Wall clock time and date at job start Fri Apr 10 2020 17:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48492 * 109.47143 * 270.00065 * 3 2 1 5 5 H 1.48500 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48503 * 109.47091 * 149.99945 * 3 2 1 7 7 C 1.38805 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00251 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00361 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46884 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47634 * 65.00059 * 11 10 9 13 13 N 1.46500 * 109.47000 * 304.99600 * 11 10 9 14 14 C 1.34773 * 120.00432 * 300.00184 * 13 11 10 15 15 O 1.21353 * 120.00047 * 0.02562 * 14 13 11 16 16 C 1.49454 * 120.00135 * 179.72278 * 14 13 11 17 17 N 1.34777 * 120.00164 * 180.27489 * 16 14 13 18 18 O 1.21343 * 119.99752 * 0.28157 * 16 14 13 19 19 C 1.53003 * 109.46981 * 185.00361 * 11 10 9 20 20 C 1.53003 * 109.46958 * 299.99931 * 19 11 10 21 21 C 1.52995 * 109.47401 * 179.97438 * 20 19 11 22 22 C 1.53001 * 109.47258 * 59.99918 * 21 20 19 23 23 C 1.53003 * 109.46981 * 300.00339 * 22 21 20 24 24 C 1.52995 * 109.47401 * 59.99748 * 23 22 21 25 25 H 0.96992 * 120.00122 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99381 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46862 * 59.99869 * 10 9 7 28 28 H 1.08999 * 109.46798 * 299.99736 * 10 9 7 29 29 H 0.97001 * 119.99454 * 120.00919 * 13 11 10 30 30 H 0.97000 * 119.99555 * 0.02562 * 17 16 14 31 31 H 0.96991 * 120.00395 * 180.02562 * 17 16 14 32 32 H 1.09001 * 109.47184 * 59.99422 * 19 11 10 33 33 H 1.09008 * 109.47095 * 300.00313 * 20 19 11 34 34 H 1.09003 * 109.47221 * 59.99392 * 20 19 11 35 35 H 1.09001 * 109.47438 * 299.99920 * 21 20 19 36 36 H 1.09003 * 109.47199 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47429 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46894 * 59.99669 * 22 21 20 39 39 H 1.09001 * 109.46758 * 299.99969 * 23 22 21 40 40 H 1.08995 * 109.47374 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47653 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47438 * 60.00080 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0013 12 1 5.8936 -1.6981 0.9331 13 7 5.9526 -1.3225 -1.1296 14 6 5.6978 -1.7275 -2.3895 15 8 5.1895 -2.8116 -2.5873 16 6 6.0350 -0.8388 -3.5428 17 7 5.7752 -1.2415 -4.8024 18 8 6.5429 0.2453 -3.3450 19 6 6.3806 -3.5106 -0.1245 20 6 6.0295 -4.4179 1.0564 21 6 6.7932 -5.7376 0.9304 22 6 8.2975 -5.4586 0.9313 23 6 8.6486 -4.5513 -0.2497 24 6 7.8850 -3.2316 -0.1236 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3619 0.0004 27 1 3.8492 -3.0422 -0.8902 28 1 3.8486 -3.0425 0.8898 29 1 6.3586 -0.4559 -0.9714 30 1 5.3689 -2.1080 -4.9604 31 1 5.9944 -0.6649 -5.5509 32 1 6.1034 -4.0036 -1.0563 33 1 6.3066 -3.9249 1.9883 34 1 4.9579 -4.6170 1.0556 35 1 6.5157 -6.2305 -0.0014 36 1 6.5434 -6.3838 1.7720 37 1 8.8416 -6.3988 0.8410 38 1 8.5750 -4.9657 1.8631 39 1 8.3710 -5.0441 -1.1814 40 1 9.7203 -4.3528 -0.2494 41 1 8.1347 -2.5854 -0.9652 42 1 8.1625 -2.7387 0.8081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496319725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:13 Heat of formation + Delta-G solvation = -106.365100 kcal Electronic energy + Delta-G solvation = -23687.816206 eV Core-core repulsion = 20280.110749 eV Total energy + Delta-G solvation = -3407.705457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88457 -40.20654 -38.90193 -37.21486 -35.65472 -34.59433 -33.39951 -32.35639 -31.53074 -28.94353 -26.54753 -24.96898 -23.73664 -22.90452 -22.41696 -20.95473 -20.61405 -19.79483 -19.59897 -18.21465 -17.17618 -17.00646 -16.73267 -16.43794 -16.08971 -15.79031 -15.25725 -15.00532 -14.92557 -14.88194 -14.75910 -14.37020 -13.83451 -13.68749 -13.32379 -13.02447 -12.92772 -12.81822 -12.64792 -12.51595 -12.12735 -11.94928 -11.86257 -11.78673 -11.36197 -11.17479 -10.97371 -10.91522 -10.84849 -10.51911 -10.07402 -9.27783 -8.04516 -5.37027 0.39112 1.32832 1.37047 1.43442 1.52483 2.21197 2.44858 2.88797 3.27340 3.43375 3.59410 3.83932 3.90833 3.97347 4.13097 4.28072 4.45554 4.50203 4.53197 4.68726 4.69860 4.74131 4.82471 4.90163 5.07241 5.12956 5.21044 5.26534 5.31000 5.35602 5.42304 5.45458 5.51692 5.56928 5.67411 5.74508 5.93545 6.18740 6.35661 6.86311 7.04374 7.06018 7.81417 8.01448 9.17326 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.006331 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.870285 B = 4421.423294 C = 5697.327353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.950 3.050 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.230 4.230 8 H 0.053 0.947 9 N -0.752 5.752 10 C 0.139 3.861 11 C 0.149 3.851 12 H 0.112 0.888 13 N -0.685 5.685 14 C 0.506 3.494 15 O -0.528 6.528 16 C 0.511 3.489 17 N -0.802 5.802 18 O -0.552 6.552 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.106 4.106 25 H 0.258 0.742 26 H 0.364 0.636 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.416 0.584 30 H 0.422 0.578 31 H 0.422 0.578 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.753 -8.051 -2.894 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.777 3.223 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.361 4.361 8 H 0.071 0.929 9 N -0.397 5.397 10 C 0.012 3.988 11 C 0.044 3.956 12 H 0.130 0.870 13 N -0.337 5.337 14 C 0.287 3.713 15 O -0.404 6.404 16 C 0.290 3.710 17 N -0.368 5.368 18 O -0.430 6.430 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.143 4.143 25 H 0.066 0.934 26 H 0.197 0.803 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.253 0.747 30 H 0.253 0.747 31 H 0.256 0.744 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.509 -8.297 -2.722 23.214 hybrid contribution -0.419 1.347 -0.529 1.507 sum 21.090 -6.950 -3.251 22.442 Atomic orbital electron populations 1.69878 1.07065 1.26590 1.59892 1.25445 0.96068 1.00983 1.02804 0.85484 0.79012 0.79938 0.77830 1.21264 1.21913 1.17129 1.19002 0.82774 0.93312 1.40980 0.92885 1.42564 1.02342 1.03857 1.90960 1.21231 0.90442 0.87820 0.99274 1.21519 0.93441 0.92263 0.88342 0.87023 1.45628 1.61170 1.22091 1.04784 1.20127 0.79462 0.86715 0.85011 1.90709 1.41836 1.22587 1.85299 1.20234 0.78722 0.86171 0.85889 1.43386 1.62809 1.24383 1.06247 1.90775 1.43851 1.22657 1.85737 1.21427 0.95400 0.93835 1.00428 1.21589 0.99892 0.96048 0.97652 1.21498 0.95587 0.96487 1.01758 1.21522 0.95399 0.99706 0.98593 1.21495 0.99870 0.95430 0.98519 1.21500 0.93041 0.97782 1.02026 0.93360 0.80320 0.95233 0.94180 0.74736 0.74656 0.74392 0.90863 0.90855 0.92830 0.92888 0.91172 0.91283 0.91322 0.93036 0.91009 0.92911 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.32 13.97 21.65 0.30 -64.02 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.95 46.59 27.74 68.60 1.90 48.50 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 7 C -0.23 -13.48 10.47 84.03 0.88 -12.60 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 9 N -0.75 -35.61 5.24 -343.45 -1.80 -37.41 16 10 C 0.14 5.40 4.97 86.38 0.43 5.83 16 11 C 0.15 4.20 2.34 44.99 0.11 4.31 16 12 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 13 N -0.68 -19.43 3.93 -443.86 -1.74 -21.17 16 14 C 0.51 15.66 7.31 87.27 0.64 16.29 16 15 O -0.53 -18.18 12.74 -3.26 -0.04 -18.23 16 16 C 0.51 14.45 8.16 87.27 0.71 15.16 16 17 N -0.80 -16.05 8.87 -174.50 -1.55 -17.60 16 18 O -0.55 -17.87 17.31 -3.23 -0.06 -17.92 16 19 C -0.09 -2.19 1.56 -10.79 -0.02 -2.21 16 20 C -0.11 -2.51 4.85 30.59 0.15 -2.36 16 21 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 22 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 23 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 24 C -0.11 -2.04 5.05 30.59 0.15 -1.89 16 25 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 26 H 0.36 16.35 5.20 -92.70 -0.48 15.87 16 27 H 0.03 1.30 6.32 -2.39 -0.02 1.29 16 28 H 0.04 1.56 6.71 -2.39 -0.02 1.54 16 29 H 0.42 10.58 8.30 -92.71 -0.77 9.81 16 30 H 0.42 7.48 8.30 -92.71 -0.77 6.71 16 31 H 0.42 6.26 8.93 -92.71 -0.83 5.43 16 32 H 0.07 2.13 6.17 -2.39 -0.01 2.11 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.05 1.37 6.54 -2.39 -0.02 1.36 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.97 332.24 -0.76 -75.73 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -1.84 Total: 38.15 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.06 Total: 13.98 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -4.79 Total: -140.20 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.10 Total: -36.15 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.50 kcal Total: -74.97 -0.76 -75.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496319725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.639 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds