Wall clock time and date at job start Fri Apr 10 2020 17:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00094 * 3 2 1 5 5 H 1.48494 * 109.47355 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47050 * 150.00572 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 11 11 C 1.53947 * 86.11800 * 204.64345 * 10 9 7 12 12 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.76763 * 269.65820 * 12 9 7 14 14 C 1.52997 * 113.76977 * 41.05686 * 12 9 7 15 15 N 1.46505 * 109.47296 * 281.49383 * 14 12 9 16 16 C 1.34770 * 120.00116 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99984 * 180.02562 * 16 15 14 19 19 N 1.46900 * 109.47299 * 179.97438 * 18 16 15 20 20 C 1.47018 * 111.00044 * 293.63600 * 19 18 16 21 21 C 1.53091 * 109.25759 * 177.60776 * 20 19 18 22 22 O 1.43014 * 109.26235 * 56.84714 * 21 20 19 23 23 C 1.43019 * 113.73454 * 301.33126 * 22 21 20 24 24 C 1.47005 * 111.00233 * 170.00063 * 19 18 16 25 25 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.77250 * 90.33928 * 10 9 7 27 27 H 1.08995 * 113.76824 * 318.94287 * 10 9 7 28 28 H 1.08997 * 113.74250 * 222.05166 * 11 10 9 29 29 H 1.08993 * 113.84054 * 90.74934 * 11 10 9 30 30 H 1.09001 * 109.47378 * 41.49154 * 14 12 9 31 31 H 1.08995 * 109.47542 * 161.49544 * 14 12 9 32 32 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.46705 * 300.00020 * 18 16 15 34 34 H 1.08997 * 109.47341 * 60.00143 * 18 16 15 35 35 H 1.08996 * 109.50280 * 297.54112 * 20 19 18 36 36 H 1.09006 * 109.50681 * 57.67117 * 20 19 18 37 37 H 1.09002 * 109.50717 * 296.91114 * 21 20 19 38 38 H 1.08999 * 109.50970 * 176.78337 * 21 20 19 39 39 H 1.08998 * 109.50445 * 298.73091 * 23 22 21 40 40 H 1.09003 * 109.50165 * 178.60681 * 23 22 21 41 41 H 1.09010 * 109.50869 * 302.32926 * 24 19 18 42 42 H 1.09002 * 109.51171 * 62.45459 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1032 -2.7574 -0.0019 11 6 0.3471 -4.0835 0.6373 12 6 1.7202 -3.8101 -0.0029 13 1 1.8320 -4.2341 -1.0008 14 6 2.9025 -4.1228 0.9165 15 7 4.1498 -3.7190 0.2626 16 6 5.3288 -3.9005 0.8897 17 8 5.3574 -4.3985 1.9952 18 6 6.6118 -3.4845 0.2174 19 7 7.7470 -3.7848 1.1000 20 6 7.7081 -2.9514 2.3105 21 6 8.8718 -3.3378 3.2272 22 8 10.1024 -3.1970 2.5122 23 6 10.1746 -3.9954 1.3278 24 6 9.0242 -3.6156 0.3920 25 1 -0.4850 0.8400 0.0004 26 1 -0.5271 -2.8722 -0.9996 27 1 -0.7168 -2.1397 0.6538 28 1 -0.1589 -4.9599 0.2326 29 1 0.3596 -4.0654 1.7270 30 1 2.7895 -3.5759 1.8526 31 1 2.9300 -5.1929 1.1219 32 1 4.1271 -3.3217 -0.6219 33 1 6.7248 -4.0307 -0.7191 34 1 6.5845 -2.4143 0.0128 35 1 7.7971 -1.9013 2.0323 36 1 6.7647 -3.1117 2.8326 37 1 8.7539 -4.3727 3.5485 38 1 8.8808 -2.6840 4.0993 39 1 10.0946 -5.0494 1.5940 40 1 11.1259 -3.8172 0.8263 41 1 9.0416 -4.2607 -0.4866 42 1 9.1342 -2.5761 0.0830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754481645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:09 Heat of formation + Delta-G solvation = -38.222571 kcal Electronic energy + Delta-G solvation = -22871.102041 eV Core-core repulsion = 19466.351466 eV Total energy + Delta-G solvation = -3404.750576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16385 -40.15305 -39.42630 -36.54076 -35.43473 -34.19962 -32.13788 -30.88643 -29.85798 -28.81177 -25.90920 -25.28886 -25.00689 -23.56800 -21.62454 -21.38493 -20.77577 -18.78974 -17.92665 -17.74738 -17.18469 -17.02656 -16.76030 -16.56142 -16.04486 -15.97685 -15.67414 -15.52496 -15.06564 -14.77581 -14.71830 -14.16326 -13.69275 -13.37588 -13.16880 -13.02034 -12.95646 -12.69614 -12.56993 -12.39854 -12.33559 -12.27677 -11.84479 -11.58427 -11.51812 -11.33242 -10.93685 -10.82749 -10.52343 -9.97434 -9.44578 -8.87789 -7.86608 -5.17913 1.42580 1.44027 1.51275 1.67683 2.09223 2.46577 2.79645 2.96679 3.33492 3.39552 3.75269 3.93174 3.96139 4.01632 4.09542 4.16168 4.20212 4.25972 4.35885 4.37604 4.44091 4.60676 4.65691 4.72517 4.73236 4.80759 4.86060 4.89262 4.98652 5.06706 5.11929 5.34467 5.49930 5.62339 5.73149 5.76214 5.90034 5.98813 6.15078 6.62807 6.95825 7.30813 7.66148 8.61142 9.30443 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.004257 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.934061 B = 6575.296446 C = 7617.415013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.211 4.211 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.136 3.864 15 N -0.714 5.714 16 C 0.508 3.492 17 O -0.570 6.570 18 C 0.040 3.960 19 N -0.532 5.532 20 C 0.014 3.986 21 C 0.071 3.929 22 O -0.404 6.404 23 C 0.060 3.940 24 C 0.017 3.983 25 H 0.245 0.755 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -10.273 -1.404 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.339 4.339 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.011 3.989 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.449 6.449 18 C -0.090 4.090 19 N -0.258 5.258 20 C -0.114 4.114 21 C -0.006 4.006 22 O -0.322 6.322 23 C -0.016 4.016 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.153 0.847 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.165 -10.669 -0.404 19.373 hybrid contribution -0.415 2.235 -0.755 2.395 sum 15.751 -8.435 -1.160 17.905 Atomic orbital electron populations 1.69994 1.06281 1.25118 1.59065 1.25491 0.96371 1.00436 1.04056 0.85265 0.77606 0.80229 0.77386 1.21238 1.22742 1.19870 1.19293 0.90675 0.83044 1.40918 0.89674 1.46424 1.03238 1.00020 1.85924 1.22166 0.87181 0.91812 0.96435 1.23564 0.95298 0.97793 1.00383 1.22674 0.93236 0.84497 0.96846 0.90979 1.21472 0.82692 0.99181 0.95576 1.45930 1.05728 1.63142 1.21674 1.20960 0.85745 0.77946 0.85841 1.90621 1.87631 1.45370 1.21295 1.22018 0.88034 1.01642 0.97342 1.61880 1.02119 1.55414 1.06375 1.22868 1.01169 0.94391 0.92979 1.22621 0.82049 1.01833 0.94061 1.87944 1.37173 1.67841 1.39291 1.22861 0.98778 0.95082 0.84911 1.22941 0.88463 1.01393 0.98242 0.94640 0.95967 0.94443 0.88805 0.90531 0.94342 0.90378 0.75645 0.84713 0.91077 0.94875 0.90112 0.92440 0.87352 0.92146 0.85917 0.87080 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.98 11.38 21.65 0.25 -56.73 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.21 -11.06 10.51 84.03 0.88 -10.18 16 8 H 0.09 4.21 7.80 -2.91 -0.02 4.19 16 9 N -0.63 -29.79 3.57 -694.14 -2.48 -32.27 16 10 C 0.15 6.77 7.51 86.48 0.65 7.42 16 11 C -0.13 -4.46 7.86 31.26 0.25 -4.22 16 12 C 0.13 4.72 4.33 45.09 0.20 4.91 16 13 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 14 C 0.14 4.57 5.54 86.38 0.48 5.05 16 15 N -0.71 -21.70 5.53 -463.06 -2.56 -24.26 16 16 C 0.51 15.62 7.54 87.66 0.66 16.28 16 17 O -0.57 -21.62 14.35 -3.02 -0.04 -21.66 16 18 C 0.04 0.92 5.45 85.56 0.47 1.39 16 19 N -0.53 -12.75 4.46 -899.79 -4.01 -16.76 16 20 C 0.01 0.38 5.29 86.31 0.46 0.83 16 21 C 0.07 1.64 7.01 72.01 0.50 2.15 16 22 O -0.40 -9.28 10.83 -148.98 -1.61 -10.89 16 23 C 0.06 1.03 7.01 72.01 0.50 1.53 16 24 C 0.02 0.30 5.64 86.31 0.49 0.78 16 25 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 1.95 7.15 -2.39 -0.02 1.93 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.41 11.31 8.47 -92.71 -0.79 10.52 16 33 H 0.14 2.21 8.04 -2.39 -0.02 2.19 16 34 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 2.59 5.88 -2.38 -0.01 2.58 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.38 8.09 -2.38 -0.02 1.36 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -70.56 339.71 -2.22 -72.77 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.22 Total: 20.05 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.00 Total: 22.46 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -8.81 Total: -130.02 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.66 Total: -32.55 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.56 -2.22 -72.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754481645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.550 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds