Wall clock time and date at job start Fri Apr 10 2020 17:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47331 * 240.00102 * 3 2 1 5 5 H 1.48501 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47325 * 120.00164 * 3 2 1 7 7 C 1.38812 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49236 * 359.97438 * 9 7 2 11 11 C 1.53944 * 86.11365 * 155.36322 * 10 9 7 12 12 C 1.47582 * 134.49250 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87059 * 90.32269 * 12 9 7 14 14 C 1.52997 * 113.76630 * 318.93914 * 12 9 7 15 15 N 1.46499 * 109.47555 * 78.50776 * 14 12 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 N 1.46902 * 109.47027 * 179.72353 * 18 16 15 20 20 C 1.47009 * 110.99715 * 293.63172 * 19 18 16 21 21 C 1.53099 * 109.25734 * 177.60649 * 20 19 18 22 22 O 1.43018 * 109.25400 * 56.85201 * 21 20 19 23 23 C 1.43014 * 113.73874 * 301.32703 * 22 21 20 24 24 C 1.47014 * 110.99760 * 170.00137 * 19 18 16 25 25 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 26 26 H 1.08999 * 113.76560 * 41.06189 * 10 9 7 27 27 H 1.09005 * 113.87436 * 269.67804 * 10 9 7 28 28 H 1.08998 * 113.74629 * 269.26115 * 11 10 9 29 29 H 1.09004 * 113.73943 * 137.95456 * 11 10 9 30 30 H 1.08998 * 109.47382 * 318.50337 * 14 12 9 31 31 H 1.09002 * 109.47216 * 198.50774 * 14 12 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 15 14 12 33 33 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 34 34 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 35 35 H 1.08997 * 109.50792 * 297.54662 * 20 19 18 36 36 H 1.09007 * 109.50894 * 57.67782 * 20 19 18 37 37 H 1.08995 * 109.50873 * 296.91840 * 21 20 19 38 38 H 1.09003 * 109.54443 * 176.80574 * 21 20 19 39 39 H 1.09005 * 109.50677 * 298.73778 * 23 22 21 40 40 H 1.08998 * 109.54116 * 178.63249 * 23 22 21 41 41 H 1.09008 * 109.50310 * 302.32158 * 24 19 18 42 42 H 1.08992 * 109.51131 * 62.45270 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1034 -2.7574 -0.0019 11 6 0.3470 -4.0823 -0.6434 12 6 1.7201 -3.8102 -0.0019 13 1 1.8318 -4.2372 0.9947 14 6 2.9030 -4.1216 -0.9209 15 7 4.1498 -3.7188 -0.2657 16 6 5.3292 -3.8985 -0.8927 17 8 5.3583 -4.3942 -1.9992 18 6 6.6123 -3.4898 -0.2161 19 7 7.7484 -3.7932 -1.0966 20 6 7.9025 -5.2441 -1.2766 21 6 9.0569 -5.5129 -2.2456 22 8 10.2473 -4.9002 -1.7424 23 6 10.1327 -3.4870 -1.5556 24 6 8.9892 -3.1977 -0.5797 25 1 -0.4850 0.8401 0.0004 26 1 -0.7169 -2.1385 -0.6566 27 1 -0.5291 -2.8741 0.9947 28 1 0.3591 -4.0606 -1.7331 29 1 -0.1592 -4.9595 -0.2402 30 1 2.7906 -3.5736 -1.8563 31 1 2.9305 -5.1915 -1.1278 32 1 4.1264 -3.3220 0.6191 33 1 6.5889 -2.4199 -0.0088 34 1 6.7206 -4.0388 0.7192 35 1 8.1186 -5.7093 -0.3148 36 1 6.9810 -5.6603 -1.6840 37 1 8.8170 -5.0938 -3.2227 38 1 9.2122 -6.5878 -2.3386 39 1 9.9241 -3.0091 -2.5128 40 1 11.0656 -3.0961 -1.1494 41 1 8.8609 -2.1200 -0.4784 42 1 9.2227 -3.6301 0.3932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754481646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:11 Heat of formation + Delta-G solvation = -13.081853 kcal Electronic energy + Delta-G solvation = -22798.633721 eV Core-core repulsion = 19394.973329 eV Total energy + Delta-G solvation = -3403.660392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06641 -38.96030 -37.89364 -35.56806 -34.02877 -32.20749 -31.29664 -29.75034 -27.98250 -27.46926 -24.84544 -24.14608 -23.38732 -22.05216 -20.61262 -20.19324 -19.10042 -17.21917 -16.77946 -16.45060 -16.19305 -15.66685 -15.51613 -15.20600 -15.07601 -14.63754 -14.42272 -13.91590 -13.80037 -13.54534 -13.19579 -12.87823 -12.46525 -12.18212 -11.88283 -11.51900 -11.46384 -11.33765 -11.12557 -11.02999 -10.75726 -10.72022 -10.57978 -10.06284 -9.93371 -9.78733 -9.60380 -9.27275 -8.81813 -8.61320 -8.46245 -6.91920 -5.78548 -3.11188 2.91731 3.22273 3.36028 3.41158 3.42266 3.69031 3.89240 4.40940 4.70462 4.80183 4.86678 4.98110 5.06207 5.09665 5.17157 5.23095 5.35950 5.38422 5.39893 5.52239 5.59490 5.61051 5.69779 5.79697 5.83377 5.89820 6.06539 6.29462 6.38439 6.59988 6.68337 6.70307 6.78647 6.88616 6.98718 7.22356 7.38791 7.56877 7.88214 7.96261 8.56138 9.01866 9.68925 10.57211 11.38123 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.004069 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.451220 B = 6879.223304 C = 8054.796300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.715 5.715 16 C 0.511 3.489 17 O -0.535 6.535 18 C 0.035 3.965 19 N -0.518 5.518 20 C 0.013 3.987 21 C 0.066 3.934 22 O -0.390 6.390 23 C 0.065 3.935 24 C 0.017 3.983 25 H 0.254 0.746 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.402 0.598 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 -9.750 0.662 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.366 5.366 16 C 0.296 3.704 17 O -0.412 6.412 18 C -0.096 4.096 19 N -0.244 5.244 20 C -0.114 4.114 21 C -0.011 4.011 22 O -0.309 6.309 23 C -0.012 4.012 24 C -0.111 4.111 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.236 0.764 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.134 -9.636 -0.567 17.115 hybrid contribution 0.267 1.119 1.448 1.850 sum 14.401 -8.517 0.881 16.754 Atomic orbital electron populations 1.69805 1.04978 1.25387 1.56502 1.24756 0.95614 0.97409 1.02541 0.86276 0.78572 0.83508 0.77851 1.21113 1.21552 1.21295 1.18882 0.90085 0.81930 1.43870 0.90462 1.46067 1.02280 0.98544 1.85953 1.22195 0.87944 0.89644 0.96874 1.23778 0.96157 0.98957 1.00583 1.22507 0.92393 0.87685 0.95603 0.93407 1.21732 0.82273 0.98566 0.97345 1.45959 1.06075 1.63262 1.21313 1.20320 0.84904 0.78893 0.86242 1.90631 1.87107 1.43995 1.19480 1.21999 0.89915 1.03237 0.94427 1.61834 1.02575 1.12289 1.47680 1.22970 1.01465 0.87933 0.99082 1.22656 0.83671 0.98156 0.96591 1.87950 1.35877 1.20961 1.86078 1.22635 0.97720 0.82053 0.98782 1.22832 0.90243 1.00832 0.97222 0.93627 0.90831 0.95608 0.90492 0.92837 0.90980 0.92318 0.76443 0.87585 0.91992 0.94631 0.87515 0.91970 0.88549 0.92103 0.88483 0.89385 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 11.38 55.49 0.63 -26.13 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -5.82 10.51 -15.06 -0.16 -5.98 16 8 H 0.08 1.95 7.80 -52.48 -0.41 1.54 16 9 N -0.60 -14.44 3.57 -170.75 -0.61 -15.05 16 10 C 0.16 3.60 7.51 -2.98 -0.02 3.57 16 11 C -0.16 -2.80 7.86 -25.79 -0.20 -3.01 16 12 C 0.13 2.36 4.33 -66.85 -0.29 2.07 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.13 2.21 5.54 -4.04 -0.02 2.19 16 15 N -0.72 -11.52 5.53 -60.29 -0.33 -11.86 16 16 C 0.51 8.22 7.54 -10.98 -0.08 8.14 16 17 O -0.53 -10.26 14.35 5.55 0.08 -10.18 16 18 C 0.04 0.44 5.45 -4.97 -0.03 0.42 16 19 N -0.52 -6.69 4.46 -235.75 -1.05 -7.74 16 20 C 0.01 0.16 5.29 -3.71 -0.02 0.14 16 21 C 0.07 0.74 7.01 37.21 0.26 1.00 16 22 O -0.39 -4.64 10.83 -35.23 -0.38 -5.02 16 23 C 0.07 0.65 7.01 37.21 0.26 0.91 16 24 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.38 8.10 -51.93 -0.42 0.95 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.40 6.04 8.47 -40.82 -0.35 5.69 16 33 H 0.11 1.24 8.04 -51.93 -0.42 0.82 16 34 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 1.51 5.88 -51.93 -0.31 1.21 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.80 8.09 -51.92 -0.42 0.38 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -32.18 339.71 -8.89 -41.07 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.90 Total: 3.71 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.42 Total: 9.33 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.36 Total: -60.78 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.30 Total: -15.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.18 -8.89 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754481646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.989 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds