Wall clock time and date at job start Fri Apr 10 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00318 * 4 2 1 6 6 N 1.34777 * 120.00137 * 300.00533 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.46847 * 304.99833 * 8 7 6 10 10 O 1.42903 * 109.47256 * 64.99491 * 8 7 6 11 11 C 1.52999 * 109.46954 * 184.99888 * 8 7 6 12 12 N 1.46500 * 109.46991 * 179.97438 * 11 8 7 13 13 C 1.36928 * 120.00216 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.38815 * 120.00246 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00191 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47022 * 60.00112 * 17 15 13 19 19 H 1.48496 * 109.46957 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46770 * 300.00204 * 17 15 13 21 21 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 22 22 C 1.34436 * 126.82193 * 324.99723 * 21 2 1 23 23 N 1.30830 * 108.07314 * 179.97438 * 22 21 2 24 24 C 1.33243 * 109.83269 * 0.02562 * 23 22 21 25 25 N 1.30718 * 108.94209 * 359.75613 * 24 23 22 26 26 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 28 28 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 31 31 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 32 32 H 0.96702 * 113.99511 * 60.00086 * 10 8 7 33 33 H 1.08996 * 109.46904 * 299.99229 * 11 8 7 34 34 H 1.08995 * 109.47393 * 60.00173 * 11 8 7 35 35 H 0.97010 * 119.99975 * 359.97438 * 12 11 8 36 36 H 0.97001 * 119.99587 * 179.97438 * 16 15 13 37 37 H 1.07996 * 125.96104 * 359.93363 * 22 21 2 38 38 H 1.07998 * 125.52819 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6858 -0.2187 4.9000 9 1 1.9741 0.8316 4.8560 10 8 0.2616 -0.3196 4.9607 11 6 2.2963 -0.8634 6.1460 12 7 1.8087 -0.1722 7.3422 13 6 2.2219 -0.5772 8.5832 14 1 2.9075 -1.4060 8.6803 15 6 1.7603 0.0781 9.7166 16 7 0.9252 1.0885 9.5982 17 14 2.3245 -0.4740 11.4096 18 1 3.8017 -0.3542 11.5026 19 1 1.6918 0.3814 12.4455 20 1 1.9279 -1.8886 11.6265 21 7 2.0184 -0.6906 -1.1962 22 6 1.4559 -1.7519 -1.7999 23 7 2.1934 -2.0693 -2.8329 24 6 3.2307 -1.2376 -2.9204 25 7 3.1645 -0.3724 -1.9428 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.1492 0.5389 2.5435 30 1 1.8325 -1.9681 3.6509 31 1 3.2854 -0.9398 3.6506 32 1 -0.0669 -1.2282 5.0019 33 1 2.0079 -1.9136 6.1900 34 1 3.3825 -0.7864 6.0998 35 1 1.1932 0.5726 7.2550 36 1 0.6024 1.5461 10.3903 37 1 0.5532 -2.2552 -1.4864 38 1 3.9993 -1.2706 -3.6783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753909720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:06 Heat of formation + Delta-G solvation = 20.865955 kcal Electronic energy + Delta-G solvation = -21647.448315 eV Core-core repulsion = 18141.719666 eV Total energy + Delta-G solvation = -3505.728648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38161 -40.12107 -37.81283 -35.38011 -34.64253 -34.09202 -31.65183 -31.39990 -30.50975 -29.03335 -26.09470 -25.06249 -23.01672 -22.21586 -22.02479 -21.54245 -20.39288 -18.29745 -17.46426 -17.19471 -16.48033 -16.24072 -15.78473 -15.49384 -15.17083 -14.78640 -14.51810 -14.49679 -14.04030 -13.74901 -13.32168 -13.06499 -13.05627 -12.79330 -12.65388 -12.41326 -11.99930 -11.86800 -11.01759 -10.85025 -10.78451 -10.67032 -10.27950 -10.25616 -10.00342 -9.96555 -9.82139 -9.54982 -9.37334 -8.95899 -7.00661 -5.81770 -3.11862 1.31582 1.82424 2.17697 2.74156 2.86668 3.40518 3.44970 3.46014 3.91255 4.05196 4.16932 4.29390 4.46242 4.53144 4.60802 4.74028 4.85951 4.90927 5.05680 5.10347 5.35648 5.47818 5.50264 5.63876 5.82305 5.93573 6.05760 6.16454 6.18528 6.42237 6.45613 6.57306 7.12319 7.62559 7.77838 7.82550 7.84779 8.36343 9.48140 10.03658 10.39525 11.40404 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.051587 B = 0.002580 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.644768 B =10848.008052 C =11116.567788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.132 0.868 4 C 0.500 3.500 5 O -0.525 6.525 6 N -0.712 5.712 7 C 0.090 3.910 8 C 0.090 3.910 9 H 0.105 0.895 10 O -0.552 6.552 11 C 0.127 3.873 12 N -0.725 5.725 13 C -0.246 4.246 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 N -0.362 5.362 22 C 0.270 3.730 23 N -0.547 5.547 24 C 0.199 3.801 25 N -0.314 5.314 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.407 0.593 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.374 0.626 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.389 0.611 36 H 0.256 0.744 37 H 0.215 0.785 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -1.440 -22.675 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.150 0.850 4 C 0.283 3.717 5 O -0.400 6.400 6 N -0.365 5.365 7 C -0.034 4.034 8 C 0.030 3.970 9 H 0.123 0.877 10 O -0.357 6.357 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 N -0.153 5.153 22 C -0.027 4.027 23 N -0.274 5.274 24 C -0.104 4.104 25 N -0.141 5.141 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.221 0.779 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.224 0.776 36 H 0.066 0.934 37 H 0.231 0.769 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.480 -1.241 -22.672 22.754 hybrid contribution -0.195 -0.351 1.272 1.334 sum -1.674 -1.593 -21.400 21.524 Atomic orbital electron populations 1.22203 0.89817 1.04704 1.05368 1.21217 0.96534 0.98079 0.81009 0.84986 1.20561 0.81172 0.85255 0.84733 1.90794 1.36926 1.25845 1.86438 1.45848 1.53320 1.32327 1.04971 1.22190 1.00441 0.96872 0.83913 1.22391 0.81545 1.00926 0.92174 0.87672 1.86574 1.19852 1.32649 1.96593 1.21184 0.96893 0.95341 0.86800 1.42212 1.55729 1.38989 1.00111 1.19165 1.22354 1.12579 0.83618 0.91264 1.24765 0.99775 0.98297 0.97922 1.69664 1.35820 1.23694 1.28616 0.86249 0.78063 0.77746 0.83990 1.21204 1.21608 1.21209 1.50056 1.19221 1.24510 1.21494 1.25900 0.99170 0.87900 0.89752 1.70569 1.07168 1.28754 1.20859 1.25997 0.97241 0.89995 0.97130 1.78054 1.02832 1.25180 1.08026 0.90611 0.88509 0.89892 0.75768 0.90768 0.90230 0.77859 0.95915 0.95370 0.77629 0.93373 0.76880 0.76626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.75 37.16 0.33 -0.35 16 2 C 0.14 1.07 3.77 -69.08 -0.26 0.81 16 3 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.50 5.39 7.22 -10.99 -0.08 5.31 16 5 O -0.52 -8.15 16.42 5.55 0.09 -8.06 16 6 N -0.71 -6.68 5.40 -60.29 -0.33 -7.01 16 7 C 0.09 1.04 5.31 -4.04 -0.02 1.02 16 8 C 0.09 1.23 3.09 -26.73 -0.08 1.15 16 9 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 10 O -0.55 -7.74 13.03 -35.23 -0.46 -8.20 16 11 C 0.13 2.33 5.92 -4.04 -0.02 2.30 16 12 N -0.73 -17.77 5.49 -59.91 -0.33 -18.10 16 13 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 14 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 17 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 N -0.36 -3.77 3.04 -57.25 -0.17 -3.95 16 22 C 0.27 2.63 11.77 -90.65 -1.07 1.57 16 23 N -0.55 -6.33 11.19 -15.83 -0.18 -6.50 16 24 C 0.20 2.16 13.03 -91.81 -1.20 0.97 16 25 N -0.31 -3.86 12.70 29.29 0.37 -3.49 16 26 H 0.07 0.29 7.22 -51.93 -0.38 -0.09 16 27 H 0.10 0.28 7.56 -51.93 -0.39 -0.12 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.41 2.93 7.89 -40.82 -0.32 2.61 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.37 4.34 9.05 45.56 0.41 4.75 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.39 10.19 7.54 -40.82 -0.31 9.88 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.21 1.25 7.32 -52.49 -0.38 0.86 16 38 H 0.22 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -37.23 333.33 -7.23 -44.46 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.30 Total: 10.40 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.65 Total: 5.44 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.09 Total: -66.16 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.37 Total: -16.26 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.23 -7.23 -44.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.327 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds