Wall clock time and date at job start Fri Apr 10 2020 17:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46956 * 2 1 4 4 C 1.53005 * 109.46827 * 240.00535 * 2 1 3 5 5 N 1.46495 * 109.47445 * 120.00559 * 2 1 3 6 6 N 1.29019 * 126.43785 * 239.34328 * 5 2 1 7 7 N 1.28733 * 108.81320 * 180.02562 * 6 5 2 8 8 N 1.28844 * 109.39434 * 359.76708 * 7 6 5 9 9 C 1.31073 * 107.99072 * 0.37184 * 8 7 6 10 10 C 1.50700 * 126.66336 * 179.89620 * 9 8 7 11 11 N 1.46497 * 109.47169 * 296.92839 * 10 9 8 12 12 C 1.36936 * 120.00323 * 86.41679 * 11 10 9 13 13 H 1.08002 * 119.99691 * 337.89444 * 12 11 10 14 14 C 1.38814 * 119.99826 * 158.17410 * 12 11 10 15 15 N 1.31614 * 120.00006 * 354.00702 * 14 12 11 16 16 Si 1.86802 * 119.99565 * 174.01004 * 14 12 11 17 17 H 1.48502 * 109.47068 * 59.99882 * 16 14 12 18 18 H 1.48503 * 109.47026 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47356 * 299.99801 * 16 14 12 20 20 C 1.46508 * 119.99673 * 266.41491 * 11 10 9 21 21 C 1.50695 * 109.47101 * 277.23877 * 20 11 10 22 22 O 1.20825 * 120.00235 * 359.97438 * 21 20 11 23 23 O 1.34230 * 120.00113 * 179.97438 * 21 20 11 24 24 H 1.09009 * 109.47115 * 305.11182 * 1 2 3 25 25 H 1.08999 * 109.47756 * 65.10854 * 1 2 3 26 26 H 1.08997 * 109.47114 * 185.11509 * 1 2 3 27 27 H 1.09001 * 109.47019 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47240 * 300.00236 * 3 2 1 29 29 H 1.08995 * 109.46837 * 60.00620 * 3 2 1 30 30 H 1.09002 * 109.47016 * 307.97562 * 4 2 1 31 31 H 1.08997 * 109.46981 * 67.97628 * 4 2 1 32 32 H 1.08999 * 109.47109 * 187.97280 * 4 2 1 33 33 H 1.08992 * 109.47190 * 176.92129 * 10 9 8 34 34 H 1.09006 * 109.46536 * 56.92215 * 10 9 8 35 35 H 0.97004 * 119.99545 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46989 * 37.24141 * 20 11 10 37 37 H 1.09001 * 109.46513 * 157.23681 * 20 11 10 38 38 H 0.96701 * 117.00240 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0184 -0.6907 1.1960 6 7 2.7728 -0.1905 2.1154 7 7 2.9949 -1.0926 3.0065 8 7 2.3854 -2.1789 2.6769 9 6 1.7648 -1.9664 1.5421 10 6 0.9251 -2.9564 0.7766 11 7 1.7622 -4.0808 0.3511 12 6 1.9624 -5.1424 1.1926 13 1 1.8260 -5.0209 2.2570 14 6 2.3465 -6.3731 0.6780 15 7 2.4038 -6.5529 -0.6245 16 14 2.7817 -7.7741 1.8344 17 1 1.6100 -8.0924 2.6894 18 1 3.1553 -8.9727 1.0412 19 1 3.9253 -7.3712 2.6919 20 6 2.3852 -4.0695 -0.9749 21 6 1.3904 -4.5468 -2.0013 22 8 0.2757 -4.8644 -1.6603 23 8 1.7428 -4.6192 -3.2945 24 1 -0.3634 0.5911 0.8407 25 1 -0.3634 0.4325 -0.9322 26 1 -0.3633 -1.0235 0.0916 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.5648 -1.6994 -1.3236 31 1 1.7977 -0.1315 -2.1335 32 1 3.1206 -0.8463 -1.1810 33 1 0.4978 -2.4694 -0.0998 34 1 0.1222 -3.3229 1.4163 35 1 2.6725 -7.4128 -0.9840 36 1 2.7011 -3.0553 -1.2192 37 1 3.2523 -4.7300 -0.9745 38 1 1.0708 -4.9315 -3.9158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590613729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:22 Heat of formation + Delta-G solvation = 32.505916 kcal Electronic energy + Delta-G solvation = -24061.421666 eV Core-core repulsion = 20556.197764 eV Total energy + Delta-G solvation = -3505.223902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.07321 -40.62624 -38.92499 -37.75197 -36.30447 -34.41424 -33.73504 -32.57319 -29.72256 -28.94103 -28.41652 -27.86010 -25.23053 -24.64885 -23.24581 -21.85404 -21.34329 -18.98897 -18.53269 -17.93842 -17.75587 -17.27498 -16.98550 -16.11184 -15.90510 -15.76300 -15.44607 -15.16047 -14.89846 -14.19256 -13.97018 -13.59399 -13.50799 -13.41162 -13.20045 -13.07447 -12.90258 -12.83125 -12.77098 -12.61106 -12.42650 -12.22162 -12.08306 -11.98927 -11.89545 -11.59420 -11.57384 -11.22783 -10.88119 -10.65489 -9.14216 -7.99621 -5.45336 0.36146 1.13213 1.33369 1.48380 1.49157 1.56274 1.96176 2.43781 2.72321 3.12672 3.20889 3.35777 3.47418 3.60146 3.71261 3.73121 4.38944 4.41438 4.43626 4.51217 4.56777 4.59926 4.65584 4.73650 4.74546 4.79177 4.89910 5.09419 5.12458 5.17638 5.20930 5.31158 5.51660 5.63853 6.13453 6.17975 6.97038 7.53878 7.69241 7.75459 7.99091 9.06603 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.007353 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.482797 B = 3806.856329 C = 4976.013601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 C -0.141 4.141 4 C -0.170 4.170 5 N -0.288 5.288 6 N -0.107 5.107 7 N -0.123 5.123 8 N -0.328 5.328 9 C 0.182 3.818 10 C 0.222 3.778 11 N -0.562 5.562 12 C -0.255 4.255 13 H 0.076 0.924 14 C -0.038 4.038 15 N -0.932 5.932 16 Si 0.972 3.028 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.180 3.820 21 C 0.490 3.510 22 O -0.553 6.553 23 O -0.530 6.530 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 14.686 -7.564 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 C -0.198 4.198 4 C -0.228 4.228 5 N -0.094 5.094 6 N -0.093 5.093 7 N -0.117 5.117 8 N -0.177 5.177 9 C -0.099 4.099 10 C 0.090 3.910 11 N -0.281 5.281 12 C -0.384 4.384 13 H 0.094 0.906 14 C -0.233 4.233 15 N -0.579 5.579 16 Si 0.801 3.199 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.209 1.209 20 C 0.052 3.948 21 C 0.332 3.668 22 O -0.443 6.443 23 O -0.342 6.342 24 H 0.090 0.910 25 H 0.144 0.856 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.934 14.950 -6.162 16.434 hybrid contribution -0.528 -1.728 -0.318 1.835 sum -3.462 13.222 -6.480 15.126 Atomic orbital electron populations 1.22486 0.89759 1.03966 1.06242 1.21822 0.96976 0.94823 0.79434 1.22028 1.02143 0.90533 1.05135 1.22595 1.01787 1.01685 0.96710 1.49332 1.31840 1.09337 1.18846 1.78532 1.10239 1.23110 0.97372 1.78510 1.18716 0.94844 1.19602 1.74957 1.11306 1.18699 1.12747 1.28004 1.00856 0.86920 0.94151 1.19649 0.89303 0.85225 0.96776 1.43719 1.54424 1.17548 1.12359 1.19484 1.40771 0.88149 0.89991 0.90591 1.25545 1.01254 0.99269 0.97189 1.69794 1.53046 1.24137 1.10923 0.85263 0.78030 0.78600 0.78021 1.20706 1.21656 1.20909 1.20421 0.93823 0.99394 0.81138 1.24843 0.87883 0.72722 0.81322 1.90508 1.25140 1.47754 1.80897 1.84531 1.49514 1.80450 1.19676 0.91049 0.85557 0.91892 0.92065 0.86241 0.91578 0.92181 0.85245 0.92350 0.87870 0.89889 0.93704 0.90379 0.87972 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 8.45 71.98 0.61 -2.02 16 2 C 0.15 3.03 1.06 3.61 0.00 3.04 16 3 C -0.14 -2.14 7.96 71.98 0.57 -1.57 16 4 C -0.17 -3.22 7.47 71.98 0.54 -2.68 16 5 N -0.29 -8.99 3.21 -298.28 -0.96 -9.95 16 6 N -0.11 -3.83 12.34 37.02 0.46 -3.37 16 7 N -0.12 -5.24 13.43 37.01 0.50 -4.75 16 8 N -0.33 -14.62 12.36 -50.45 -0.62 -15.24 16 9 C 0.18 6.90 7.19 138.13 0.99 7.89 16 10 C 0.22 8.41 4.96 85.63 0.42 8.83 16 11 N -0.56 -25.86 2.04 -710.69 -1.45 -27.30 16 12 C -0.25 -13.48 9.70 84.03 0.82 -12.67 16 13 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 14 C -0.04 -2.04 5.20 84.86 0.44 -1.59 16 15 N -0.93 -50.72 8.85 21.65 0.19 -50.53 16 16 Si 0.97 45.33 29.56 68.60 2.03 47.36 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 C 0.18 7.74 5.05 85.63 0.43 8.18 16 21 C 0.49 20.79 6.53 71.23 0.47 21.26 16 22 O -0.55 -26.93 16.98 21.97 0.37 -26.56 16 23 O -0.53 -18.27 13.42 -51.42 -0.69 -18.96 16 24 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.21 5.25 -2.39 -0.01 1.20 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.40 3.77 -2.39 -0.01 1.39 16 31 H 0.13 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.06 1.28 8.03 -2.39 -0.02 1.26 16 33 H 0.10 3.27 3.76 -2.39 -0.01 3.26 16 34 H 0.08 3.27 8.07 -2.38 -0.02 3.25 16 35 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.08 2.80 5.32 -2.39 -0.01 2.78 16 37 H 0.10 5.06 6.15 -2.39 -0.01 5.05 16 38 H 0.41 10.40 9.10 -74.06 -0.67 9.73 16 Total: -1.00 -72.21 311.51 5.56 -66.64 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.44 Total: 13.99 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 5.30 Total: 28.66 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -1.88 Total: -111.14 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.32 Total: -45.51 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.21 5.56 -66.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590613729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.151 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds