Wall clock time and date at job start Fri Apr 10 2020 17:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48492 * 109.47143 * 270.00065 * 3 2 1 5 5 H 1.48500 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48503 * 109.47091 * 149.99945 * 3 2 1 7 7 C 1.38805 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00251 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00361 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46884 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47634 * 65.00059 * 11 10 9 13 13 N 1.46500 * 109.47000 * 304.99600 * 11 10 9 14 14 C 1.34773 * 120.00432 * 300.00184 * 13 11 10 15 15 O 1.21353 * 120.00047 * 0.02562 * 14 13 11 16 16 C 1.49454 * 120.00135 * 179.72278 * 14 13 11 17 17 N 1.34777 * 120.00164 * 180.27489 * 16 14 13 18 18 O 1.21343 * 119.99752 * 0.28157 * 16 14 13 19 19 C 1.53003 * 109.46981 * 185.00361 * 11 10 9 20 20 C 1.53003 * 109.46958 * 299.99931 * 19 11 10 21 21 C 1.52995 * 109.47401 * 179.97438 * 20 19 11 22 22 C 1.53001 * 109.47258 * 59.99918 * 21 20 19 23 23 C 1.53003 * 109.46981 * 300.00339 * 22 21 20 24 24 C 1.52995 * 109.47401 * 59.99748 * 23 22 21 25 25 H 0.96992 * 120.00122 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99381 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46862 * 59.99869 * 10 9 7 28 28 H 1.08999 * 109.46798 * 299.99736 * 10 9 7 29 29 H 0.97001 * 119.99454 * 120.00919 * 13 11 10 30 30 H 0.97000 * 119.99555 * 0.02562 * 17 16 14 31 31 H 0.96991 * 120.00395 * 180.02562 * 17 16 14 32 32 H 1.09001 * 109.47184 * 59.99422 * 19 11 10 33 33 H 1.09008 * 109.47095 * 300.00313 * 20 19 11 34 34 H 1.09003 * 109.47221 * 59.99392 * 20 19 11 35 35 H 1.09001 * 109.47438 * 299.99920 * 21 20 19 36 36 H 1.09003 * 109.47199 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47429 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46894 * 59.99669 * 22 21 20 39 39 H 1.09001 * 109.46758 * 299.99969 * 23 22 21 40 40 H 1.08995 * 109.47374 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47653 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47438 * 60.00080 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0013 12 1 5.8936 -1.6981 0.9331 13 7 5.9526 -1.3225 -1.1296 14 6 5.6978 -1.7275 -2.3895 15 8 5.1895 -2.8116 -2.5873 16 6 6.0350 -0.8388 -3.5428 17 7 5.7752 -1.2415 -4.8024 18 8 6.5429 0.2453 -3.3450 19 6 6.3806 -3.5106 -0.1245 20 6 6.0295 -4.4179 1.0564 21 6 6.7932 -5.7376 0.9304 22 6 8.2975 -5.4586 0.9313 23 6 8.6486 -4.5513 -0.2497 24 6 7.8850 -3.2316 -0.1236 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3619 0.0004 27 1 3.8492 -3.0422 -0.8902 28 1 3.8486 -3.0425 0.8898 29 1 6.3586 -0.4559 -0.9714 30 1 5.3689 -2.1080 -4.9604 31 1 5.9944 -0.6649 -5.5509 32 1 6.1034 -4.0036 -1.0563 33 1 6.3066 -3.9249 1.9883 34 1 4.9579 -4.6170 1.0556 35 1 6.5157 -6.2305 -0.0014 36 1 6.5434 -6.3838 1.7720 37 1 8.8416 -6.3988 0.8410 38 1 8.5750 -4.9657 1.8631 39 1 8.3710 -5.0441 -1.1814 40 1 9.7203 -4.3528 -0.2494 41 1 8.1347 -2.5854 -0.9652 42 1 8.1625 -2.7387 0.8081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496319725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:14 Heat of formation + Delta-G solvation = -78.999216 kcal Electronic energy + Delta-G solvation = -23686.629532 eV Core-core repulsion = 20280.110749 eV Total energy + Delta-G solvation = -3406.518784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67918 -39.11347 -37.81422 -35.77748 -34.04330 -33.38740 -31.72179 -30.87629 -30.65325 -27.50269 -25.13580 -23.48622 -22.62125 -21.52242 -21.26447 -19.93226 -19.44340 -18.61235 -17.61316 -17.10365 -16.02304 -15.80316 -15.42565 -15.12322 -14.43776 -14.34758 -14.18718 -13.97626 -13.83042 -13.60826 -13.28270 -12.68383 -12.42725 -12.30077 -12.13025 -11.98169 -11.60677 -11.43682 -11.14414 -10.98936 -10.87622 -10.78334 -10.47587 -10.18468 -10.16355 -9.94365 -9.89204 -9.57316 -9.36576 -8.82917 -8.80976 -7.17054 -5.73412 -3.07974 1.59063 2.66260 3.38226 3.42033 3.42282 3.47169 3.97452 4.56068 4.61735 4.69275 4.74858 4.79627 5.06311 5.25695 5.31270 5.45783 5.47442 5.53095 5.55956 5.60870 5.66985 5.74384 5.81607 5.98402 6.00205 6.12834 6.16400 6.20486 6.23758 6.33975 6.39969 6.46915 6.56253 6.70324 6.89535 6.97973 7.50525 7.91836 8.03291 8.19817 8.45383 9.24677 9.97106 10.16780 11.45218 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.006331 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.870285 B = 4421.423294 C = 5697.327353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.753 5.753 10 C 0.139 3.861 11 C 0.142 3.858 12 H 0.090 0.910 13 N -0.689 5.689 14 C 0.513 3.487 15 O -0.508 6.508 16 C 0.513 3.487 17 N -0.824 5.824 18 O -0.528 6.528 19 C -0.101 4.101 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.111 4.111 25 H 0.258 0.742 26 H 0.358 0.642 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.408 0.592 30 H 0.414 0.586 31 H 0.407 0.593 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.911 -8.527 -3.280 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.399 5.399 10 C 0.011 3.989 11 C 0.037 3.963 12 H 0.108 0.892 13 N -0.340 5.340 14 C 0.293 3.707 15 O -0.383 6.383 16 C 0.292 3.708 17 N -0.390 5.390 18 O -0.404 6.404 19 C -0.120 4.120 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.190 0.810 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.243 0.757 30 H 0.244 0.756 31 H 0.239 0.761 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.617 -8.740 -3.085 20.796 hybrid contribution 0.530 1.642 -0.358 1.763 sum 19.147 -7.098 -3.443 20.709 Atomic orbital electron populations 1.69698 1.05036 1.25679 1.57939 1.24643 0.95204 0.97035 1.02302 0.86587 0.79147 0.85213 0.77782 1.21194 1.21718 1.20470 1.19047 0.80597 0.94677 1.42461 0.89229 1.42623 1.04002 1.02001 1.91273 1.21151 0.87480 0.89897 1.00363 1.21556 0.96681 0.90655 0.87374 0.89153 1.45620 1.61605 1.21775 1.05021 1.19800 0.79774 0.86762 0.84327 1.90708 1.40927 1.21741 1.84929 1.20379 0.78526 0.86626 0.85223 1.43502 1.64459 1.24029 1.06992 1.90785 1.42319 1.21891 1.85357 1.21542 0.94185 0.95256 1.01052 1.21592 1.00789 0.95166 0.97620 1.21512 0.94803 0.97407 1.01772 1.21536 0.96416 0.99114 0.98531 1.21501 0.99207 0.96131 0.98626 1.21543 0.94781 0.97002 1.01566 0.93144 0.80964 0.92983 0.94440 0.75656 0.75552 0.76066 0.88650 0.92035 0.90869 0.91982 0.92156 0.92512 0.92176 0.92144 0.92495 0.92393 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.91 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.76 27.74 -169.99 -4.71 18.05 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -18.07 5.24 -59.91 -0.31 -18.39 16 10 C 0.14 2.70 4.97 -4.04 -0.02 2.68 16 11 C 0.14 2.11 2.34 -67.93 -0.16 1.95 16 12 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 13 N -0.69 -10.30 3.93 -54.23 -0.21 -10.52 16 14 C 0.51 8.16 7.31 -11.59 -0.08 8.08 16 15 O -0.51 -8.77 12.74 5.49 0.07 -8.70 16 16 C 0.51 7.60 8.16 -11.58 -0.09 7.50 16 17 N -0.82 -8.89 8.87 30.90 0.27 -8.62 16 18 O -0.53 -8.96 17.31 5.50 0.10 -8.86 16 19 C -0.10 -1.28 1.56 -90.62 -0.14 -1.42 16 20 C -0.11 -1.33 4.85 -26.73 -0.13 -1.46 16 21 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 22 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 23 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 24 C -0.11 -1.21 5.05 -26.73 -0.13 -1.34 16 25 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 26 H 0.36 8.41 5.20 -40.82 -0.21 8.20 16 27 H 0.05 1.12 6.32 -51.93 -0.33 0.79 16 28 H 0.04 0.73 6.71 -51.93 -0.35 0.38 16 29 H 0.41 5.65 8.30 -40.82 -0.34 5.31 16 30 H 0.41 3.95 8.30 -40.82 -0.34 3.61 16 31 H 0.41 3.42 8.93 -40.82 -0.36 3.06 16 32 H 0.10 1.40 6.17 -51.93 -0.32 1.08 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 0.94 6.54 -51.93 -0.34 0.60 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -34.42 332.24 -6.90 -41.32 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.38 Total: 14.74 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.49 Total: 5.11 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 0.52 Total: -66.66 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.42 -6.90 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496319725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.680 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds