Wall clock time and date at job start Fri Apr 10 2020 17:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00077 * 2 1 4 4 C 1.53001 * 109.47186 * 270.00565 * 3 2 1 5 5 H 1.09005 * 109.47362 * 59.99846 * 4 3 2 6 6 O 1.42905 * 109.47113 * 299.99876 * 4 3 2 7 7 C 1.52999 * 109.47246 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47171 * 184.99980 * 7 4 3 9 9 C 1.36938 * 119.99927 * 180.02562 * 8 7 4 10 10 H 1.08004 * 119.99774 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00033 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00158 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00311 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46601 * 59.99948 * 13 11 9 15 15 H 1.48496 * 109.47363 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46805 * 300.00255 * 13 11 9 17 17 C 1.34773 * 120.00201 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00442 * 179.97438 * 17 2 1 19 19 C 1.50705 * 119.99762 * 359.97438 * 17 2 1 20 20 N 1.46500 * 109.47081 * 180.02562 * 19 17 2 21 21 C 1.34429 * 126.81895 * 124.99841 * 20 19 17 22 22 N 1.30837 * 108.07952 * 180.02562 * 21 20 19 23 23 C 1.33246 * 109.82318 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94935 * 0.27015 * 23 22 21 25 25 H 1.09004 * 109.46493 * 269.99739 * 1 2 3 26 26 H 1.08996 * 109.47228 * 29.99514 * 1 2 3 27 27 H 1.08998 * 109.47136 * 149.99971 * 1 2 3 28 28 H 1.09004 * 109.47012 * 30.00182 * 3 2 1 29 29 H 1.08993 * 109.47244 * 150.00662 * 3 2 1 30 30 H 0.96707 * 113.99738 * 300.00314 * 6 4 3 31 31 H 1.09002 * 109.47073 * 304.99486 * 7 4 3 32 32 H 1.08999 * 109.47168 * 64.99873 * 7 4 3 33 33 H 0.96995 * 120.00025 * 359.97438 * 8 7 4 34 34 H 0.97003 * 120.00578 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.47196 * 60.00345 * 19 17 2 36 36 H 1.08995 * 109.47509 * 300.00521 * 19 17 2 37 37 H 1.08000 * 125.96340 * 359.97438 * 21 20 19 38 38 H 1.08002 * 125.52127 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1163 7 6 3.2169 3.0358 -1.4425 8 7 3.3567 3.5189 -2.8185 9 6 4.0109 4.6958 -3.0678 10 1 4.4235 5.2680 -2.2500 11 6 4.1438 5.1533 -4.3716 12 7 3.6415 4.4557 -5.3683 13 14 5.0357 6.7590 -4.7117 14 1 6.4340 6.6620 -4.2212 15 1 5.0415 7.0222 -6.1731 16 1 4.3412 7.8689 -4.0110 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3374 -3.5858 -0.0005 21 6 2.3918 -4.5992 0.8810 22 7 3.3805 -5.3840 0.5370 23 6 3.9775 -4.9067 -0.5544 24 7 3.3779 -3.8037 -0.9183 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5137 30 1 4.0873 0.5461 -1.7127 31 1 2.6691 3.7712 -0.8532 32 1 4.2052 2.8852 -1.0081 33 1 2.9864 3.0048 -3.5530 34 1 3.7346 4.7752 -6.2794 35 1 0.7584 -2.5299 -0.8903 36 1 0.7590 -2.5302 0.8896 37 1 1.7345 -4.7405 1.7263 38 1 4.8231 -5.3557 -1.0543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677133073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:34 Heat of formation + Delta-G solvation = 36.378961 kcal Electronic energy + Delta-G solvation = -22172.751979 eV Core-core repulsion = 18667.696025 eV Total energy + Delta-G solvation = -3505.055954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20769 -40.07437 -37.34813 -35.41889 -34.23936 -33.95277 -31.36187 -31.29807 -29.91652 -28.15199 -27.05829 -25.18058 -22.99708 -22.12755 -22.08930 -21.14965 -19.58371 -17.80452 -17.38966 -17.14625 -16.55328 -16.18476 -15.51899 -15.38733 -15.03939 -14.69246 -14.41967 -14.17578 -13.95782 -13.52243 -13.44808 -12.99340 -12.83406 -12.71638 -12.39799 -12.12963 -11.97915 -11.54124 -10.93195 -10.79276 -10.70522 -10.39909 -10.18081 -10.15849 -9.91208 -9.81001 -9.72530 -9.54332 -8.88066 -8.62833 -6.91013 -5.73430 -3.03117 1.46095 1.97471 2.37097 2.79189 2.86896 3.45060 3.49159 3.50686 3.98442 4.11994 4.19932 4.55933 4.58492 4.69580 4.77770 4.83993 4.94289 5.07209 5.12423 5.26081 5.36653 5.53275 5.63316 5.70750 5.96964 6.03531 6.18308 6.29322 6.34275 6.51646 6.54548 6.73381 7.11090 7.69288 7.91849 7.97157 8.20556 8.44755 9.55859 10.13729 10.49336 11.48888 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.003225 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.731566 B = 8678.872283 C = 9242.183551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.086 3.914 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.546 6.546 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.506 3.494 18 O -0.504 6.504 19 C 0.113 3.887 20 N -0.370 5.370 21 C 0.249 3.751 22 N -0.546 5.546 23 C 0.189 3.811 24 N -0.279 5.279 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.375 0.625 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.388 0.612 34 H 0.256 0.744 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.217 0.783 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 -16.122 15.922 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.351 6.351 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.291 3.709 18 O -0.377 6.377 19 C -0.013 4.013 20 N -0.161 5.161 21 C -0.047 4.047 22 N -0.273 5.273 23 C -0.114 4.114 24 N -0.105 5.105 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.222 0.778 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.223 0.777 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.234 0.766 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.144 -15.790 15.085 24.079 hybrid contribution 0.467 1.014 0.064 1.118 sum -9.677 -14.777 15.149 23.270 Atomic orbital electron populations 1.21898 0.79377 1.03994 1.01847 1.47647 1.06863 1.05809 1.73893 1.22294 0.98225 0.84165 0.98988 1.22478 0.95789 0.88432 0.90806 0.88698 1.86558 1.33128 1.58733 1.56716 1.21234 0.96784 0.92443 0.89795 1.42238 1.68101 1.25248 1.01390 1.19175 1.28352 0.97817 0.92171 0.91333 1.24762 1.01470 0.99049 0.95604 1.69672 1.50252 1.39268 0.98641 0.86253 0.79568 0.83358 0.76901 1.21249 1.21638 1.21282 1.20223 0.88408 0.84808 0.77458 1.90769 1.13238 1.86414 1.47261 1.21626 0.89779 0.83646 1.06255 1.50034 1.24780 1.19683 1.21638 1.26029 0.97274 0.85635 0.95807 1.70518 1.09791 1.31152 1.15807 1.26059 1.00579 0.91407 0.93361 1.78324 1.00593 1.18015 1.13591 0.92197 0.90147 0.91161 0.89409 0.89479 0.77781 0.95839 0.96181 0.77744 0.93433 0.86363 0.85554 0.76634 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.24 59.85 0.61 1.03 16 2 N -0.61 -6.20 2.83 -181.57 -0.51 -6.71 16 3 C 0.09 1.05 5.15 -4.04 -0.02 1.03 16 4 C 0.09 1.41 3.27 -26.73 -0.09 1.32 16 5 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 6 O -0.55 -10.51 12.09 -44.02 -0.53 -11.04 16 7 C 0.13 2.54 5.90 -4.04 -0.02 2.51 16 8 N -0.73 -19.06 5.55 -59.91 -0.33 -19.39 16 9 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 C 0.51 6.02 7.22 -10.98 -0.08 5.94 16 18 O -0.50 -8.32 14.09 -3.24 -0.05 -8.36 16 19 C 0.11 0.87 5.59 -5.19 -0.03 0.84 16 20 N -0.37 -4.00 3.41 -63.81 -0.22 -4.22 16 21 C 0.25 2.24 12.63 -90.65 -1.14 1.09 16 22 N -0.55 -6.42 11.19 -15.83 -0.18 -6.60 16 23 C 0.19 2.32 13.03 -91.81 -1.20 1.13 16 24 N -0.28 -4.00 11.80 29.29 0.35 -3.66 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.07 0.27 6.44 -51.93 -0.33 -0.06 16 28 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.09 1.17 7.42 -51.93 -0.39 0.78 16 30 H 0.37 7.00 8.45 45.56 0.38 7.39 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.39 11.00 7.67 -40.82 -0.31 10.69 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.12 0.76 7.40 -51.93 -0.38 0.37 16 36 H 0.13 0.35 8.05 -51.93 -0.42 -0.06 16 37 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.22 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -39.77 329.81 -7.39 -47.16 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.37 Total: 11.09 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -2.21 Total: 7.26 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -0.17 Total: -68.90 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.58 Total: -19.40 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -39.77 -7.39 -47.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677133073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.538 kcal (2) G-P(sol) polarization free energy of solvation -39.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds