Wall clock time and date at job start Fri Apr 10 2020 17:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00077 * 2 1 4 4 C 1.53001 * 109.47186 * 270.00565 * 3 2 1 5 5 H 1.09005 * 109.47362 * 59.99846 * 4 3 2 6 6 O 1.42905 * 109.47113 * 299.99876 * 4 3 2 7 7 C 1.52999 * 109.47246 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47171 * 184.99980 * 7 4 3 9 9 C 1.36938 * 119.99927 * 180.02562 * 8 7 4 10 10 H 1.08004 * 119.99774 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00033 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00158 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00311 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46601 * 59.99948 * 13 11 9 15 15 H 1.48496 * 109.47363 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46805 * 300.00255 * 13 11 9 17 17 C 1.34773 * 120.00201 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00442 * 179.97438 * 17 2 1 19 19 C 1.50705 * 119.99762 * 359.97438 * 17 2 1 20 20 N 1.46500 * 109.47081 * 180.02562 * 19 17 2 21 21 C 1.34429 * 126.81895 * 124.99841 * 20 19 17 22 22 N 1.30837 * 108.07952 * 180.02562 * 21 20 19 23 23 C 1.33246 * 109.82318 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94935 * 0.27015 * 23 22 21 25 25 H 1.09004 * 109.46493 * 269.99739 * 1 2 3 26 26 H 1.08996 * 109.47228 * 29.99514 * 1 2 3 27 27 H 1.08998 * 109.47136 * 149.99971 * 1 2 3 28 28 H 1.09004 * 109.47012 * 30.00182 * 3 2 1 29 29 H 1.08993 * 109.47244 * 150.00662 * 3 2 1 30 30 H 0.96707 * 113.99738 * 300.00314 * 6 4 3 31 31 H 1.09002 * 109.47073 * 304.99486 * 7 4 3 32 32 H 1.08999 * 109.47168 * 64.99873 * 7 4 3 33 33 H 0.96995 * 120.00025 * 359.97438 * 8 7 4 34 34 H 0.97003 * 120.00578 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.47196 * 60.00345 * 19 17 2 36 36 H 1.08995 * 109.47509 * 300.00521 * 19 17 2 37 37 H 1.08000 * 125.96340 * 359.97438 * 21 20 19 38 38 H 1.08002 * 125.52127 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1163 7 6 3.2169 3.0358 -1.4425 8 7 3.3567 3.5189 -2.8185 9 6 4.0109 4.6958 -3.0678 10 1 4.4235 5.2680 -2.2500 11 6 4.1438 5.1533 -4.3716 12 7 3.6415 4.4557 -5.3683 13 14 5.0357 6.7590 -4.7117 14 1 6.4340 6.6620 -4.2212 15 1 5.0415 7.0222 -6.1731 16 1 4.3412 7.8689 -4.0110 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3374 -3.5858 -0.0005 21 6 2.3918 -4.5992 0.8810 22 7 3.3805 -5.3840 0.5370 23 6 3.9775 -4.9067 -0.5544 24 7 3.3779 -3.8037 -0.9183 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5137 30 1 4.0873 0.5461 -1.7127 31 1 2.6691 3.7712 -0.8532 32 1 4.2052 2.8852 -1.0081 33 1 2.9864 3.0048 -3.5530 34 1 3.7346 4.7752 -6.2794 35 1 0.7584 -2.5299 -0.8903 36 1 0.7590 -2.5302 0.8896 37 1 1.7345 -4.7405 1.7263 38 1 4.8231 -5.3557 -1.0543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677133073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:33 Heat of formation + Delta-G solvation = 5.412554 kcal Electronic energy + Delta-G solvation = -22174.094783 eV Core-core repulsion = 18667.696025 eV Total energy + Delta-G solvation = -3506.398758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.97298 -40.97574 -38.71620 -36.44252 -35.89195 -34.95778 -33.24488 -32.13941 -31.23849 -29.09964 -27.92664 -26.57879 -24.62540 -23.15106 -22.85742 -22.56582 -20.41729 -19.26368 -18.56913 -18.15580 -17.71767 -17.10402 -16.55222 -16.52802 -16.38074 -16.08954 -15.57177 -15.40999 -14.96629 -14.85337 -14.43727 -14.19525 -13.98925 -13.68431 -13.54761 -13.21685 -12.98103 -12.77045 -12.73575 -12.62394 -12.23316 -12.06394 -11.84698 -11.29209 -11.12837 -10.99145 -10.97640 -10.74859 -10.44627 -9.57081 -9.05023 -7.97450 -5.27999 0.72650 1.33895 1.44188 1.48542 1.54464 1.55747 2.01424 2.08856 2.53411 3.29794 3.35132 3.51648 3.55289 3.67769 3.76693 4.03124 4.06300 4.09592 4.18627 4.33485 4.41766 4.47413 4.50460 4.68084 4.82123 4.87954 4.99577 5.20511 5.26993 5.41001 5.45080 5.50703 5.91911 6.22983 6.35403 6.73465 7.12789 7.17665 7.29226 8.05144 8.28041 9.25780 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.003225 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.731566 B = 8678.872283 C = 9242.183551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.605 5.605 3 C 0.099 3.901 4 C 0.094 3.906 5 H 0.092 0.908 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.252 4.252 10 H 0.077 0.923 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.979 3.021 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.272 1.272 17 C 0.495 3.505 18 O -0.561 6.561 19 C 0.114 3.886 20 N -0.377 5.377 21 C 0.264 3.736 22 N -0.577 5.577 23 C 0.181 3.819 24 N -0.337 5.337 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.373 0.627 31 H 0.043 0.957 32 H 0.016 0.984 33 H 0.373 0.627 34 H 0.252 0.748 35 H 0.133 0.867 36 H 0.186 0.814 37 H 0.271 0.729 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 -16.117 18.207 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.338 5.338 3 C -0.026 4.026 4 C 0.034 3.966 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.383 4.383 10 H 0.095 0.905 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.198 1.198 17 C 0.282 3.718 18 O -0.439 6.439 19 C -0.011 4.011 20 N -0.168 5.168 21 C -0.032 4.032 22 N -0.304 5.304 23 C -0.121 4.121 24 N -0.164 5.164 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.220 0.780 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.205 0.795 34 H 0.060 0.940 35 H 0.151 0.849 36 H 0.203 0.797 37 H 0.287 0.713 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.209 -15.774 17.429 26.489 hybrid contribution 1.021 0.993 -0.557 1.529 sum -11.188 -14.781 16.872 25.066 Atomic orbital electron populations 1.22262 0.76286 1.05043 1.04326 1.47758 1.08667 1.04559 1.72845 1.22003 0.98835 0.86183 0.95538 1.22457 0.94372 0.86185 0.93581 0.89014 1.86529 1.33338 1.59420 1.57871 1.21454 0.97346 0.94734 0.86869 1.42469 1.67881 1.24694 1.03391 1.19641 1.27611 0.98526 0.92553 0.90480 1.25667 1.02979 1.02831 0.95508 1.69849 1.52211 1.41247 0.98758 0.85142 0.78468 0.79363 0.76354 1.20549 1.22075 1.19805 1.21051 0.88113 0.86439 0.76233 1.90750 1.15861 1.87350 1.49898 1.22013 0.88917 0.80388 1.09761 1.50175 1.24519 1.20764 1.21344 1.27064 0.96436 0.83967 0.95739 1.70520 1.11224 1.32582 1.16121 1.26440 1.00913 0.91096 0.93699 1.78218 1.02752 1.19271 1.16156 0.88895 0.90516 0.88875 0.86293 0.90939 0.77962 0.93901 0.96585 0.79485 0.93965 0.84894 0.79701 0.71324 0.75367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.24 127.77 1.31 1.78 16 2 N -0.61 -10.90 2.83 -846.76 -2.39 -13.30 16 3 C 0.10 2.26 5.15 86.38 0.44 2.70 16 4 C 0.09 3.09 3.27 30.59 0.10 3.19 16 5 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 6 O -0.57 -22.46 12.09 -140.57 -1.70 -24.16 16 7 C 0.12 4.94 5.90 86.38 0.51 5.45 16 8 N -0.74 -39.55 5.55 -343.44 -1.91 -41.46 16 9 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 11 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 12 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 13 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.49 10.98 7.22 87.66 0.63 11.62 16 18 O -0.56 -18.77 14.09 5.38 0.08 -18.69 16 19 C 0.11 1.38 5.59 85.63 0.48 1.86 16 20 N -0.38 -7.48 3.41 -355.80 -1.21 -8.69 16 21 C 0.26 4.03 12.63 180.36 2.28 6.31 16 22 N -0.58 -13.02 11.19 -203.99 -2.28 -15.30 16 23 C 0.18 4.54 13.03 180.76 2.36 6.90 16 24 N -0.34 -9.80 11.80 -61.24 -0.72 -10.52 16 25 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 26 H 0.08 0.68 8.07 -2.39 -0.02 0.67 16 27 H 0.09 0.30 6.44 -2.39 -0.02 0.28 16 28 H 0.12 1.98 8.07 -2.38 -0.02 1.96 16 29 H 0.07 1.91 7.42 -2.39 -0.02 1.89 16 30 H 0.37 14.75 8.45 -74.05 -0.63 14.12 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.37 21.78 7.67 -92.71 -0.71 21.07 16 34 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.13 1.25 7.40 -2.39 -0.02 1.23 16 36 H 0.19 -0.05 8.05 -2.39 -0.02 -0.07 16 37 H 0.27 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.23 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -91.12 329.81 1.34 -89.78 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.24 Total: 32.73 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 9.41 Total: 21.93 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -8.24 Total: -150.85 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.62 Total: -42.85 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -91.12 1.34 -89.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677133073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.193 kcal (2) G-P(sol) polarization free energy of solvation -91.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds