Wall clock time and date at job start Fri Apr 10 2020 17:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99913 * 3 2 1 6 6 H 1.48496 * 109.47428 * 150.00289 * 3 2 1 7 7 C 1.38806 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99681 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.49946 * 55.06616 * 12 11 10 14 14 C 1.53044 * 109.49464 * 175.15881 * 12 11 10 15 15 C 1.53040 * 109.53720 * 181.31609 * 14 12 11 16 16 C 1.53192 * 109.31655 * 298.63513 * 15 14 12 17 17 N 1.46932 * 108.77058 * 54.63368 * 16 15 14 18 18 C 1.34777 * 120.62623 * 126.36896 * 17 16 15 19 19 O 1.21282 * 120.00046 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00441 * 0.02562 * 18 17 16 21 21 C 1.50694 * 109.47242 * 179.97438 * 20 18 17 22 22 N 1.34778 * 119.99724 * 179.97438 * 21 20 18 23 23 O 1.21272 * 120.00263 * 359.97438 * 21 20 18 24 24 C 1.46921 * 118.74165 * 306.39262 * 17 16 15 25 25 H 0.96997 * 120.00065 * 359.97438 * 1 2 3 26 26 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 28 28 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99945 * 11 10 9 30 30 H 1.09001 * 109.46801 * 60.00058 * 11 10 9 31 31 H 1.08993 * 109.46644 * 301.33939 * 14 12 11 32 32 H 1.09007 * 109.45998 * 61.30342 * 14 12 11 33 33 H 1.09007 * 109.49595 * 178.68768 * 15 14 12 34 34 H 1.08995 * 109.52732 * 58.60848 * 15 14 12 35 35 H 1.09000 * 109.58478 * 294.85086 * 16 15 14 36 36 H 1.08994 * 109.58559 * 174.42084 * 16 15 14 37 37 H 1.09007 * 109.46688 * 300.00041 * 20 18 17 38 38 H 1.09003 * 109.47141 * 59.99240 * 20 18 17 39 39 H 0.96997 * 120.00171 * 359.97438 * 22 21 20 40 40 H 0.96999 * 120.00083 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.58664 * 293.82136 * 24 17 16 42 42 H 1.08999 * 109.58382 * 173.39733 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 6 6.3815 -3.5160 0.0007 13 1 6.0540 -4.1257 -0.8415 14 6 7.8819 -3.2396 -0.1211 15 6 8.6456 -4.5654 -0.1536 16 6 8.3984 -5.3248 1.1538 17 7 6.9494 -5.4676 1.3508 18 6 6.4018 -6.6804 1.5648 19 8 5.2043 -6.7853 1.7256 20 6 7.2775 -7.9063 1.6042 21 6 6.4262 -9.1238 1.8570 22 7 6.9981 -10.3419 1.9327 23 8 5.2267 -9.0076 1.9923 24 6 6.1087 -4.2634 1.3097 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3619 -0.0004 27 1 3.8487 -3.0425 -0.8897 28 1 3.8493 -3.0421 0.8902 29 1 5.8798 -1.6194 -0.8900 30 1 5.8798 -1.6194 0.8900 31 1 8.0759 -2.6862 -1.0398 32 1 8.2132 -2.6506 0.7342 33 1 9.7120 -4.3684 -0.2637 34 1 8.2978 -5.1657 -0.9943 35 1 8.8272 -4.7675 1.9866 36 1 8.8583 -6.3112 1.0959 37 1 7.7936 -8.0149 0.6502 38 1 8.0107 -7.8035 2.4042 39 1 7.9575 -10.4350 1.8241 40 1 6.4501 -11.1257 2.0950 41 1 6.3508 -3.6197 2.1553 42 1 5.0579 -4.5497 1.3548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698668882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:51 Heat of formation + Delta-G solvation = -101.798419 kcal Electronic energy + Delta-G solvation = -22494.899123 eV Core-core repulsion = 19087.391692 eV Total energy + Delta-G solvation = -3407.507431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52476 -40.10054 -38.58737 -37.08689 -35.09939 -34.57802 -33.52740 -32.57652 -31.39906 -29.13766 -26.34284 -25.73834 -23.80748 -22.53686 -22.24507 -21.13205 -19.91833 -19.64025 -18.55432 -18.14069 -17.00844 -16.88061 -16.81804 -16.57571 -15.97497 -15.78547 -15.38746 -15.10253 -14.93879 -14.74159 -14.52220 -14.23416 -14.06040 -13.91543 -13.69104 -13.09590 -12.94874 -12.87195 -12.62012 -12.33868 -12.06291 -11.90484 -11.86254 -11.73084 -11.57650 -11.20151 -11.03909 -10.98385 -10.57806 -10.52053 -9.56153 -9.35866 -8.07065 -5.42727 1.34609 1.41086 1.48677 1.64403 1.76517 1.90406 2.45965 2.73354 3.23097 3.42415 3.50619 3.84287 3.88322 3.99183 4.12514 4.17892 4.32310 4.34717 4.38270 4.43158 4.51588 4.58077 4.70935 4.73693 4.90067 4.93303 4.95838 5.07352 5.19875 5.23563 5.31657 5.38350 5.55145 5.61063 5.70059 5.96434 6.16859 6.45853 6.58303 7.02991 7.27707 7.50488 7.77035 8.00599 9.15121 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.003499 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.998707 B = 7999.337726 C = 9120.475519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.247 4.247 8 H 0.043 0.957 9 N -0.757 5.757 10 C 0.151 3.849 11 C -0.109 4.109 12 C -0.086 4.086 13 H 0.059 0.941 14 C -0.112 4.112 15 C -0.131 4.131 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.494 3.506 19 O -0.568 6.568 20 C -0.150 4.150 21 C 0.503 3.497 22 N -0.835 5.835 23 O -0.574 6.574 24 C 0.115 3.885 25 H 0.260 0.740 26 H 0.369 0.631 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.421 0.579 40 H 0.405 0.595 41 H 0.074 0.926 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.860 -16.678 2.026 37.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.378 4.378 8 H 0.062 0.938 9 N -0.403 5.403 10 C 0.025 3.975 11 C -0.147 4.147 12 C -0.106 4.106 13 H 0.077 0.923 14 C -0.149 4.149 15 C -0.169 4.169 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.282 3.718 19 O -0.445 6.445 20 C -0.192 4.192 21 C 0.287 3.713 22 N -0.401 5.401 23 O -0.451 6.451 24 C -0.009 4.009 25 H 0.069 0.931 26 H 0.203 0.797 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.254 0.746 40 H 0.236 0.764 41 H 0.092 0.908 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 32.304 -16.601 2.183 36.385 hybrid contribution -0.792 0.591 0.000 0.989 sum 31.511 -16.010 2.183 35.413 Atomic orbital electron populations 1.69926 1.07456 1.27037 1.59269 1.25696 0.96330 1.01916 1.01975 0.85217 0.78629 0.78309 0.78446 1.19826 1.21857 1.17078 1.19038 0.83043 0.93375 1.42341 0.93849 1.42673 1.02384 1.04249 1.91006 1.20840 0.92371 0.87159 0.97136 1.21682 0.92018 0.97803 1.03195 1.21347 0.97550 0.94932 0.96753 0.92270 1.21582 0.91511 0.98558 1.03256 1.21938 1.02009 0.95604 0.97319 1.22208 0.77636 1.03879 0.98631 1.48278 1.09680 1.05437 1.71099 1.21010 0.88568 0.85607 0.76583 1.90891 1.18124 1.85921 1.49543 1.21699 0.98827 0.88688 1.09987 1.20669 0.88073 0.86429 0.76094 1.43649 1.13657 1.07569 1.75221 1.90936 1.17946 1.86459 1.49774 1.21561 0.95095 0.86161 0.98051 0.93105 0.79673 0.97163 0.97076 0.90361 0.90778 0.90806 0.90607 0.87388 0.91946 0.89532 0.85978 0.81718 0.81485 0.74634 0.76385 0.90777 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -67.01 13.97 21.65 0.30 -66.71 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 47.21 27.73 68.60 1.90 49.11 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 7 C -0.25 -15.53 10.47 84.03 0.88 -14.65 16 8 H 0.04 3.05 8.06 -2.91 -0.02 3.03 16 9 N -0.76 -38.78 5.41 -343.46 -1.86 -40.64 16 10 C 0.15 6.51 6.02 86.38 0.52 7.03 16 11 C -0.11 -3.21 4.80 30.60 0.15 -3.07 16 12 C -0.09 -2.05 2.34 -10.72 -0.03 -2.07 16 13 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.11 -1.59 5.17 30.62 0.16 -1.43 16 15 C -0.13 -1.07 6.08 30.67 0.19 -0.88 16 16 C 0.10 0.75 6.34 86.36 0.55 1.30 16 17 N -0.61 -12.33 2.97 -818.91 -2.43 -14.77 16 18 C 0.49 12.62 7.69 87.66 0.67 13.30 16 19 O -0.57 -23.47 13.59 20.41 0.28 -23.19 16 20 C -0.15 -1.69 4.53 29.10 0.13 -1.56 16 21 C 0.50 9.88 8.09 87.65 0.71 10.59 16 22 N -0.83 -6.70 8.87 -173.54 -1.54 -8.24 16 23 O -0.57 -20.78 15.02 20.44 0.31 -20.48 16 24 C 0.11 3.10 5.32 86.36 0.46 3.56 16 25 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 26 H 0.37 17.32 5.53 -92.70 -0.51 16.80 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.01 0.52 6.70 -2.39 -0.02 0.51 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.12 -0.04 5.93 -2.39 -0.01 -0.05 16 37 H 0.17 0.39 7.69 -2.38 -0.02 0.37 16 38 H 0.17 0.30 7.94 -2.39 -0.02 0.28 16 39 H 0.42 -0.66 8.83 -92.71 -0.82 -1.48 16 40 H 0.41 3.41 8.93 -92.71 -0.83 2.58 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.87 5.72 -2.39 -0.01 1.86 16 Total: -1.00 -101.85 335.72 0.65 -101.20 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -1.17 Total: 15.41 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.86 Total: 8.30 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -5.53 Total: -130.36 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: 0.58 Total: -43.67 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.11 kcal Total: -101.85 0.65 -101.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698668882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.597 kcal (2) G-P(sol) polarization free energy of solvation -101.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds