Wall clock time and date at job start Fri Apr 10 2020 17:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88298 * 57.42591 * 11 10 9 13 13 C 1.55158 * 111.00640 * 293.54603 * 11 10 9 14 14 C 1.54323 * 102.94316 * 206.42094 * 13 11 10 15 15 N 1.47028 * 107.26890 * 22.19439 * 14 13 11 16 16 C 1.34777 * 125.64376 * 181.01498 * 15 14 13 17 17 O 1.21284 * 119.99544 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00074 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.46828 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.47023 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47079 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99748 * 179.97438 * 21 20 19 23 23 O 1.21274 * 120.00174 * 0.02562 * 21 20 19 24 24 C 1.47422 * 108.70412 * 1.05708 * 15 14 13 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 28 28 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 29 29 H 1.09000 * 110.71519 * 324.78915 * 13 11 10 30 30 H 1.08998 * 110.71793 * 88.05386 * 13 11 10 31 31 H 1.08999 * 109.88234 * 141.60483 * 14 13 11 32 32 H 1.08993 * 109.88058 * 262.61958 * 14 13 11 33 33 H 1.09002 * 109.47362 * 299.99925 * 18 16 15 34 34 H 1.08997 * 109.47304 * 60.00017 * 18 16 15 35 35 H 1.09003 * 109.47316 * 299.99631 * 19 18 16 36 36 H 1.09000 * 109.47140 * 60.00320 * 19 18 16 37 37 H 1.09003 * 109.46844 * 300.00006 * 20 19 18 38 38 H 1.09000 * 109.46831 * 60.00218 * 20 19 18 39 39 H 0.96998 * 120.00189 * 0.02562 * 22 21 20 40 40 H 0.96997 * 119.99356 * 180.02562 * 22 21 20 41 41 H 1.08997 * 110.36669 * 217.03754 * 24 15 14 42 42 H 1.08994 * 110.36588 * 94.71497 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3948 -4.7585 -0.8607 13 6 0.2620 -4.8667 1.3253 14 6 -0.1208 -6.3569 1.4453 15 7 0.8345 -7.1201 0.6287 16 6 0.8275 -8.4566 0.4554 17 8 1.6683 -8.9819 -0.2432 18 6 -0.2251 -9.2983 1.1297 19 6 -0.0078 -10.7699 0.7716 20 6 -1.0761 -11.6246 1.4567 21 6 -0.8625 -13.0740 1.1034 22 7 -1.6895 -14.0168 1.5970 23 8 0.0541 -13.3921 0.3758 24 6 1.8018 -6.1813 0.0318 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6853 -3.7142 -0.8912 28 1 2.6841 -3.7150 0.8887 29 1 0.8868 -4.5602 2.1642 30 1 -0.6299 -4.2436 1.2594 31 1 -0.0547 -6.6739 2.4861 32 1 -1.1342 -6.5103 1.0748 33 1 -0.1532 -9.1733 2.2102 34 1 -1.2127 -8.9839 0.7925 35 1 -0.0795 -10.8953 -0.3089 36 1 0.9798 -11.0840 1.1092 37 1 -1.0040 -11.4991 2.5371 38 1 -2.0639 -11.3106 1.1195 39 1 -2.4224 -13.7625 2.1792 40 1 -1.5518 -14.9497 1.3698 41 1 2.0626 -6.4967 -0.9785 42 1 2.6958 -6.1128 0.6514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690760664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:42 Heat of formation + Delta-G solvation = -110.934775 kcal Electronic energy + Delta-G solvation = -21606.833697 eV Core-core repulsion = 18198.930084 eV Total energy + Delta-G solvation = -3407.903613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22318 -40.43943 -38.98645 -36.74705 -35.25794 -34.57327 -34.02568 -31.79571 -30.42612 -29.41058 -26.81014 -24.94319 -24.13645 -23.23958 -21.43633 -21.19923 -20.14693 -19.37425 -18.47972 -17.79910 -17.71074 -17.51689 -16.99045 -16.37935 -16.23450 -15.88391 -15.62475 -15.11892 -15.02771 -14.71073 -14.57796 -14.00622 -13.87315 -13.75742 -13.10467 -12.97725 -12.81361 -12.76892 -12.60254 -12.43120 -12.18449 -11.87663 -11.85916 -11.76467 -11.66257 -11.27505 -11.11293 -10.93642 -10.87049 -10.61762 -9.70563 -9.11361 -8.40028 -5.33898 1.59528 1.60378 1.69822 1.69863 1.84316 1.92262 2.70114 2.71157 3.30403 3.39761 3.59432 3.63944 3.80001 3.95256 4.05592 4.07093 4.15798 4.26028 4.33041 4.47494 4.53431 4.59810 4.62290 4.66722 4.74863 4.78523 4.83008 4.93855 5.01641 5.13796 5.17417 5.20855 5.32969 5.40068 5.58576 5.93705 6.51095 6.51159 6.53148 7.09335 7.12402 7.41932 7.99637 8.10476 9.12416 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.061630 B = 0.002293 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.214027 B =12207.744845 C =12521.925206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.102 4.102 3 Si 1.130 2.870 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.337 4.337 8 H 0.063 0.937 9 N -0.751 5.751 10 C 0.169 3.831 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.119 4.119 14 C 0.106 3.894 15 N -0.619 5.619 16 C 0.515 3.485 17 O -0.596 6.596 18 C -0.122 4.122 19 C -0.089 4.089 20 C -0.131 4.131 21 C 0.505 3.495 22 N -0.839 5.839 23 O -0.606 6.606 24 C 0.117 3.883 25 H 0.246 0.754 26 H 0.364 0.636 27 H 0.013 0.987 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.420 0.580 40 H 0.403 0.597 41 H 0.062 0.938 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -24.227 9.556 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.293 4.293 3 Si 0.955 3.045 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.219 1.219 7 C -0.469 4.469 8 H 0.081 0.919 9 N -0.396 5.396 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.016 4.016 15 N -0.353 5.353 16 C 0.306 3.694 17 O -0.477 6.477 18 C -0.161 4.161 19 C -0.128 4.128 20 C -0.170 4.170 21 C 0.291 3.709 22 N -0.403 5.403 23 O -0.487 6.487 24 C -0.007 4.007 25 H 0.057 0.943 26 H 0.197 0.803 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.252 0.748 40 H 0.234 0.766 41 H 0.080 0.920 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.857 -22.985 8.738 25.815 hybrid contribution 0.008 -1.807 -0.309 1.833 sum -7.850 -24.792 8.429 27.337 Atomic orbital electron populations 1.70964 1.07003 1.28016 1.56075 1.27178 0.97200 1.04516 1.00441 0.82588 0.73435 0.71589 0.76929 1.20928 1.20239 1.21854 1.20399 0.92338 0.87181 1.46941 0.91878 1.42449 1.04911 1.01592 1.90696 1.20566 0.93384 0.84166 0.97633 1.22351 0.97337 0.92659 0.99405 0.90520 1.22597 1.00699 0.95859 0.96513 1.22258 0.93136 0.89765 0.96413 1.48694 1.31436 1.05760 1.49378 1.21318 0.86439 0.80835 0.80767 1.90713 1.42339 1.72423 1.42197 1.21706 0.98128 0.93040 1.03259 1.20984 0.98760 0.92757 1.00298 1.21692 1.01971 0.88787 1.04589 1.21331 0.80748 0.90275 0.78497 1.43785 1.33501 1.10329 1.52668 1.90774 1.34273 1.84079 1.39573 1.22018 0.92416 0.87659 0.98572 0.94339 0.80327 0.96879 0.95763 0.90944 0.89985 0.88287 0.88692 0.85337 0.85563 0.93777 0.93623 0.85117 0.85254 0.74764 0.76642 0.91978 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.77 13.70 21.65 0.30 -59.47 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 3 Si 1.13 51.71 29.92 68.60 2.05 53.77 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.34 -19.00 9.99 84.03 0.84 -18.17 16 8 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.75 -37.36 5.45 -343.47 -1.87 -39.23 16 10 C 0.17 6.74 5.71 86.38 0.49 7.23 16 11 C -0.10 -3.00 3.10 -9.40 -0.03 -3.03 16 12 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.12 -2.95 6.13 31.78 0.19 -2.76 16 14 C 0.11 1.83 6.49 86.73 0.56 2.39 16 15 N -0.62 -14.86 3.33 -811.81 -2.70 -17.56 16 16 C 0.52 13.13 7.85 87.66 0.69 13.82 16 17 O -0.60 -21.64 16.24 -3.04 -0.05 -21.69 16 18 C -0.12 -1.65 4.89 29.85 0.15 -1.50 16 19 C -0.09 -1.61 3.79 30.60 0.12 -1.49 16 20 C -0.13 -1.07 5.70 29.85 0.17 -0.90 16 21 C 0.50 7.69 8.10 87.66 0.71 8.40 16 22 N -0.84 -5.01 8.87 -173.53 -1.54 -6.55 16 23 O -0.61 -17.20 16.82 -3.01 -0.05 -17.25 16 24 C 0.12 3.37 6.38 86.86 0.55 3.92 16 25 H 0.25 14.90 6.77 -92.71 -0.63 14.28 16 26 H 0.36 18.31 6.37 -92.71 -0.59 17.71 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 29 H 0.07 1.92 8.01 -2.39 -0.02 1.91 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 1.08 8.06 -2.39 -0.02 1.07 16 36 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.42 -0.83 8.83 -92.71 -0.82 -1.65 16 40 H 0.40 2.36 8.93 -92.71 -0.83 1.53 16 41 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 42 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 Total: -1.00 -86.91 349.58 -0.01 -86.92 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -1.06 Total: 18.54 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.91 Total: 2.51 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.82 Total: -122.81 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.10 Total: -38.93 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.77 kcal Total: -86.91 -0.01 -86.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690760664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.011 kcal (2) G-P(sol) polarization free energy of solvation -86.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds