Wall clock time and date at job start Fri Apr 10 2020 17:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47331 * 240.00102 * 3 2 1 5 5 H 1.48501 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47325 * 120.00164 * 3 2 1 7 7 C 1.38812 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49236 * 359.97438 * 9 7 2 11 11 C 1.53944 * 86.11365 * 155.36322 * 10 9 7 12 12 C 1.47582 * 134.49250 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87059 * 90.32269 * 12 9 7 14 14 C 1.52997 * 113.76630 * 318.93914 * 12 9 7 15 15 N 1.46499 * 109.47555 * 78.50776 * 14 12 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 N 1.46902 * 109.47027 * 179.72353 * 18 16 15 20 20 C 1.47009 * 110.99715 * 293.63172 * 19 18 16 21 21 C 1.53099 * 109.25734 * 177.60649 * 20 19 18 22 22 O 1.43018 * 109.25400 * 56.85201 * 21 20 19 23 23 C 1.43014 * 113.73874 * 301.32703 * 22 21 20 24 24 C 1.47014 * 110.99760 * 170.00137 * 19 18 16 25 25 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 26 26 H 1.08999 * 113.76560 * 41.06189 * 10 9 7 27 27 H 1.09005 * 113.87436 * 269.67804 * 10 9 7 28 28 H 1.08998 * 113.74629 * 269.26115 * 11 10 9 29 29 H 1.09004 * 113.73943 * 137.95456 * 11 10 9 30 30 H 1.08998 * 109.47382 * 318.50337 * 14 12 9 31 31 H 1.09002 * 109.47216 * 198.50774 * 14 12 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 15 14 12 33 33 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 34 34 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 35 35 H 1.08997 * 109.50792 * 297.54662 * 20 19 18 36 36 H 1.09007 * 109.50894 * 57.67782 * 20 19 18 37 37 H 1.08995 * 109.50873 * 296.91840 * 21 20 19 38 38 H 1.09003 * 109.54443 * 176.80574 * 21 20 19 39 39 H 1.09005 * 109.50677 * 298.73778 * 23 22 21 40 40 H 1.08998 * 109.54116 * 178.63249 * 23 22 21 41 41 H 1.09008 * 109.50310 * 302.32158 * 24 19 18 42 42 H 1.08992 * 109.51131 * 62.45270 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1034 -2.7574 -0.0019 11 6 0.3470 -4.0823 -0.6434 12 6 1.7201 -3.8102 -0.0019 13 1 1.8318 -4.2372 0.9947 14 6 2.9030 -4.1216 -0.9209 15 7 4.1498 -3.7188 -0.2657 16 6 5.3292 -3.8985 -0.8927 17 8 5.3583 -4.3942 -1.9992 18 6 6.6123 -3.4898 -0.2161 19 7 7.7484 -3.7932 -1.0966 20 6 7.9025 -5.2441 -1.2766 21 6 9.0569 -5.5129 -2.2456 22 8 10.2473 -4.9002 -1.7424 23 6 10.1327 -3.4870 -1.5556 24 6 8.9892 -3.1977 -0.5797 25 1 -0.4850 0.8401 0.0004 26 1 -0.7169 -2.1385 -0.6566 27 1 -0.5291 -2.8741 0.9947 28 1 0.3591 -4.0606 -1.7331 29 1 -0.1592 -4.9595 -0.2402 30 1 2.7906 -3.5736 -1.8563 31 1 2.9305 -5.1915 -1.1278 32 1 4.1264 -3.3220 0.6191 33 1 6.5889 -2.4199 -0.0088 34 1 6.7206 -4.0388 0.7192 35 1 8.1186 -5.7093 -0.3148 36 1 6.9810 -5.6603 -1.6840 37 1 8.8170 -5.0938 -3.2227 38 1 9.2122 -6.5878 -2.3386 39 1 9.9241 -3.0091 -2.5128 40 1 11.0656 -3.0961 -1.1494 41 1 8.8609 -2.1200 -0.4784 42 1 9.2227 -3.6301 0.3932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754481646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:28:11 Heat of formation + Delta-G solvation = -37.824352 kcal Electronic energy + Delta-G solvation = -22799.706636 eV Core-core repulsion = 19394.973329 eV Total energy + Delta-G solvation = -3404.733308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15892 -40.14503 -39.41949 -36.53303 -35.43132 -34.18391 -32.12546 -30.87802 -29.84506 -28.80612 -25.90635 -25.27587 -24.99448 -23.56481 -21.61843 -21.38085 -20.76588 -18.78164 -17.91310 -17.74104 -17.18767 -17.01606 -16.75303 -16.54371 -16.06439 -15.86695 -15.76145 -15.48287 -15.00452 -14.90864 -14.61578 -14.13089 -13.73721 -13.32965 -13.16222 -13.02307 -12.90513 -12.67331 -12.59539 -12.39068 -12.30842 -12.26868 -11.81960 -11.57436 -11.51910 -11.34423 -10.94212 -10.80614 -10.50878 -9.97157 -9.39958 -8.86805 -7.84840 -5.16481 1.44829 1.47867 1.53009 1.67673 2.10060 2.48909 2.80260 2.97557 3.34773 3.40765 3.75247 3.93637 3.96710 4.02122 4.12163 4.17717 4.21496 4.24280 4.35119 4.37966 4.46245 4.62529 4.65312 4.72675 4.74400 4.81854 4.86371 4.89415 4.99470 5.06612 5.12227 5.35403 5.50372 5.63112 5.76330 5.77630 5.92385 5.99980 6.15506 6.63125 6.97096 7.31100 7.67766 8.62378 9.32000 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.004069 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.451220 B = 6879.223304 C = 8054.796300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.213 4.213 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.072 0.928 14 C 0.136 3.864 15 N -0.713 5.713 16 C 0.508 3.492 17 O -0.570 6.570 18 C 0.042 3.958 19 N -0.541 5.541 20 C 0.018 3.982 21 C 0.068 3.932 22 O -0.401 6.401 23 C 0.061 3.939 24 C 0.018 3.982 25 H 0.244 0.756 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -10.712 1.707 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.341 4.341 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.090 0.910 14 C 0.011 3.989 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.449 6.449 18 C -0.089 4.089 19 N -0.267 5.267 20 C -0.110 4.110 21 C -0.009 4.009 22 O -0.320 6.320 23 C -0.016 4.016 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.132 0.868 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.128 -10.626 0.501 19.320 hybrid contribution -0.322 1.341 1.103 1.766 sum 15.806 -9.285 1.604 18.401 Atomic orbital electron populations 1.69998 1.06341 1.25204 1.59012 1.25520 0.96390 1.00552 1.03969 0.85315 0.77225 0.79716 0.78098 1.21101 1.22620 1.19846 1.19283 0.90745 0.83025 1.41081 0.89551 1.46417 1.03201 1.00016 1.85937 1.22161 0.87207 0.91823 0.96415 1.23575 0.95318 0.97802 1.00360 1.22670 0.93222 0.84557 0.96800 0.91040 1.21471 0.82728 0.99152 0.95583 1.45935 1.05750 1.63261 1.21521 1.20972 0.85802 0.77896 0.85820 1.90622 1.87646 1.45522 1.21139 1.21980 0.87950 1.04159 0.94781 1.61811 1.03670 1.12640 1.48594 1.22870 1.00753 0.87893 0.99518 1.22672 0.83344 0.99199 0.95676 1.87937 1.36013 1.22026 1.86057 1.22819 0.98925 0.81166 0.98660 1.22899 0.89044 1.01464 0.97507 0.94664 0.94472 0.95991 0.90554 0.88816 0.94380 0.90367 0.75648 0.86380 0.89490 0.93822 0.89674 0.93160 0.86760 0.92793 0.85933 0.88117 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.12 11.38 21.65 0.25 -56.88 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.21 -11.18 10.51 84.03 0.88 -10.30 16 8 H 0.09 4.26 7.80 -2.91 -0.02 4.23 16 9 N -0.63 -29.84 3.57 -694.14 -2.48 -32.32 16 10 C 0.15 6.78 7.51 86.48 0.65 7.43 16 11 C -0.13 -4.48 7.86 31.26 0.25 -4.24 16 12 C 0.13 4.73 4.33 45.10 0.20 4.92 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.14 4.57 5.54 86.38 0.48 5.05 16 15 N -0.71 -21.65 5.53 -463.06 -2.56 -24.21 16 16 C 0.51 15.57 7.54 87.66 0.66 16.24 16 17 O -0.57 -21.57 14.35 -3.04 -0.04 -21.61 16 18 C 0.04 0.95 5.45 85.56 0.47 1.42 16 19 N -0.54 -12.95 4.46 -899.78 -4.01 -16.96 16 20 C 0.02 0.41 5.29 86.32 0.46 0.87 16 21 C 0.07 1.44 7.01 72.02 0.50 1.95 16 22 O -0.40 -8.80 10.83 -148.98 -1.61 -10.41 16 23 C 0.06 1.08 7.01 72.01 0.50 1.58 16 24 C 0.02 0.33 5.64 86.31 0.49 0.82 16 25 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.04 1.94 7.15 -2.39 -0.02 1.92 16 27 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 29 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.41 11.29 8.47 -92.71 -0.79 10.51 16 33 H 0.12 2.41 8.04 -2.38 -0.02 2.39 16 34 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 2.37 5.88 -2.38 -0.01 2.35 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.54 8.09 -2.38 -0.02 1.52 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.49 339.71 -2.22 -72.71 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.22 Total: 20.35 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 6.00 Total: 22.20 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -8.81 Total: -130.37 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.66 Total: -32.03 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.49 -2.22 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754481646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.886 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds