Wall clock time and date at job start Fri Apr 10 2020 17:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99404 * 2 1 4 4 H 1.48505 * 109.46640 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47329 * 299.99927 * 3 2 1 6 6 H 1.48495 * 109.47256 * 60.00205 * 3 2 1 7 7 C 1.38807 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00038 * 163.06550 * 7 2 1 9 9 N 1.36943 * 120.00168 * 343.05234 * 7 2 1 10 10 C 1.46929 * 120.62986 * 331.84847 * 9 7 2 11 11 C 1.53184 * 108.77346 * 233.62930 * 10 9 7 12 12 C 1.53042 * 109.31424 * 305.36397 * 11 10 9 13 13 N 1.46497 * 109.46052 * 181.38697 * 12 11 10 14 14 C 1.34777 * 119.99972 * 154.99900 * 13 12 11 15 15 O 1.21587 * 119.99729 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00144 * 179.97438 * 14 13 12 17 17 C 1.47581 * 134.49074 * 179.97438 * 16 14 13 18 18 C 1.53945 * 86.11812 * 204.64135 * 17 16 14 19 19 C 1.52997 * 113.74832 * 221.94304 * 18 17 16 20 20 O 1.42894 * 109.47693 * 183.07641 * 19 18 17 21 21 C 1.47926 * 134.50467 * 0.02562 * 16 14 13 22 22 C 1.53045 * 109.53763 * 61.36867 * 12 11 10 23 23 C 1.46921 * 120.62840 * 151.87159 * 9 7 2 24 24 H 0.97000 * 120.00794 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.58251 * 113.83813 * 10 9 7 26 26 H 1.09002 * 109.70061 * 353.48634 * 10 9 7 27 27 H 1.09002 * 109.50092 * 185.41346 * 11 10 9 28 28 H 1.08999 * 109.50408 * 65.32049 * 11 10 9 29 29 H 1.09001 * 109.46141 * 301.36188 * 12 11 10 30 30 H 0.96993 * 120.00305 * 335.00196 * 13 12 11 31 31 H 1.09003 * 113.77062 * 90.34536 * 17 16 14 32 32 H 1.08994 * 113.77470 * 318.94483 * 17 16 14 33 33 H 1.09003 * 113.74184 * 90.73546 * 18 17 16 34 34 H 1.09005 * 109.46772 * 303.07596 * 19 18 17 35 35 H 1.09002 * 109.46996 * 63.06979 * 19 18 17 36 36 H 0.96695 * 114.00523 * 179.97438 * 20 19 18 37 37 H 1.09005 * 113.86949 * 41.08906 * 21 16 14 38 38 H 1.09001 * 113.76700 * 269.60325 * 21 16 14 39 39 H 1.09001 * 109.49628 * 58.58714 * 22 12 11 40 40 H 1.08999 * 109.49492 * 178.68695 * 22 12 11 41 41 H 1.09000 * 109.58135 * 246.16029 * 23 9 7 42 42 H 1.09006 * 109.58898 * 6.43661 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2730 9 7 1.3702 -2.3625 0.3446 10 6 0.2264 -2.3408 1.2667 11 6 0.4987 -3.3197 2.4130 12 6 0.8137 -4.7013 1.8348 13 7 1.0421 -5.6479 2.9292 14 6 0.8393 -6.9659 2.7336 15 8 0.4672 -7.3692 1.6486 16 7 1.0499 -7.8369 3.7403 17 6 0.9332 -9.3012 3.8824 18 6 0.7463 -9.0352 5.3871 19 6 1.5058 -10.0140 6.2848 20 8 1.2127 -9.7302 7.6543 21 6 1.4900 -7.7093 5.1468 22 6 2.0689 -4.6172 0.9631 23 6 1.8145 -3.6528 -0.1996 24 1 -0.4851 0.8400 0.0004 25 1 -0.6766 -2.6417 0.7357 26 1 0.0967 -1.3355 1.6677 27 1 -0.3817 -3.3852 3.0525 28 1 1.3483 -2.9678 2.9981 29 1 -0.0264 -5.0418 1.2295 30 1 1.3393 -5.3262 3.7947 31 1 1.8495 -9.8404 3.6421 32 1 0.0517 -9.7208 3.3977 33 1 -0.2946 -8.9063 5.6841 34 1 1.1993 -11.0337 6.0515 35 1 2.5770 -9.9083 6.1130 36 1 1.6609 -10.3137 8.2816 37 1 1.0527 -6.8592 5.6704 38 1 2.5698 -7.7813 5.2775 39 1 2.9038 -4.2530 1.5618 40 1 2.3060 -5.6060 0.5705 41 1 1.0409 -4.0608 -0.8502 42 1 2.7336 -3.5125 -0.7686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678700965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:37 Heat of formation + Delta-G solvation = -21.766159 kcal Electronic energy + Delta-G solvation = -22577.076710 eV Core-core repulsion = 19173.039738 eV Total energy + Delta-G solvation = -3404.036972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54379 -38.75042 -37.23225 -36.53965 -34.30344 -32.18962 -30.78849 -29.96047 -29.12918 -26.48666 -26.07453 -24.61619 -22.23434 -21.88584 -20.86887 -19.70524 -19.19746 -17.90464 -17.72870 -16.68024 -16.48066 -16.07950 -15.30617 -14.86125 -14.41732 -14.38674 -13.77722 -13.51809 -13.50507 -13.22706 -12.94649 -12.90454 -12.71256 -12.31228 -12.26870 -11.48184 -11.41969 -11.23918 -11.10039 -10.81184 -10.71406 -10.45659 -10.41530 -10.23288 -10.00366 -9.93237 -9.71425 -9.49708 -8.91660 -8.52090 -8.38732 -6.65920 -5.77493 -3.19626 2.46804 3.34853 3.38025 3.45950 3.48339 3.60733 3.97560 4.12234 4.51224 4.60390 4.79054 4.86461 5.02889 5.08585 5.20945 5.22942 5.30752 5.37244 5.44873 5.53389 5.58690 5.65909 5.87762 5.94203 6.12346 6.32846 6.40385 6.56130 6.62615 6.65013 6.83955 7.01141 7.02831 7.16329 7.28204 7.35363 7.64851 7.81578 8.15429 8.46761 8.79259 9.22882 9.86204 10.43542 11.31484 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.003067 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.866546 B = 9125.852389 C = 9439.431381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.168 3.832 13 N -0.736 5.736 14 C 0.727 3.273 15 O -0.589 6.589 16 N -0.669 5.669 17 C 0.138 3.862 18 C -0.123 4.123 19 C 0.085 3.915 20 O -0.572 6.572 21 C 0.109 3.891 22 C -0.139 4.139 23 C 0.148 3.852 24 H 0.253 0.747 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.381 0.619 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -19.122 14.928 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.388 5.388 14 C 0.430 3.570 15 O -0.467 6.467 16 N -0.411 5.411 17 C 0.014 3.986 18 C -0.142 4.142 19 C 0.006 3.994 20 O -0.378 6.378 21 C -0.014 4.014 22 C -0.179 4.179 23 C 0.021 3.979 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.223 0.777 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.751 -18.614 13.606 23.220 hybrid contribution 0.993 0.561 0.695 1.336 sum 3.744 -18.053 14.301 23.334 Atomic orbital electron populations 1.70035 1.05246 1.25395 1.54111 1.25058 0.95299 0.98426 1.00975 0.86224 0.79350 0.83960 0.77252 1.20281 1.21737 1.21591 1.19237 0.92597 0.84746 1.41429 0.91617 1.44108 1.35832 1.01680 1.49976 1.20735 0.88918 0.97855 0.87646 1.22544 1.00476 0.94715 1.00840 1.20933 0.98359 0.87504 0.86732 1.45495 1.72560 1.04684 1.16084 1.15506 0.78316 0.80893 0.82327 1.90921 1.54318 1.77918 1.23503 1.49121 1.72463 1.07653 1.11824 1.22883 1.02136 0.81340 0.92257 1.23160 1.01683 0.95331 0.93995 1.22115 0.98065 0.97543 0.81629 1.86495 1.73699 1.61463 1.16121 1.23254 0.99286 0.98198 0.80698 1.22392 0.97245 0.99469 0.98832 1.20876 0.97882 0.86494 0.92664 0.93665 0.96075 0.89022 0.92781 0.92257 0.90090 0.77697 0.90068 0.89746 0.87248 0.92929 0.93037 0.77218 0.90041 0.89939 0.92490 0.92761 0.96147 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.15 2.99 -172.32 -0.52 -15.67 16 10 C 0.18 4.20 5.30 -3.71 -0.02 4.19 16 11 C -0.15 -2.78 5.55 -26.61 -0.15 -2.93 16 12 C 0.17 3.14 2.41 -67.89 -0.16 2.97 16 13 N -0.74 -11.57 5.08 -58.63 -0.30 -11.87 16 14 C 0.73 12.17 8.73 -86.92 -0.76 11.41 16 15 O -0.59 -12.35 16.73 5.29 0.09 -12.27 16 16 N -0.67 -8.25 3.62 -183.83 -0.66 -8.92 16 17 C 0.14 1.24 8.40 -2.97 -0.02 1.21 16 18 C -0.12 -0.90 4.18 -89.71 -0.38 -1.27 16 19 C 0.08 0.44 6.89 37.16 0.26 0.70 16 20 O -0.57 -3.59 13.66 -35.23 -0.48 -4.07 16 21 C 0.11 0.92 8.02 -2.79 -0.02 0.90 16 22 C -0.14 -2.69 5.65 -26.61 -0.15 -2.84 16 23 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 30 H 0.39 5.13 8.22 -40.82 -0.34 4.80 16 31 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.05 0.22 7.88 -51.93 -0.41 -0.19 16 36 H 0.38 0.69 9.12 45.56 0.42 1.11 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -34.75 340.76 -8.86 -43.62 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.06 Total: 2.60 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.66 Total: 10.46 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.86 Total: -62.19 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.39 Total: -16.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.75 -8.86 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678700965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.849 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds