Wall clock time and date at job start Fri Apr 10 2020 17:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99404 * 2 1 4 4 H 1.48505 * 109.46640 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47329 * 299.99927 * 3 2 1 6 6 H 1.48495 * 109.47256 * 60.00205 * 3 2 1 7 7 C 1.38807 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00038 * 163.06550 * 7 2 1 9 9 N 1.36943 * 120.00168 * 343.05234 * 7 2 1 10 10 C 1.46929 * 120.62986 * 331.84847 * 9 7 2 11 11 C 1.53184 * 108.77346 * 233.62930 * 10 9 7 12 12 C 1.53042 * 109.31424 * 305.36397 * 11 10 9 13 13 N 1.46497 * 109.46052 * 181.38697 * 12 11 10 14 14 C 1.34777 * 119.99972 * 154.99900 * 13 12 11 15 15 O 1.21587 * 119.99729 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00144 * 179.97438 * 14 13 12 17 17 C 1.47581 * 134.49074 * 179.97438 * 16 14 13 18 18 C 1.53945 * 86.11812 * 204.64135 * 17 16 14 19 19 C 1.52997 * 113.74832 * 221.94304 * 18 17 16 20 20 O 1.42894 * 109.47693 * 183.07641 * 19 18 17 21 21 C 1.47926 * 134.50467 * 0.02562 * 16 14 13 22 22 C 1.53045 * 109.53763 * 61.36867 * 12 11 10 23 23 C 1.46921 * 120.62840 * 151.87159 * 9 7 2 24 24 H 0.97000 * 120.00794 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.58251 * 113.83813 * 10 9 7 26 26 H 1.09002 * 109.70061 * 353.48634 * 10 9 7 27 27 H 1.09002 * 109.50092 * 185.41346 * 11 10 9 28 28 H 1.08999 * 109.50408 * 65.32049 * 11 10 9 29 29 H 1.09001 * 109.46141 * 301.36188 * 12 11 10 30 30 H 0.96993 * 120.00305 * 335.00196 * 13 12 11 31 31 H 1.09003 * 113.77062 * 90.34536 * 17 16 14 32 32 H 1.08994 * 113.77470 * 318.94483 * 17 16 14 33 33 H 1.09003 * 113.74184 * 90.73546 * 18 17 16 34 34 H 1.09005 * 109.46772 * 303.07596 * 19 18 17 35 35 H 1.09002 * 109.46996 * 63.06979 * 19 18 17 36 36 H 0.96695 * 114.00523 * 179.97438 * 20 19 18 37 37 H 1.09005 * 113.86949 * 41.08906 * 21 16 14 38 38 H 1.09001 * 113.76700 * 269.60325 * 21 16 14 39 39 H 1.09001 * 109.49628 * 58.58714 * 22 12 11 40 40 H 1.08999 * 109.49492 * 178.68695 * 22 12 11 41 41 H 1.09000 * 109.58135 * 246.16029 * 23 9 7 42 42 H 1.09006 * 109.58898 * 6.43661 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2730 9 7 1.3702 -2.3625 0.3446 10 6 0.2264 -2.3408 1.2667 11 6 0.4987 -3.3197 2.4130 12 6 0.8137 -4.7013 1.8348 13 7 1.0421 -5.6479 2.9292 14 6 0.8393 -6.9659 2.7336 15 8 0.4672 -7.3692 1.6486 16 7 1.0499 -7.8369 3.7403 17 6 0.9332 -9.3012 3.8824 18 6 0.7463 -9.0352 5.3871 19 6 1.5058 -10.0140 6.2848 20 8 1.2127 -9.7302 7.6543 21 6 1.4900 -7.7093 5.1468 22 6 2.0689 -4.6172 0.9631 23 6 1.8145 -3.6528 -0.1996 24 1 -0.4851 0.8400 0.0004 25 1 -0.6766 -2.6417 0.7357 26 1 0.0967 -1.3355 1.6677 27 1 -0.3817 -3.3852 3.0525 28 1 1.3483 -2.9678 2.9981 29 1 -0.0264 -5.0418 1.2295 30 1 1.3393 -5.3262 3.7947 31 1 1.8495 -9.8404 3.6421 32 1 0.0517 -9.7208 3.3977 33 1 -0.2946 -8.9063 5.6841 34 1 1.1993 -11.0337 6.0515 35 1 2.5770 -9.9083 6.1130 36 1 1.6609 -10.3137 8.2816 37 1 1.0527 -6.8592 5.6704 38 1 2.5698 -7.7813 5.2775 39 1 2.9038 -4.2530 1.5618 40 1 2.3060 -5.6060 0.5705 41 1 1.0409 -4.0608 -0.8502 42 1 2.7336 -3.5125 -0.7686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678700965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:37 Heat of formation + Delta-G solvation = -48.566998 kcal Electronic energy + Delta-G solvation = -22578.238881 eV Core-core repulsion = 19173.039738 eV Total energy + Delta-G solvation = -3405.199144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55300 -39.94648 -38.68614 -37.14675 -35.97278 -33.96968 -32.13432 -31.57952 -30.59922 -27.32687 -27.11910 -26.14708 -23.96873 -23.54942 -21.77188 -21.12563 -20.48909 -19.12284 -18.50641 -18.15726 -17.53966 -17.07600 -16.80063 -16.18002 -15.87102 -15.40499 -15.30242 -15.29407 -14.79472 -14.57774 -14.29798 -14.00164 -13.74300 -13.55181 -13.26364 -13.14956 -13.02821 -12.63558 -12.53378 -12.24191 -12.08771 -12.00295 -11.88977 -11.83908 -11.58174 -11.39397 -11.16837 -10.75303 -10.57716 -10.20210 -9.54417 -8.72541 -7.88515 -5.34675 1.42921 1.48249 1.49318 1.60473 2.11830 2.51577 2.85029 3.12105 3.27840 3.59892 3.64169 3.85693 3.97833 4.05113 4.29242 4.30626 4.38810 4.41346 4.44317 4.54991 4.56588 4.62605 4.69741 4.72332 4.78841 4.84739 4.85584 5.02150 5.04440 5.12927 5.26929 5.29160 5.44433 5.57206 5.63610 5.68841 6.21263 6.38123 6.98884 7.00330 7.13249 7.55815 7.82262 8.35965 9.19015 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.003067 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.866546 B = 9125.852389 C = 9439.431381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.180 3.820 13 N -0.725 5.725 14 C 0.719 3.281 15 O -0.640 6.640 16 N -0.674 5.674 17 C 0.132 3.868 18 C -0.109 4.109 19 C 0.089 3.911 20 O -0.595 6.595 21 C 0.108 3.892 22 C -0.122 4.122 23 C 0.145 3.855 24 H 0.251 0.749 25 H -0.006 1.006 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.406 0.594 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -20.186 17.175 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.166 4.166 12 C 0.075 3.925 13 N -0.379 5.379 14 C 0.422 3.578 15 O -0.522 6.522 16 N -0.414 5.414 17 C 0.009 3.991 18 C -0.129 4.129 19 C 0.011 3.989 20 O -0.404 6.404 21 C -0.014 4.014 22 C -0.162 4.162 23 C 0.019 3.981 24 H 0.060 0.940 25 H 0.012 0.988 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.560 -19.737 15.941 25.777 hybrid contribution 0.421 0.789 0.014 0.894 sum 4.981 -18.948 15.955 25.266 Atomic orbital electron populations 1.70193 1.06746 1.25944 1.55343 1.25846 0.96071 1.01621 1.01055 0.85160 0.78593 0.79578 0.76801 1.19026 1.22098 1.21361 1.19561 0.92902 0.85764 1.41095 0.91409 1.44360 1.35953 1.02220 1.50721 1.20549 0.87738 0.97681 0.88658 1.22256 1.01865 0.93522 0.99001 1.20525 0.97009 0.87720 0.87238 1.45101 1.72607 1.04244 1.15921 1.15696 0.78191 0.81294 0.82580 1.90881 1.56571 1.78774 1.25987 1.49286 1.71173 1.08665 1.12260 1.23170 1.02937 0.79579 0.93404 1.22983 1.01379 0.95243 0.93255 1.22080 0.98521 0.97371 0.80917 1.86432 1.74485 1.62583 1.16859 1.23572 1.00777 0.99075 0.77956 1.22174 0.97793 0.98480 0.97793 1.20957 0.97412 0.85927 0.93780 0.93978 0.98781 0.91667 0.90706 0.91073 0.92845 0.75836 0.87832 0.90661 0.88315 0.91408 0.91385 0.75005 0.89581 0.87735 0.91532 0.92575 0.97558 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.88 11.19 21.65 0.24 -55.63 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.26 -14.67 9.58 84.03 0.81 -13.86 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 N -0.61 -31.56 2.99 -699.11 -2.09 -33.66 16 10 C 0.18 8.85 5.30 86.36 0.46 9.31 16 11 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 12 C 0.18 6.65 2.41 45.02 0.11 6.75 16 13 N -0.72 -21.79 5.08 -457.68 -2.33 -24.12 16 14 C 0.72 23.50 8.73 179.05 1.56 25.06 16 15 O -0.64 -27.14 16.73 -3.99 -0.07 -27.20 16 16 N -0.67 -15.41 3.62 -853.78 -3.09 -18.50 16 17 C 0.13 2.11 8.40 86.49 0.73 2.84 16 18 C -0.11 -1.32 4.18 -10.15 -0.04 -1.36 16 19 C 0.09 0.62 6.89 71.98 0.50 1.12 16 20 O -0.59 -5.66 13.66 -148.98 -2.03 -7.70 16 21 C 0.11 1.51 8.02 86.41 0.69 2.20 16 22 C -0.12 -4.65 5.65 30.67 0.17 -4.48 16 23 C 0.15 6.56 6.52 86.36 0.56 7.12 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.07 3.55 6.06 -2.39 -0.01 3.53 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 30 H 0.41 9.66 8.22 -92.71 -0.76 8.90 16 31 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.07 0.28 7.88 -2.39 -0.02 0.26 16 36 H 0.40 0.24 9.12 -74.06 -0.68 -0.43 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 1.07 7.92 -2.39 -0.02 1.05 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.06 2.60 7.93 -2.38 -0.02 2.58 16 Total: -1.00 -76.60 340.76 -1.62 -78.22 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.41 Total: 13.96 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 6.13 Total: 27.70 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -7.26 Total: -131.90 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.10 Total: -34.90 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.60 -1.62 -78.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678700965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.648 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds