Wall clock time and date at job start Fri Apr 10 2020 17:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.85447 * 23.52608 * 10 9 7 12 12 C 1.53782 * 113.61542 * 154.72232 * 10 9 7 13 13 C 1.53779 * 87.08025 * 139.97648 * 12 10 9 14 14 H 1.09005 * 113.61412 * 89.11972 * 13 12 10 15 15 N 1.46502 * 113.61564 * 219.93311 * 13 12 10 16 16 C 1.34773 * 120.00361 * 205.00313 * 15 13 12 17 17 O 1.21285 * 119.99775 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00590 * 180.02562 * 16 15 13 19 19 C 1.52991 * 109.47722 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47476 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47249 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.46984 * 180.02562 * 21 20 19 23 23 N 1.34776 * 119.99675 * 180.02562 * 22 21 20 24 24 O 1.21274 * 120.00224 * 359.97438 * 22 21 20 25 25 C 1.53777 * 87.08273 * 334.57004 * 13 12 10 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08997 * 113.61719 * 254.52880 * 12 10 9 29 29 H 1.09000 * 113.61236 * 25.34621 * 12 10 9 30 30 H 0.97000 * 119.99726 * 25.00610 * 15 13 12 31 31 H 1.09001 * 109.46965 * 300.00695 * 18 16 15 32 32 H 1.09003 * 109.46887 * 59.99761 * 18 16 15 33 33 H 1.09004 * 109.46873 * 300.00383 * 19 18 16 34 34 H 1.09003 * 109.47236 * 59.99850 * 19 18 16 35 35 H 1.08994 * 109.46749 * 300.00100 * 20 19 18 36 36 H 1.08998 * 109.46820 * 60.00035 * 20 19 18 37 37 H 1.09004 * 109.47286 * 300.00396 * 21 20 19 38 38 H 1.09003 * 109.47050 * 60.00003 * 21 20 19 39 39 H 0.97000 * 120.00316 * 0.02562 * 23 22 21 40 40 H 0.97004 * 120.00063 * 179.97438 * 23 22 21 41 41 H 1.09001 * 113.61338 * 270.87786 * 25 13 12 42 42 H 1.09000 * 113.61355 * 139.98049 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5263 -3.2957 -0.4124 12 6 5.5237 -2.3640 -0.6073 13 6 5.9865 -3.3108 0.5126 14 1 5.9137 -4.3663 0.2500 15 7 7.2888 -2.9548 1.0815 16 6 8.0481 -3.8998 1.6703 17 8 7.6535 -5.0452 1.7288 18 6 9.3874 -3.5335 2.2559 19 6 10.0393 -4.7800 2.8575 20 6 11.3988 -4.4079 3.4527 21 6 12.0503 -5.6544 4.0549 22 6 13.3891 -5.2877 4.6416 23 7 14.1485 -6.2329 5.2301 24 8 13.7835 -4.1424 4.5834 25 6 4.7921 -2.7965 1.3335 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 5.6074 -2.7943 -1.6052 29 1 5.9522 -1.3640 -0.5402 30 1 7.6045 -2.0388 1.0344 31 1 10.0289 -3.1309 1.4720 32 1 9.2505 -2.7830 3.0344 33 1 9.3979 -5.1830 3.6414 34 1 10.1762 -5.5303 2.0787 35 1 12.0403 -4.0047 2.6691 36 1 11.2614 -3.6579 4.2316 37 1 11.4086 -6.0573 4.8385 38 1 12.1877 -6.4048 3.2762 39 1 13.8336 -7.1492 5.2757 40 1 15.0105 -5.9970 5.6075 41 1 5.0212 -1.9152 1.9325 42 1 4.2852 -3.5760 1.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690361963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:41 Heat of formation + Delta-G solvation = -96.650701 kcal Electronic energy + Delta-G solvation = -21120.350009 eV Core-core repulsion = 17713.065800 eV Total energy + Delta-G solvation = -3407.284210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08074 -40.45978 -39.42329 -36.11702 -35.77326 -34.59769 -34.23707 -32.52453 -31.44360 -27.10952 -26.54314 -25.89324 -23.64136 -22.30592 -21.39360 -21.21314 -20.86295 -19.43805 -18.18938 -17.91020 -17.51192 -17.43186 -17.08661 -16.43392 -16.26486 -15.93085 -15.47676 -15.03681 -14.85675 -14.69433 -14.60486 -13.89249 -13.60758 -13.41723 -13.38968 -13.30780 -12.88168 -12.56678 -12.29842 -12.20100 -12.09131 -12.02862 -11.91116 -11.72042 -11.64010 -11.47201 -11.00956 -10.92936 -10.71518 -10.60999 -9.94555 -9.27696 -8.02191 -5.36073 1.38289 1.43123 1.50173 1.69568 1.71156 2.28282 2.49214 2.71746 3.27552 3.63172 3.71357 3.82809 3.84644 3.92683 4.04960 4.08032 4.12886 4.26660 4.43254 4.52880 4.62713 4.76375 4.84156 4.85408 4.89664 4.89737 4.93065 5.10539 5.13877 5.15025 5.36234 5.36823 5.51047 5.68277 5.77646 5.93743 6.22356 6.51130 6.66360 7.07831 7.34817 7.39988 7.83696 8.03930 9.19292 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.002196 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.752944 B =12750.178389 C =13128.852607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.737 5.737 10 C 0.151 3.849 11 H 0.075 0.925 12 C -0.139 4.139 13 C 0.134 3.866 14 H 0.102 0.898 15 N -0.709 5.709 16 C 0.507 3.493 17 O -0.588 6.588 18 C -0.136 4.136 19 C -0.098 4.098 20 C -0.100 4.100 21 C -0.140 4.140 22 C 0.510 3.490 23 N -0.842 5.842 24 O -0.599 6.599 25 C -0.171 4.171 26 H 0.258 0.742 27 H 0.369 0.631 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.415 0.585 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.418 0.582 40 H 0.404 0.596 41 H 0.079 0.921 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.685 -11.622 7.413 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.172 1.172 7 C -0.368 4.368 8 H 0.073 0.927 9 N -0.379 5.379 10 C 0.041 3.959 11 H 0.093 0.907 12 C -0.179 4.179 13 C 0.028 3.972 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.296 3.704 17 O -0.469 6.469 18 C -0.176 4.176 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.179 4.179 22 C 0.297 3.703 23 N -0.406 5.406 24 O -0.480 6.480 25 C -0.213 4.213 26 H 0.066 0.934 27 H 0.203 0.797 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.252 0.748 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.250 0.750 40 H 0.235 0.765 41 H 0.097 0.903 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 30.267 -11.764 7.316 33.287 hybrid contribution -0.055 1.044 0.271 1.080 sum 30.212 -10.720 7.587 32.944 Atomic orbital electron populations 1.69899 1.07304 1.26727 1.59590 1.25585 0.96182 1.01549 1.02552 0.85342 0.78676 0.79147 0.78160 1.20242 1.22569 1.17198 1.19113 0.82891 0.93451 1.41394 0.92749 1.42635 1.02310 1.03710 1.89214 1.21649 0.90985 0.88296 0.94972 0.90711 1.23692 0.95345 1.00264 0.98565 1.22064 0.81482 0.99369 0.94246 0.87981 1.45971 1.18767 1.12804 1.58436 1.21422 0.87341 0.84725 0.76922 1.90673 1.74748 1.21844 1.59619 1.21734 0.91998 1.01001 1.02834 1.21266 0.95315 0.96516 1.00465 1.21274 0.95126 0.96926 1.00480 1.21715 0.92600 1.00631 1.02987 1.21210 0.87608 0.84686 0.76835 1.43831 1.23122 1.12965 1.60652 1.90734 1.74772 1.22242 1.60222 1.24163 0.97344 1.00614 0.99206 0.93374 0.79749 0.89690 0.88450 0.74847 0.86626 0.87201 0.92030 0.91573 0.91687 0.92016 0.86895 0.86653 0.75043 0.76537 0.90268 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 44.63 27.74 68.60 1.90 46.54 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 7 C -0.24 -13.48 10.45 84.03 0.88 -12.60 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.74 -33.30 5.21 -320.45 -1.67 -34.97 16 10 C 0.15 5.47 4.48 45.52 0.20 5.67 16 11 H 0.07 2.88 8.10 -2.39 -0.02 2.86 16 12 C -0.14 -3.65 7.58 31.12 0.24 -3.41 16 13 C 0.13 3.52 4.24 45.52 0.19 3.72 16 14 H 0.10 2.94 7.46 -2.38 -0.02 2.92 16 15 N -0.71 -14.67 5.36 -440.04 -2.36 -17.03 16 16 C 0.51 11.34 7.83 87.66 0.69 12.03 16 17 O -0.59 -18.27 15.58 -3.04 -0.05 -18.32 16 18 C -0.14 -1.89 5.70 29.84 0.17 -1.72 16 19 C -0.10 -1.38 4.50 30.59 0.14 -1.24 16 20 C -0.10 -1.26 4.50 30.60 0.14 -1.12 16 21 C -0.14 -1.22 5.70 29.85 0.17 -1.05 16 22 C 0.51 6.82 8.10 87.66 0.71 7.53 16 23 N -0.84 -4.62 8.87 -173.54 -1.54 -6.16 16 24 O -0.60 -14.19 16.82 -3.01 -0.05 -14.24 16 25 C -0.17 -5.53 7.68 31.12 0.24 -5.29 16 26 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 27 H 0.37 15.58 5.78 -92.71 -0.54 15.04 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 30 H 0.41 6.12 8.73 -92.71 -0.81 5.32 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.42 -0.47 8.83 -92.71 -0.82 -1.29 16 40 H 0.40 1.92 8.93 -92.71 -0.83 1.09 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.70 352.23 -1.22 -82.93 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -1.99 Total: 25.24 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.23 Total: -0.99 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -5.26 Total: -121.16 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.10 Total: -32.56 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.54 kcal Total: -81.70 -1.22 -82.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690361963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.723 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds