Wall clock time and date at job start Fri Apr 10 2020 17:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99913 * 3 2 1 6 6 H 1.48496 * 109.47428 * 150.00289 * 3 2 1 7 7 C 1.38806 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99681 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.49946 * 55.06616 * 12 11 10 14 14 C 1.53044 * 109.49464 * 175.15881 * 12 11 10 15 15 C 1.53040 * 109.53720 * 181.31609 * 14 12 11 16 16 C 1.53192 * 109.31655 * 298.63513 * 15 14 12 17 17 N 1.46932 * 108.77058 * 54.63368 * 16 15 14 18 18 C 1.34777 * 120.62623 * 126.36896 * 17 16 15 19 19 O 1.21282 * 120.00046 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00441 * 0.02562 * 18 17 16 21 21 C 1.50694 * 109.47242 * 179.97438 * 20 18 17 22 22 N 1.34778 * 119.99724 * 179.97438 * 21 20 18 23 23 O 1.21272 * 120.00263 * 359.97438 * 21 20 18 24 24 C 1.46921 * 118.74165 * 306.39262 * 17 16 15 25 25 H 0.96997 * 120.00065 * 359.97438 * 1 2 3 26 26 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 28 28 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99945 * 11 10 9 30 30 H 1.09001 * 109.46801 * 60.00058 * 11 10 9 31 31 H 1.08993 * 109.46644 * 301.33939 * 14 12 11 32 32 H 1.09007 * 109.45998 * 61.30342 * 14 12 11 33 33 H 1.09007 * 109.49595 * 178.68768 * 15 14 12 34 34 H 1.08995 * 109.52732 * 58.60848 * 15 14 12 35 35 H 1.09000 * 109.58478 * 294.85086 * 16 15 14 36 36 H 1.08994 * 109.58559 * 174.42084 * 16 15 14 37 37 H 1.09007 * 109.46688 * 300.00041 * 20 18 17 38 38 H 1.09003 * 109.47141 * 59.99240 * 20 18 17 39 39 H 0.96997 * 120.00171 * 359.97438 * 22 21 20 40 40 H 0.96999 * 120.00083 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.58664 * 293.82136 * 24 17 16 42 42 H 1.08999 * 109.58382 * 173.39733 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 6 6.3815 -3.5160 0.0007 13 1 6.0540 -4.1257 -0.8415 14 6 7.8819 -3.2396 -0.1211 15 6 8.6456 -4.5654 -0.1536 16 6 8.3984 -5.3248 1.1538 17 7 6.9494 -5.4676 1.3508 18 6 6.4018 -6.6804 1.5648 19 8 5.2043 -6.7853 1.7256 20 6 7.2775 -7.9063 1.6042 21 6 6.4262 -9.1238 1.8570 22 7 6.9981 -10.3419 1.9327 23 8 5.2267 -9.0076 1.9923 24 6 6.1087 -4.2634 1.3097 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3619 -0.0004 27 1 3.8487 -3.0425 -0.8897 28 1 3.8493 -3.0421 0.8902 29 1 5.8798 -1.6194 -0.8900 30 1 5.8798 -1.6194 0.8900 31 1 8.0759 -2.6862 -1.0398 32 1 8.2132 -2.6506 0.7342 33 1 9.7120 -4.3684 -0.2637 34 1 8.2978 -5.1657 -0.9943 35 1 8.8272 -4.7675 1.9866 36 1 8.8583 -6.3112 1.0959 37 1 7.7936 -8.0149 0.6502 38 1 8.0107 -7.8035 2.4042 39 1 7.9575 -10.4350 1.8241 40 1 6.4501 -11.1257 2.0950 41 1 6.3508 -3.6197 2.1553 42 1 5.0579 -4.5497 1.3548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698668882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:51 Heat of formation + Delta-G solvation = -67.841287 kcal Electronic energy + Delta-G solvation = -22493.426631 eV Core-core repulsion = 19087.391692 eV Total energy + Delta-G solvation = -3406.034940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65908 -39.26440 -37.54025 -35.47493 -33.97670 -33.51660 -32.16966 -31.17070 -30.45349 -27.73210 -25.50277 -24.19595 -22.34265 -21.68417 -20.85664 -20.19129 -19.13481 -17.79239 -17.55490 -17.39472 -16.19996 -16.07737 -15.87341 -14.98464 -14.73858 -14.46207 -14.27824 -13.94511 -13.74452 -13.46656 -13.41925 -13.19660 -12.92737 -12.69230 -12.32154 -12.23174 -11.55601 -11.30144 -11.27499 -11.17178 -10.87764 -10.58660 -10.50619 -10.29389 -10.18267 -9.95213 -9.93047 -9.52604 -9.50021 -8.80617 -8.67929 -7.14052 -5.68266 -3.03503 2.38453 2.62969 2.67539 3.34427 3.42419 3.44698 3.49833 4.14309 4.43144 4.57582 4.64894 4.66098 4.71954 4.81269 4.82980 4.92678 5.05550 5.17721 5.38629 5.47723 5.56247 5.57844 5.62971 5.72521 5.83273 5.90653 5.97877 6.05935 6.16962 6.26243 6.34908 6.48505 6.49961 6.85566 6.87820 6.99708 7.30011 8.01860 8.09771 8.21501 8.50990 9.30423 10.02470 10.22662 11.50479 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.003499 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.998707 B = 7999.337726 C = 9120.475519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.135 4.135 16 C 0.106 3.894 17 N -0.616 5.616 18 C 0.510 3.490 19 O -0.489 6.489 20 C -0.165 4.165 21 C 0.512 3.488 22 N -0.862 5.862 23 O -0.491 6.491 24 C 0.115 3.885 25 H 0.259 0.741 26 H 0.360 0.640 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.398 0.602 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.894 -17.205 2.220 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.173 4.173 16 C -0.017 4.017 17 N -0.352 5.352 18 C 0.295 3.705 19 O -0.360 6.360 20 C -0.208 4.208 21 C 0.294 3.706 22 N -0.428 5.428 23 O -0.362 6.362 24 C -0.007 4.007 25 H 0.069 0.931 26 H 0.192 0.808 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.226 0.774 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 26.170 -17.075 2.391 31.339 hybrid contribution 1.088 0.889 -0.060 1.406 sum 27.258 -16.186 2.330 31.787 Atomic orbital electron populations 1.69713 1.05096 1.25698 1.57936 1.24686 0.95259 0.97185 1.02285 0.86512 0.79174 0.84978 0.77673 1.21164 1.21786 1.20365 1.19112 0.80731 0.94811 1.42473 0.89196 1.42724 1.04072 1.02298 1.91199 1.20703 0.88622 0.89199 0.98802 1.21781 0.96358 0.95770 1.02167 1.21453 0.94874 0.97127 0.98110 0.90611 1.21590 0.94735 0.96552 1.02421 1.21926 1.00527 0.97373 0.97515 1.21748 0.80905 1.01020 0.98047 1.48146 1.07794 1.06870 1.72353 1.19921 0.88769 0.83749 0.78105 1.90909 1.14440 1.84689 1.45972 1.21626 0.99922 0.93287 1.05989 1.20038 0.88751 0.84499 0.77288 1.43865 1.12317 1.08975 1.77671 1.90950 1.14385 1.85188 1.45715 1.21799 0.97012 0.84705 0.97141 0.93136 0.80792 0.95611 0.95283 0.91617 0.91847 0.91484 0.91702 0.90800 0.91435 0.91234 0.90156 0.86187 0.86236 0.77436 0.76649 0.91430 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.66 13.97 55.49 0.78 -29.89 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.89 22.85 27.73 -169.99 -4.71 18.14 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 7 C -0.24 -7.25 10.47 -15.06 -0.16 -7.41 16 8 H 0.09 2.91 8.06 -52.48 -0.42 2.49 16 9 N -0.76 -19.08 5.41 -59.91 -0.32 -19.40 16 10 C 0.15 3.16 6.02 -4.04 -0.02 3.13 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.98 16 12 C -0.10 -1.18 2.34 -90.50 -0.21 -1.39 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.03 5.17 -26.69 -0.14 -1.17 16 15 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 16 C 0.11 0.67 6.34 -3.71 -0.02 0.65 16 17 N -0.62 -6.66 2.97 -172.77 -0.51 -7.17 16 18 C 0.51 6.54 7.69 -10.98 -0.08 6.45 16 19 O -0.49 -9.27 13.59 -18.96 -0.26 -9.52 16 20 C -0.17 -1.20 4.53 -29.04 -0.13 -1.33 16 21 C 0.51 5.25 8.09 -10.99 -0.09 5.16 16 22 N -0.86 -4.45 8.87 31.22 0.28 -4.17 16 23 O -0.49 -8.34 15.02 -18.95 -0.28 -8.62 16 24 C 0.12 1.52 5.32 -3.71 -0.02 1.50 16 25 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 26 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.62 6.70 -51.93 -0.35 0.28 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.27 5.93 -51.93 -0.31 -0.04 16 37 H 0.12 0.48 7.69 -51.92 -0.40 0.08 16 38 H 0.12 0.45 7.94 -51.93 -0.41 0.04 16 39 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 40 H 0.40 1.96 8.93 -40.82 -0.36 1.60 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.70 5.72 -51.93 -0.30 1.40 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -41.07 335.72 -7.78 -48.85 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.53 Total: 4.23 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.27 Total: 2.50 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.21 Total: -60.63 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.54 Total: -18.15 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -41.07 -7.78 -48.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698668882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.990 kcal (2) G-P(sol) polarization free energy of solvation -41.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds