Wall clock time and date at job start Fri Apr 10 2020 17:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00094 * 3 2 1 5 5 H 1.48494 * 109.47355 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47050 * 150.00572 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 11 11 C 1.53947 * 86.11800 * 204.64345 * 10 9 7 12 12 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.76763 * 269.65820 * 12 9 7 14 14 C 1.52997 * 113.76977 * 41.05686 * 12 9 7 15 15 N 1.46505 * 109.47296 * 281.49383 * 14 12 9 16 16 C 1.34770 * 120.00116 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99984 * 180.02562 * 16 15 14 19 19 N 1.46900 * 109.47299 * 179.97438 * 18 16 15 20 20 C 1.47018 * 111.00044 * 293.63600 * 19 18 16 21 21 C 1.53091 * 109.25759 * 177.60776 * 20 19 18 22 22 O 1.43014 * 109.26235 * 56.84714 * 21 20 19 23 23 C 1.43019 * 113.73454 * 301.33126 * 22 21 20 24 24 C 1.47005 * 111.00233 * 170.00063 * 19 18 16 25 25 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.77250 * 90.33928 * 10 9 7 27 27 H 1.08995 * 113.76824 * 318.94287 * 10 9 7 28 28 H 1.08997 * 113.74250 * 222.05166 * 11 10 9 29 29 H 1.08993 * 113.84054 * 90.74934 * 11 10 9 30 30 H 1.09001 * 109.47378 * 41.49154 * 14 12 9 31 31 H 1.08995 * 109.47542 * 161.49544 * 14 12 9 32 32 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.46705 * 300.00020 * 18 16 15 34 34 H 1.08997 * 109.47341 * 60.00143 * 18 16 15 35 35 H 1.08996 * 109.50280 * 297.54112 * 20 19 18 36 36 H 1.09006 * 109.50681 * 57.67117 * 20 19 18 37 37 H 1.09002 * 109.50717 * 296.91114 * 21 20 19 38 38 H 1.08999 * 109.50970 * 176.78337 * 21 20 19 39 39 H 1.08998 * 109.50445 * 298.73091 * 23 22 21 40 40 H 1.09003 * 109.50165 * 178.60681 * 23 22 21 41 41 H 1.09010 * 109.50869 * 302.32926 * 24 19 18 42 42 H 1.09002 * 109.51171 * 62.45459 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1032 -2.7574 -0.0019 11 6 0.3471 -4.0835 0.6373 12 6 1.7202 -3.8101 -0.0029 13 1 1.8320 -4.2341 -1.0008 14 6 2.9025 -4.1228 0.9165 15 7 4.1498 -3.7190 0.2626 16 6 5.3288 -3.9005 0.8897 17 8 5.3574 -4.3985 1.9952 18 6 6.6118 -3.4845 0.2174 19 7 7.7470 -3.7848 1.1000 20 6 7.7081 -2.9514 2.3105 21 6 8.8718 -3.3378 3.2272 22 8 10.1024 -3.1970 2.5122 23 6 10.1746 -3.9954 1.3278 24 6 9.0242 -3.6156 0.3920 25 1 -0.4850 0.8400 0.0004 26 1 -0.5271 -2.8722 -0.9996 27 1 -0.7168 -2.1397 0.6538 28 1 -0.1589 -4.9599 0.2326 29 1 0.3596 -4.0654 1.7270 30 1 2.7895 -3.5759 1.8526 31 1 2.9300 -5.1929 1.1219 32 1 4.1271 -3.3217 -0.6219 33 1 6.7248 -4.0307 -0.7191 34 1 6.5845 -2.4143 0.0128 35 1 7.7971 -1.9013 2.0323 36 1 6.7647 -3.1117 2.8326 37 1 8.7539 -4.3727 3.5485 38 1 8.8808 -2.6840 4.0993 39 1 10.0946 -5.0494 1.5940 40 1 11.1259 -3.8172 0.8263 41 1 9.0416 -4.2607 -0.4866 42 1 9.1342 -2.5761 0.0830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754481645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:10 Heat of formation + Delta-G solvation = -13.535215 kcal Electronic energy + Delta-G solvation = -22870.031517 eV Core-core repulsion = 19466.351466 eV Total energy + Delta-G solvation = -3403.680052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04928 -38.95172 -37.89811 -35.54898 -34.02843 -32.22308 -31.27061 -29.73969 -27.99351 -27.46538 -24.83403 -24.11821 -23.40118 -22.05454 -20.58716 -20.18528 -19.10893 -17.21685 -16.76355 -16.47379 -16.13595 -15.65786 -15.50707 -15.18531 -15.10204 -14.65871 -14.33935 -14.00853 -13.70825 -13.55438 -13.17176 -12.94944 -12.37748 -12.20392 -11.86000 -11.52136 -11.47040 -11.33536 -11.13124 -11.03880 -10.76901 -10.69383 -10.58869 -10.06128 -9.93579 -9.78624 -9.58044 -9.28390 -8.83599 -8.61988 -8.44996 -6.93029 -5.80256 -3.12732 2.92548 3.22226 3.33799 3.38826 3.41345 3.71617 3.91520 4.39078 4.71059 4.82420 4.87947 4.99521 5.07390 5.14076 5.18886 5.28850 5.30845 5.37029 5.40979 5.53054 5.59422 5.62561 5.69533 5.86078 5.88971 5.89775 6.07550 6.28777 6.38250 6.59702 6.68977 6.70219 6.79958 6.88636 7.01358 7.21350 7.38189 7.55802 7.88375 7.94760 8.56350 9.00300 9.67294 10.55971 11.36484 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.004257 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.934061 B = 6575.296446 C = 7617.415013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.126 3.874 15 N -0.715 5.715 16 C 0.512 3.488 17 O -0.535 6.535 18 C 0.034 3.966 19 N -0.518 5.518 20 C 0.011 3.989 21 C 0.067 3.933 22 O -0.390 6.390 23 C 0.066 3.934 24 C 0.016 3.984 25 H 0.253 0.747 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.961 -8.967 -0.261 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.412 6.412 18 C -0.097 4.097 19 N -0.244 5.244 20 C -0.116 4.116 21 C -0.010 4.010 22 O -0.308 6.308 23 C -0.011 4.011 24 C -0.112 4.112 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.102 -9.331 0.763 16.927 hybrid contribution 0.191 1.928 -1.107 2.232 sum 14.293 -7.402 -0.344 16.100 Atomic orbital electron populations 1.69809 1.04955 1.25269 1.56558 1.24751 0.95609 0.97373 1.02594 0.86211 0.78685 0.83891 0.77501 1.21681 1.21587 1.20798 1.18915 0.90072 0.81946 1.43746 0.90486 1.46077 1.02307 0.98566 1.85962 1.22199 0.87933 0.89629 0.96893 1.23767 0.96160 0.98961 1.00571 1.22509 0.92407 0.87629 0.95648 0.93340 1.21729 0.82246 0.98653 0.97266 1.45954 1.06048 1.63149 1.21461 1.20317 0.84842 0.78894 0.86289 1.90630 1.87098 1.43794 1.19719 1.21996 0.89956 1.00986 0.96744 1.61875 1.00865 1.55460 1.06180 1.22989 1.01886 0.94496 0.92276 1.22658 0.82500 1.01838 0.93982 1.87961 1.37370 1.67192 1.38294 1.22622 0.97571 0.95324 0.85622 1.22828 0.89976 1.00730 0.97664 0.93662 0.95583 0.90829 0.92812 0.90509 0.91072 0.92212 0.76449 0.87900 0.91639 0.94357 0.87378 0.92032 0.88465 0.92223 0.88549 0.89557 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 11.38 55.49 0.63 -26.04 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -5.78 10.51 -15.06 -0.16 -5.94 16 8 H 0.08 1.94 7.80 -52.49 -0.41 1.53 16 9 N -0.60 -14.41 3.57 -170.75 -0.61 -15.02 16 10 C 0.16 3.59 7.51 -2.98 -0.02 3.57 16 11 C -0.16 -2.80 7.86 -25.80 -0.20 -3.00 16 12 C 0.13 2.35 4.33 -66.86 -0.29 2.06 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.13 2.22 5.54 -4.04 -0.02 2.19 16 15 N -0.72 -11.53 5.53 -60.29 -0.33 -11.86 16 16 C 0.51 8.23 7.54 -10.99 -0.08 8.15 16 17 O -0.54 -10.27 14.35 5.56 0.08 -10.19 16 18 C 0.03 0.43 5.45 -4.97 -0.03 0.41 16 19 N -0.52 -6.71 4.46 -235.75 -1.05 -7.76 16 20 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 21 C 0.07 0.80 7.01 37.20 0.26 1.06 16 22 O -0.39 -4.81 10.83 -35.23 -0.38 -5.19 16 23 C 0.07 0.64 7.01 37.21 0.26 0.91 16 24 C 0.02 0.17 5.64 -3.72 -0.02 0.14 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 6.04 8.47 -40.82 -0.35 5.69 16 33 H 0.10 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.71 5.88 -51.93 -0.31 1.40 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.71 8.09 -51.92 -0.42 0.29 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -32.06 339.71 -8.89 -40.95 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.90 Total: 3.85 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.42 Total: 9.41 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -1.36 Total: -60.68 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.30 Total: -15.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.06 -8.89 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754481645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.414 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds