Wall clock time and date at job start Fri Apr 10 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00318 * 4 2 1 6 6 N 1.34777 * 120.00137 * 300.00533 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.46847 * 304.99833 * 8 7 6 10 10 O 1.42903 * 109.47256 * 64.99491 * 8 7 6 11 11 C 1.52999 * 109.46954 * 184.99888 * 8 7 6 12 12 N 1.46500 * 109.46991 * 179.97438 * 11 8 7 13 13 C 1.36928 * 120.00216 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.38815 * 120.00246 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00191 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47022 * 60.00112 * 17 15 13 19 19 H 1.48496 * 109.46957 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46770 * 300.00204 * 17 15 13 21 21 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 22 22 C 1.34436 * 126.82193 * 324.99723 * 21 2 1 23 23 N 1.30830 * 108.07314 * 179.97438 * 22 21 2 24 24 C 1.33243 * 109.83269 * 0.02562 * 23 22 21 25 25 N 1.30718 * 108.94209 * 359.75613 * 24 23 22 26 26 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 28 28 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 31 31 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 32 32 H 0.96702 * 113.99511 * 60.00086 * 10 8 7 33 33 H 1.08996 * 109.46904 * 299.99229 * 11 8 7 34 34 H 1.08995 * 109.47393 * 60.00173 * 11 8 7 35 35 H 0.97010 * 119.99975 * 359.97438 * 12 11 8 36 36 H 0.97001 * 119.99587 * 179.97438 * 16 15 13 37 37 H 1.07996 * 125.96104 * 359.93363 * 22 21 2 38 38 H 1.07998 * 125.52819 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6858 -0.2187 4.9000 9 1 1.9741 0.8316 4.8560 10 8 0.2616 -0.3196 4.9607 11 6 2.2963 -0.8634 6.1460 12 7 1.8087 -0.1722 7.3422 13 6 2.2219 -0.5772 8.5832 14 1 2.9075 -1.4060 8.6803 15 6 1.7603 0.0781 9.7166 16 7 0.9252 1.0885 9.5982 17 14 2.3245 -0.4740 11.4096 18 1 3.8017 -0.3542 11.5026 19 1 1.6918 0.3814 12.4455 20 1 1.9279 -1.8886 11.6265 21 7 2.0184 -0.6906 -1.1962 22 6 1.4559 -1.7519 -1.7999 23 7 2.1934 -2.0693 -2.8329 24 6 3.2307 -1.2376 -2.9204 25 7 3.1645 -0.3724 -1.9428 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.1492 0.5389 2.5435 30 1 1.8325 -1.9681 3.6509 31 1 3.2854 -0.9398 3.6506 32 1 -0.0669 -1.2282 5.0019 33 1 2.0079 -1.9136 6.1900 34 1 3.3825 -0.7864 6.0998 35 1 1.1932 0.5726 7.2550 36 1 0.6024 1.5461 10.3903 37 1 0.5532 -2.2552 -1.4864 38 1 3.9993 -1.2706 -3.6783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753909720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:06 Heat of formation + Delta-G solvation = -8.991402 kcal Electronic energy + Delta-G solvation = -21648.743027 eV Core-core repulsion = 18141.719666 eV Total energy + Delta-G solvation = -3507.023360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.143 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.12840 -41.01816 -39.00185 -36.11041 -36.08574 -35.40281 -33.20665 -32.39035 -31.39009 -30.22754 -27.30729 -26.04042 -24.54824 -23.12197 -22.82738 -22.79051 -21.23902 -19.34773 -18.98521 -18.16836 -17.60798 -17.26666 -16.62496 -16.45739 -16.37146 -16.06478 -15.63581 -15.45175 -15.18175 -14.93543 -14.70405 -14.23431 -14.02034 -13.65327 -13.40621 -13.30311 -13.23911 -12.96210 -12.73042 -12.50457 -12.21256 -11.98879 -11.81759 -11.57423 -11.09678 -11.03692 -10.96444 -10.80804 -10.53783 -10.27713 -9.01943 -7.95838 -5.25097 0.56318 1.16654 1.35110 1.47559 1.50005 1.56296 1.96018 2.06569 2.55341 3.29423 3.36262 3.45017 3.46018 3.54097 3.58774 3.77213 3.95534 4.00989 4.19340 4.25572 4.39097 4.58199 4.60978 4.65118 4.70233 4.92487 5.06582 5.16612 5.22179 5.25630 5.44342 5.47164 5.78137 6.25500 6.34490 6.79926 7.00709 7.07119 7.33099 8.08347 8.31615 9.26978 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.051587 B = 0.002580 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.644768 B =10848.008052 C =11116.567788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.146 0.854 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.698 5.698 7 C 0.103 3.897 8 C 0.111 3.889 9 H 0.104 0.896 10 O -0.559 6.559 11 C 0.120 3.880 12 N -0.739 5.739 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.073 4.073 16 N -0.966 5.966 17 Si 0.973 3.027 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.278 1.278 21 N -0.368 5.368 22 C 0.269 3.731 23 N -0.574 5.574 24 C 0.194 3.806 25 N -0.350 5.350 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.420 0.580 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.386 0.614 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.248 0.752 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -1.706 -23.271 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.164 0.836 4 C 0.287 3.713 5 O -0.455 6.455 6 N -0.351 5.351 7 C -0.022 4.022 8 C 0.050 3.950 9 H 0.122 0.878 10 O -0.366 6.366 11 C -0.007 4.007 12 N -0.382 5.382 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.802 3.198 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.204 1.204 21 N -0.158 5.158 22 C -0.027 4.027 23 N -0.302 5.302 24 C -0.109 4.109 25 N -0.177 5.177 26 H 0.100 0.900 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.258 0.742 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.211 0.789 36 H 0.061 0.939 37 H 0.263 0.737 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.076 -1.510 -23.286 23.427 hybrid contribution 0.001 -0.313 1.407 1.441 sum -2.074 -1.823 -21.879 22.053 Atomic orbital electron populations 1.22270 0.86689 1.05621 1.06869 1.21462 0.98706 0.97727 0.78621 0.83629 1.21083 0.80089 0.84529 0.85602 1.90777 1.39295 1.28260 1.87151 1.45674 1.52930 1.32372 1.04097 1.21876 0.99811 0.96805 0.83695 1.22054 0.81335 1.00548 0.91012 0.87814 1.86557 1.19634 1.33868 1.96510 1.21408 0.97060 0.95502 0.86753 1.42383 1.55605 1.39120 1.01117 1.19584 1.21504 1.12069 0.85050 0.90760 1.25572 1.00582 0.98868 1.01586 1.69815 1.37539 1.25173 1.29129 0.85225 0.77721 0.77382 0.79493 1.20470 1.22102 1.20362 1.50225 1.18809 1.24902 1.21902 1.26578 0.99657 0.87433 0.89035 1.70577 1.07934 1.29588 1.22105 1.26586 0.97585 0.89384 0.97312 1.77972 1.04271 1.26464 1.09010 0.90011 0.86784 0.88558 0.74165 0.90546 0.91101 0.76525 0.95180 0.95230 0.78925 0.93937 0.73661 0.74144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.75 71.98 0.63 -0.17 16 2 C 0.14 1.89 3.77 44.24 0.17 2.06 16 3 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.50 10.04 7.22 87.66 0.63 10.67 16 5 O -0.58 -17.52 16.42 -3.04 -0.05 -17.57 16 6 N -0.70 -11.68 5.40 -463.04 -2.50 -14.18 16 7 C 0.10 2.22 5.31 86.38 0.46 2.68 16 8 C 0.11 2.88 3.09 30.59 0.09 2.98 16 9 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 10 O -0.56 -14.67 13.03 -148.98 -1.94 -16.61 16 11 C 0.12 4.30 5.92 86.38 0.51 4.81 16 12 N -0.74 -35.97 5.49 -343.47 -1.89 -37.85 16 13 C -0.25 -13.69 9.99 84.04 0.84 -12.85 16 14 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 17 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 N -0.37 -7.18 3.04 -335.03 -1.02 -8.20 16 22 C 0.27 4.87 11.77 180.36 2.12 6.99 16 23 N -0.57 -12.82 11.19 -204.00 -2.28 -15.10 16 24 C 0.19 4.11 13.03 180.76 2.36 6.46 16 25 N -0.35 -8.40 12.70 -61.24 -0.78 -9.18 16 26 H 0.08 0.36 7.22 -2.38 -0.02 0.34 16 27 H 0.11 0.23 7.56 -2.39 -0.02 0.21 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.42 4.92 7.89 -92.71 -0.73 4.19 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.39 8.16 9.05 -74.06 -0.67 7.50 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.38 19.84 7.54 -92.70 -0.70 19.14 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.25 2.30 7.32 -2.91 -0.02 2.28 16 38 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -80.54 333.33 -0.85 -81.39 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.99 Total: 27.98 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 8.28 Total: 19.94 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -8.18 Total: -142.56 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.99 Total: -34.17 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -80.54 -0.85 -81.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.403 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds