Wall clock time and date at job start Fri Apr 10 2020 17:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48491 * 109.47468 * 270.00301 * 3 2 1 5 5 H 1.48496 * 109.46762 * 30.00691 * 3 2 1 6 6 H 1.48502 * 109.46677 * 150.00397 * 3 2 1 7 7 C 1.38810 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00439 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47226 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47815 * 295.00249 * 11 10 9 13 13 N 1.46506 * 109.47268 * 55.00343 * 11 10 9 14 14 C 1.34774 * 119.99928 * 235.06094 * 13 11 10 15 15 O 1.21348 * 120.00350 * 5.01740 * 14 13 11 16 16 C 1.49448 * 120.00179 * 185.02375 * 14 13 11 17 17 N 1.34775 * 120.00133 * 179.97438 * 16 14 13 18 18 O 1.21357 * 119.99900 * 359.97438 * 16 14 13 19 19 C 1.53002 * 109.47207 * 174.99948 * 11 10 9 20 20 C 1.53000 * 109.47160 * 294.47427 * 19 11 10 21 21 C 1.52994 * 109.47297 * 179.97438 * 20 19 11 22 22 C 1.53005 * 109.47225 * 59.99862 * 21 20 19 23 23 C 1.53000 * 109.46886 * 299.99932 * 22 21 20 24 24 C 1.52998 * 109.47213 * 174.47284 * 19 11 10 25 25 H 0.96995 * 120.00026 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46650 * 300.00226 * 10 9 7 28 28 H 1.09003 * 109.46703 * 60.00046 * 10 9 7 29 29 H 0.96996 * 119.99778 * 55.05285 * 13 11 10 30 30 H 0.96997 * 120.00359 * 0.02562 * 17 16 14 31 31 H 0.97002 * 119.99866 * 179.97438 * 17 16 14 32 32 H 1.08999 * 109.46801 * 54.47170 * 19 11 10 33 33 H 1.09000 * 109.47075 * 300.00143 * 20 19 11 34 34 H 1.08998 * 109.47205 * 59.99338 * 20 19 11 35 35 H 1.09000 * 109.47316 * 300.00168 * 21 20 19 36 36 H 1.09000 * 109.47283 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.46927 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46724 * 59.99943 * 22 21 20 39 39 H 1.08995 * 109.46934 * 300.00084 * 23 22 21 40 40 H 1.09001 * 109.46399 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47402 * 299.99680 * 24 19 11 42 42 H 1.08999 * 109.47330 * 60.00210 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4979 -4.8135 0.9317 13 7 0.1439 -4.6764 -1.1311 14 6 -1.1871 -4.6630 -0.9197 15 8 -1.6217 -4.6778 0.2132 16 6 -2.1278 -4.6299 -2.0805 17 7 -3.4588 -4.6171 -1.8691 18 8 -1.6931 -4.6147 -3.2135 19 6 1.8246 -6.1412 -0.1256 20 6 2.5077 -6.2084 -1.4930 21 6 3.2689 -7.5296 -1.6186 22 6 2.2901 -8.6974 -1.4795 23 6 1.6072 -8.6302 -0.1120 24 6 0.8454 -7.3086 0.0132 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6847 -3.7145 -0.8905 28 1 2.6847 -3.7146 0.8895 29 1 0.4928 -4.5910 -2.0321 30 1 -3.8062 -4.6288 -0.9636 31 1 -4.0693 -4.5953 -2.6226 32 1 2.5776 -6.2031 0.6601 33 1 1.7547 -6.1464 -2.2787 34 1 3.2052 -5.3767 -1.5920 35 1 4.0219 -7.5911 -0.8329 36 1 3.7551 -7.5776 -2.5929 37 1 2.8325 -9.6386 -1.5693 38 1 1.5371 -8.6358 -2.2651 39 1 2.3602 -8.6917 0.6736 40 1 0.9096 -9.4619 -0.0132 41 1 0.3588 -7.2608 0.9874 42 1 0.0924 -7.2467 -0.7725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496319727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:15 Heat of formation + Delta-G solvation = -85.655448 kcal Electronic energy + Delta-G solvation = -23521.255170 eV Core-core repulsion = 20114.447750 eV Total energy + Delta-G solvation = -3406.807420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47951 -39.05860 -37.78129 -35.70512 -33.90681 -33.30900 -31.44336 -30.78768 -30.50348 -27.27731 -24.90031 -23.70223 -22.82764 -21.77604 -20.54604 -20.23938 -19.28887 -18.45222 -17.17438 -16.90301 -15.96786 -15.67275 -15.44956 -14.87122 -14.60387 -14.18834 -14.15956 -14.04897 -13.58788 -13.37743 -13.20276 -13.06223 -12.42768 -12.25973 -12.04071 -11.72204 -11.46133 -11.13846 -11.08541 -10.92141 -10.83975 -10.75132 -10.44384 -10.22346 -10.05338 -9.84003 -9.78024 -9.70939 -9.40501 -8.85350 -8.69420 -6.89787 -5.73100 -3.02430 1.70709 2.79082 3.45409 3.50061 3.52085 3.53068 4.13743 4.55681 4.70773 4.73674 4.76925 4.83745 5.17353 5.22741 5.34834 5.45477 5.53354 5.54799 5.58978 5.67433 5.81783 5.87114 5.95215 6.02418 6.11663 6.13633 6.18191 6.26413 6.32947 6.41747 6.42601 6.51270 6.58345 6.68891 6.85126 7.07457 7.62486 7.71424 8.04655 8.32199 8.44573 9.56130 10.13478 10.48254 11.49315 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.005732 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.858448 B = 4883.758840 C = 6258.972326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.142 3.858 11 C 0.133 3.867 12 H 0.103 0.897 13 N -0.675 5.675 14 C 0.510 3.490 15 O -0.522 6.522 16 C 0.516 3.484 17 N -0.825 5.825 18 O -0.525 6.525 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.254 0.746 26 H 0.385 0.615 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.411 0.589 30 H 0.413 0.587 31 H 0.407 0.593 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -17.717 -2.680 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.013 3.987 11 C 0.028 3.972 12 H 0.121 0.879 13 N -0.327 5.327 14 C 0.290 3.710 15 O -0.399 6.399 16 C 0.295 3.705 17 N -0.391 5.391 18 O -0.400 6.400 19 C -0.111 4.111 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.149 4.149 25 H 0.064 0.936 26 H 0.219 0.781 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.247 0.753 30 H 0.244 0.756 31 H 0.239 0.761 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.410 -17.609 -2.504 17.791 hybrid contribution -0.194 1.140 -0.337 1.205 sum -0.604 -16.469 -2.840 16.723 Atomic orbital electron populations 1.69677 1.05116 1.25567 1.57513 1.24747 0.95490 0.97682 1.02961 0.86190 0.78624 0.83902 0.77460 1.21771 1.21815 1.20778 1.19206 0.90972 0.84121 1.42914 0.91181 1.42295 1.05955 0.99667 1.89413 1.21059 0.93173 0.85645 0.98789 1.21535 0.90844 0.94473 0.90300 0.87861 1.45604 1.04594 1.70444 1.12044 1.19869 0.84087 0.78163 0.88906 1.90749 1.77227 1.48683 1.23194 1.20283 0.84182 0.76546 0.89459 1.43490 1.06393 1.75693 1.13498 1.90789 1.77518 1.47940 1.23800 1.21483 0.97494 0.93705 0.98462 1.21670 0.99620 0.97596 0.96926 1.21510 0.97823 0.94671 1.01419 1.21543 0.98618 0.98023 0.97526 1.21527 0.99267 0.97340 0.97333 1.21550 0.97722 0.93760 1.01889 0.93570 0.78087 0.95531 0.95095 0.75289 0.75632 0.76136 0.89817 0.91877 0.90937 0.92062 0.92238 0.92528 0.92191 0.92066 0.92453 0.91891 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.58 5.43 -59.91 -0.33 -18.91 16 10 C 0.14 2.76 5.83 -4.04 -0.02 2.74 16 11 C 0.13 2.14 2.18 -67.93 -0.15 2.00 16 12 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 13 N -0.67 -11.06 3.40 -54.24 -0.18 -11.25 16 14 C 0.51 8.78 7.82 -11.59 -0.09 8.69 16 15 O -0.52 -9.90 15.82 5.50 0.09 -9.82 16 16 C 0.52 8.13 8.16 -11.59 -0.09 8.04 16 17 N -0.83 -9.53 8.87 30.90 0.27 -9.26 16 18 O -0.53 -9.39 17.32 5.49 0.10 -9.29 16 19 C -0.09 -1.14 2.01 -90.62 -0.18 -1.32 16 20 C -0.12 -1.41 4.64 -26.73 -0.12 -1.53 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.15 5.93 -26.70 -0.16 -1.31 16 24 C -0.11 -1.30 5.10 -26.70 -0.14 -1.44 16 25 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.39 10.63 7.33 -40.82 -0.30 10.33 16 27 H 0.03 0.51 6.37 -51.93 -0.33 0.18 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.41 6.62 7.07 -40.82 -0.29 6.33 16 30 H 0.41 4.28 8.30 -40.82 -0.34 3.94 16 31 H 0.41 3.67 8.93 -40.82 -0.36 3.31 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.77 6.85 -51.93 -0.36 0.41 16 34 H 0.07 0.89 6.48 -51.93 -0.34 0.56 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.75 7.71 -51.93 -0.40 0.35 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -33.43 339.14 -7.19 -40.61 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -6.42 Total: 17.29 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.52 Total: 5.84 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: 0.49 Total: -67.45 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.18 Total: -19.11 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.43 -7.19 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496319727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.044 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds