.947 15 C 0.120 3.880 16 N -0.711 5.711 17 C 0.499 3.501 18 O -0.600 6.600 19 C -0.132 4.132 20 C -0.081 4.081 21 C -0.135 4.135 22 C 0.510 3.490 23 N -0.837 5.837 24 O -0.602 6.602 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.420 0.580 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -8.153 -7.361 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.215 4.215 3 Si 0.778 3.222 4 H -0.220 1.220 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.150 4.150 13 C 0.035 3.965 14 H 0.071 0.929 15 C -0.006 4.006 16 N -0.364 5.364 17 C 0.287 3.713 18 O -0.482 6.482 19 C -0.171 4.171 20 C -0.120 4.120 21 C -0.175 4.175 22 C 0.296 3.704 23 N -0.401 5.401 24 O -0.483 6.483 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.252 0.748 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.532 -8.879 -6.519 11.122 hybrid contribution -0.742 1.120 0.163 1.353 sum 0.790 -7.759 -6.357 10.061 Atomic orbital electron populations 1.69871 1.07094 1.27145 1.55099 1.26042 0.95710 1.00886 0.98881 0.85783 0.79332 0.80443 0.76596 1.22023 1.24393 1.17602 1.18807 0.82319 0.93153 1.42791 0.90303 1.44845 1.03439 1.46456 1.39787 1.22069 0.93519 0.93799 0.92698 1.22749 0.94751 0.97572 1.01302 1.22523 0.94994 0.96287 1.01226 1.21479 0.89913 0.88455 0.96650 0.92893 1.21825 0.84369 0.97205 0.97233 1.46380 1.21354 1.15178 1.53461 1.21352 0.88598 0.81364 0.79978 1.90632 1.65667 1.49398 1.42498 1.21675 0.93033 0.98521 1.03917 1.20906 0.96366 0.94411 1.00280 1.21702 0.98069 0.92711 1.04976 1.21159 0.81212 0.89912 0.78094 1.43738 1.20520 1.19917 1.55964 1.90754 1.53467 1.63339 1.40768 0.92992 0.95965 0.95661 0.91496 0.88485 0.88103 0.90276 0.91266 0.94400 0.74741 0.87904 0.85694 0.92767 0.94096 0.86212 0.85087 0.74826 0.76459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.29 13.97 21.65 0.30 -54.99 16 2 C -0.02 -1.01 5.48 84.86 0.46 -0.54 16 3 Si 0.95 44.72 24.76 68.60 1.70 46.42 16 4 H -0.29 -13.80 6.86 99.48 0.68 -13.11 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 6 H -0.25 -11.06 6.76 99.48 0.67 -10.39 16 7 C -0.24 -12.36 9.42 84.03 0.79 -11.57 16 8 H 0.08 4.15 5.44 -2.91 -0.02 4.14 16 9 N -0.62 -26.97 2.65 -668.23 -1.77 -28.74 16 10 C 0.10 4.13 6.14 86.86 0.53 4.66 16 11 C -0.13 -3.70 7.09 31.99 0.23 -3.47 16 12 C -0.11 -3.00 6.48 31.79 0.21 -2.80 16 13 C 0.14 4.90 3.34 45.34 0.15 5.05 16 14 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 15 C 0.12 4.27 5.19 86.38 0.45 4.71 16 16 N -0.71 -26.03 4.36 -463.06 -2.02 -28.04 16 17 C 0.50 18.51 7.83 87.66 0.69 19.20 16 18 O -0.60 -26.83 15.97 -3.04 -0.05 -26.88 16 19 C -0.13 -3.61 5.70 29.85 0.17 -3.44 16 20 C -0.08 -2.28 3.79 30.60 0.12 -2.17 16 21 C -0.14 -2.43 5.70 29.85 0.17 -2.26 16 22 C 0.51 11.37 8.10 87.66 0.71 12.08 16 23 N -0.84 -10.21 8.87 -173.54 -1.54 -11.75 16 24 O -0.60 -20.71 16.82 -3.01 -0.05 -20.76 16 25 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 26 H 0.02 0.98 3.20 -2.39 -0.01 0.97 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.98 7.95 -2.39 -0.02 1.96 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.99 7.85 -2.39 -0.02 1.97 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.53 8.12 -2.39 -0.02 1.52 16 34 H 0.41 15.20 6.07 -92.70 -0.56 14.63 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 38 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 39 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.42 1.99 8.83 -92.71 -0.82 1.17 16 42 H 0.40 4.45 8.93 -92.71 -0.83 3.62 16 Total: -1.00 -78.58 336.46 0.04 -78.55 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -1.21 Total: 26.74 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 4.67 Total: 19.46 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.03 Total: -123.53 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.10 Total: -47.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.70 Total: 46.42 kcal Total: -78.58 0.04 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493168070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.380 kcal (2) G-P(sol) polarization free energy of solvation -78.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds