Wall clock time and date at job start Fri Apr 10 2020 17:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.85447 * 23.52608 * 10 9 7 12 12 C 1.53782 * 113.61542 * 154.72232 * 10 9 7 13 13 C 1.53779 * 87.08025 * 139.97648 * 12 10 9 14 14 H 1.09005 * 113.61412 * 89.11972 * 13 12 10 15 15 N 1.46502 * 113.61564 * 219.93311 * 13 12 10 16 16 C 1.34773 * 120.00361 * 205.00313 * 15 13 12 17 17 O 1.21285 * 119.99775 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00590 * 180.02562 * 16 15 13 19 19 C 1.52991 * 109.47722 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47476 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47249 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.46984 * 180.02562 * 21 20 19 23 23 N 1.34776 * 119.99675 * 180.02562 * 22 21 20 24 24 O 1.21274 * 120.00224 * 359.97438 * 22 21 20 25 25 C 1.53777 * 87.08273 * 334.57004 * 13 12 10 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08997 * 113.61719 * 254.52880 * 12 10 9 29 29 H 1.09000 * 113.61236 * 25.34621 * 12 10 9 30 30 H 0.97000 * 119.99726 * 25.00610 * 15 13 12 31 31 H 1.09001 * 109.46965 * 300.00695 * 18 16 15 32 32 H 1.09003 * 109.46887 * 59.99761 * 18 16 15 33 33 H 1.09004 * 109.46873 * 300.00383 * 19 18 16 34 34 H 1.09003 * 109.47236 * 59.99850 * 19 18 16 35 35 H 1.08994 * 109.46749 * 300.00100 * 20 19 18 36 36 H 1.08998 * 109.46820 * 60.00035 * 20 19 18 37 37 H 1.09004 * 109.47286 * 300.00396 * 21 20 19 38 38 H 1.09003 * 109.47050 * 60.00003 * 21 20 19 39 39 H 0.97000 * 120.00316 * 0.02562 * 23 22 21 40 40 H 0.97004 * 120.00063 * 179.97438 * 23 22 21 41 41 H 1.09001 * 113.61338 * 270.87786 * 25 13 12 42 42 H 1.09000 * 113.61355 * 139.98049 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5263 -3.2957 -0.4124 12 6 5.5237 -2.3640 -0.6073 13 6 5.9865 -3.3108 0.5126 14 1 5.9137 -4.3663 0.2500 15 7 7.2888 -2.9548 1.0815 16 6 8.0481 -3.8998 1.6703 17 8 7.6535 -5.0452 1.7288 18 6 9.3874 -3.5335 2.2559 19 6 10.0393 -4.7800 2.8575 20 6 11.3988 -4.4079 3.4527 21 6 12.0503 -5.6544 4.0549 22 6 13.3891 -5.2877 4.6416 23 7 14.1485 -6.2329 5.2301 24 8 13.7835 -4.1424 4.5834 25 6 4.7921 -2.7965 1.3335 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 5.6074 -2.7943 -1.6052 29 1 5.9522 -1.3640 -0.5402 30 1 7.6045 -2.0388 1.0344 31 1 10.0289 -3.1309 1.4720 32 1 9.2505 -2.7830 3.0344 33 1 9.3979 -5.1830 3.6414 34 1 10.1762 -5.5303 2.0787 35 1 12.0403 -4.0047 2.6691 36 1 11.2614 -3.6579 4.2316 37 1 11.4086 -6.0573 4.8385 38 1 12.1877 -6.4048 3.2762 39 1 13.8336 -7.1492 5.2757 40 1 15.0105 -5.9970 5.6075 41 1 5.0212 -1.9152 1.9325 42 1 4.2852 -3.5760 1.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690361963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:41 Heat of formation + Delta-G solvation = -66.930959 kcal Electronic energy + Delta-G solvation = -21119.061265 eV Core-core repulsion = 17713.065800 eV Total energy + Delta-G solvation = -3405.995465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05565 -39.81496 -38.16561 -35.40809 -34.17614 -34.10236 -32.74511 -31.06682 -30.33243 -26.21925 -25.23955 -24.32559 -22.36319 -21.33516 -20.72124 -20.33582 -19.46771 -17.76892 -17.49866 -17.12299 -16.71359 -16.49059 -16.23031 -15.51117 -14.80127 -14.49007 -14.31237 -14.22834 -13.98306 -13.29686 -12.99240 -12.79477 -12.69818 -12.24730 -12.05969 -11.90160 -11.77269 -11.63599 -11.45917 -11.03841 -10.88032 -10.80082 -10.49648 -10.38492 -10.30428 -10.15390 -10.11874 -9.71417 -9.57714 -8.95964 -8.80404 -7.30191 -5.80586 -3.16651 2.22459 2.66740 3.04893 3.29631 3.33950 3.36301 3.42578 4.36925 4.47355 4.55109 4.60403 4.66107 4.90351 4.95092 5.05629 5.11619 5.16083 5.22943 5.39078 5.40482 5.43478 5.46582 5.62680 5.68651 5.75919 5.95390 6.02631 6.09746 6.10406 6.18496 6.30460 6.39101 6.52717 6.64809 6.85088 6.94132 7.58886 7.82191 7.95705 8.27811 8.38871 9.16198 9.88545 10.07976 11.37534 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.002196 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.752944 B =12750.178389 C =13128.852607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.735 5.735 10 C 0.174 3.826 11 H 0.088 0.912 12 C -0.162 4.162 13 C 0.118 3.882 14 H 0.111 0.889 15 N -0.717 5.717 16 C 0.510 3.490 17 O -0.547 6.547 18 C -0.142 4.142 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.143 4.143 22 C 0.515 3.485 23 N -0.860 5.860 24 O -0.544 6.544 25 C -0.176 4.176 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.399 0.601 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.400 0.600 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.513 -11.975 7.285 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.106 0.894 12 C -0.202 4.202 13 C 0.013 3.987 14 H 0.129 0.871 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.424 6.424 18 C -0.182 4.182 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.183 4.183 22 C 0.300 3.700 23 N -0.424 5.424 24 O -0.421 6.421 25 C -0.218 4.218 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.230 0.770 40 H 0.230 0.770 41 H 0.096 0.904 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 27.010 -12.050 7.172 30.433 hybrid contribution 0.940 1.340 0.277 1.660 sum 27.950 -10.711 7.449 30.845 Atomic orbital electron populations 1.69700 1.05118 1.25885 1.57199 1.24699 0.95267 0.97264 1.01868 0.86542 0.79159 0.84970 0.77759 1.21037 1.21694 1.20401 1.19152 0.80614 0.94857 1.43299 0.89029 1.42704 1.04101 1.01811 1.88801 1.21340 0.89318 0.90301 0.92810 0.89371 1.23885 0.99254 0.99143 0.97939 1.22457 0.81049 0.99903 0.95303 0.87142 1.46092 1.19884 1.11849 1.58898 1.20725 0.86355 0.85460 0.77801 1.90684 1.73636 1.20025 1.58083 1.21682 0.94191 1.00472 1.01883 1.21339 0.95153 0.96727 1.00953 1.21379 0.95749 0.96319 1.00970 1.21697 0.93544 1.00987 1.02033 1.20861 0.86908 0.85104 0.77110 1.43953 1.23468 1.12598 1.62350 1.90757 1.73485 1.20020 1.57806 1.24290 0.96345 1.00885 1.00285 0.93001 0.80489 0.91184 0.90227 0.76706 0.88943 0.88862 0.91033 0.91091 0.91095 0.91055 0.88574 0.88604 0.77003 0.76998 0.90361 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 21.79 27.74 -169.99 -4.71 17.08 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.73 -16.95 5.21 -52.64 -0.27 -17.23 16 10 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 11 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 12 C -0.16 -2.36 7.58 -25.92 -0.20 -2.56 16 13 C 0.12 1.67 4.24 -67.12 -0.28 1.38 16 14 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 15 N -0.72 -8.47 5.36 -53.02 -0.28 -8.76 16 16 C 0.51 6.28 7.83 -10.99 -0.09 6.19 16 17 O -0.55 -8.82 15.58 5.55 0.09 -8.73 16 18 C -0.14 -1.19 5.70 -27.89 -0.16 -1.35 16 19 C -0.10 -0.84 4.50 -26.73 -0.12 -0.96 16 20 C -0.11 -0.76 4.50 -26.73 -0.12 -0.88 16 21 C -0.14 -0.77 5.70 -27.88 -0.16 -0.93 16 22 C 0.51 3.80 8.10 -10.99 -0.09 3.71 16 23 N -0.86 -3.17 8.87 31.22 0.28 -2.89 16 24 O -0.54 -6.56 16.82 5.56 0.09 -6.47 16 25 C -0.18 -2.94 7.68 -25.92 -0.20 -3.13 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.36 8.14 5.78 -40.82 -0.24 7.90 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.40 3.74 8.73 -40.82 -0.36 3.38 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.40 0.28 8.83 -40.82 -0.36 -0.09 16 40 H 0.40 1.26 8.93 -40.82 -0.36 0.90 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -36.45 352.23 -7.48 -43.93 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.78 Total: 8.73 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.97 Total: -2.65 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.49 Total: -57.19 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.18 Total: -15.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.45 -7.48 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690361963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.004 kcal (2) G-P(sol) polarization free energy of solvation -36.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds