Wall clock time and date at job start Fri Apr 10 2020 17:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99703 * 2 1 4 4 H 1.09007 * 109.47297 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.46936 * 239.99786 * 3 2 1 6 6 O 1.42898 * 109.47761 * 119.99880 * 3 2 1 7 7 N 1.41596 * 114.00402 * 205.00003 * 6 3 2 8 8 C 1.34783 * 119.99923 * 179.97438 * 7 6 3 9 9 O 1.21585 * 119.99956 * 359.97438 * 8 7 6 10 10 N 1.34766 * 119.99596 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99997 * 179.97438 * 10 8 7 12 12 C 1.53031 * 109.45948 * 275.02901 * 11 10 8 13 13 C 1.53195 * 109.31274 * 178.59756 * 12 11 10 14 14 N 1.46928 * 108.76533 * 54.65556 * 13 12 11 15 15 C 1.36936 * 120.63134 * 126.40779 * 14 13 12 16 16 H 1.08000 * 119.99664 * 332.60233 * 15 14 13 17 17 C 1.38806 * 120.00069 * 152.60835 * 15 14 13 18 18 N 1.31618 * 120.00232 * 159.34112 * 17 15 14 19 19 Si 1.86800 * 120.00248 * 339.34413 * 17 15 14 20 20 H 1.48498 * 109.47445 * 92.93766 * 19 17 15 21 21 H 1.48501 * 109.47367 * 212.94444 * 19 17 15 22 22 H 1.48503 * 109.46570 * 332.94309 * 19 17 15 23 23 C 1.46924 * 118.73447 * 306.38643 * 14 13 12 24 24 C 1.53038 * 109.46406 * 154.97082 * 11 10 8 25 25 H 1.08002 * 120.00448 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00046 * 179.72708 * 1 2 3 27 27 H 1.08002 * 119.99919 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47304 * 59.99627 * 5 3 2 29 29 H 1.09004 * 109.47133 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.46971 * 299.99924 * 5 3 2 31 31 H 0.96999 * 119.99731 * 359.97438 * 7 6 3 32 32 H 0.96998 * 120.00497 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.45424 * 35.00381 * 11 10 8 34 34 H 1.09003 * 109.50293 * 298.56406 * 12 11 10 35 35 H 1.08999 * 109.50112 * 58.66083 * 12 11 10 36 36 H 1.08999 * 109.59901 * 294.86650 * 13 12 11 37 37 H 1.09005 * 109.70268 * 174.50654 * 13 12 11 38 38 H 0.96999 * 120.00635 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.58496 * 293.81560 * 23 14 13 40 40 H 1.09004 * 109.70084 * 173.46975 * 23 14 13 41 41 H 1.08998 * 109.49625 * 301.34235 * 24 11 10 42 42 H 1.09005 * 109.49322 * 61.40049 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3550 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 8 2.8850 1.3810 1.1667 7 7 3.1894 2.7032 1.5718 8 6 3.9568 2.9150 2.6595 9 8 4.3871 1.9707 3.2930 10 7 4.2469 4.1734 3.0447 11 6 5.0806 4.4037 4.2272 12 6 4.2043 4.3774 5.4816 13 6 5.0842 4.5836 6.7186 14 7 5.8566 5.8218 6.5482 15 6 5.8255 6.8008 7.5051 16 1 4.9587 6.9075 8.1405 17 6 6.9080 7.6560 7.6585 18 7 6.7498 8.8168 8.2584 19 14 8.5893 7.1596 7.0134 20 1 8.7661 7.6855 5.6360 21 1 9.6436 7.7201 7.8964 22 1 8.6948 5.6785 6.9951 23 6 6.6633 5.9893 5.3317 24 6 5.7659 5.7670 4.1104 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 0.0004 28 1 2.3165 1.3283 -2.1393 29 1 3.4877 2.3304 -1.2495 30 1 3.6514 0.5577 -1.2492 31 1 2.8457 3.4565 1.0665 32 1 3.9039 4.9267 2.5390 33 1 5.8369 3.6218 4.2961 34 1 3.4635 5.1750 5.4248 35 1 3.6982 3.4146 5.5518 36 1 5.7656 3.7399 6.8274 37 1 4.4570 4.6635 7.6065 38 1 7.5063 9.4144 8.3659 39 1 7.4736 5.2602 5.3274 40 1 7.0783 6.9968 5.3019 41 1 6.3713 5.7934 3.2044 42 1 5.0102 6.5514 4.0659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845635823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:13 Heat of formation + Delta-G solvation = 25.512935 kcal Electronic energy + Delta-G solvation = -22421.615260 eV Core-core repulsion = 19019.628463 eV Total energy + Delta-G solvation = -3401.986797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -39.97522 -38.49184 -37.46517 -34.77183 -34.45703 -32.54077 -31.53477 -30.41478 -30.22609 -29.38115 -24.93692 -23.70938 -22.92622 -22.03050 -21.18009 -20.33762 -19.66829 -18.63968 -18.02364 -16.71594 -16.09443 -15.70419 -15.41519 -14.89693 -14.76602 -14.14143 -14.12713 -14.01009 -13.78733 -13.68112 -13.08090 -12.90155 -12.67011 -12.39474 -12.25416 -11.97981 -11.76984 -11.39069 -11.38285 -10.96657 -10.80157 -10.53220 -10.26149 -10.22269 -10.08692 -9.99544 -9.75319 -9.45688 -9.09626 -8.69811 -8.62316 -6.97822 -5.94040 -3.29676 1.29735 1.94730 3.28166 3.32169 3.50403 3.54164 3.79542 4.25161 4.31509 4.44962 4.53973 4.67617 4.88099 4.97446 5.16564 5.22504 5.25798 5.35467 5.42024 5.45239 5.67779 5.69290 5.84818 6.06030 6.06182 6.10427 6.13517 6.16293 6.30364 6.43858 6.56648 6.61337 6.67475 6.69489 6.75207 6.87764 7.00171 7.96022 7.97338 8.34047 8.67498 8.95067 9.72960 10.10716 11.21952 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043467 B = 0.003030 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.008677 B = 9237.272506 C = 9472.685182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.078 0.922 5 C -0.173 4.173 6 O -0.119 6.119 7 N -0.619 5.619 8 C 0.719 3.281 9 O -0.571 6.571 10 N -0.731 5.731 11 C 0.172 3.828 12 C -0.143 4.143 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.258 4.258 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.129 3.871 24 C -0.140 4.140 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.393 0.607 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 -12.013 -20.259 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.028 3.972 4 H 0.096 0.904 5 C -0.231 4.231 6 O -0.122 6.122 7 N -0.325 5.325 8 C 0.419 3.581 9 O -0.446 6.446 10 N -0.389 5.389 11 C 0.068 3.932 12 C -0.183 4.183 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.386 4.386 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.552 5.552 19 Si 0.711 3.289 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.003 3.997 24 C -0.180 4.180 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.226 0.774 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.251 -12.951 -19.471 25.533 hybrid contribution 0.440 0.572 -1.188 1.390 sum -9.811 -12.379 -20.659 26.006 Atomic orbital electron populations 1.23979 0.95467 1.02605 0.98076 1.22616 0.95557 0.97188 1.01502 1.21669 0.92338 0.97107 0.86117 0.90431 1.22309 1.00492 1.03310 0.96973 1.90657 1.71568 1.04527 1.45469 1.46293 1.57597 0.97580 1.31040 1.15450 0.78868 0.84371 0.79402 1.90951 1.56736 1.41139 1.55750 1.45327 1.56609 1.04675 1.32240 1.20928 0.91790 0.98040 0.82420 1.22421 0.98993 1.01187 0.95745 1.20908 0.93263 0.88261 0.95162 1.44419 1.54101 1.16683 1.17810 1.18936 1.00772 1.06590 1.12351 0.89618 1.25287 0.97772 0.96430 0.98169 1.69835 1.30975 1.07934 1.46468 0.86977 0.85716 0.79215 0.76956 1.21636 1.23148 1.19405 1.21311 0.92697 1.00428 0.85270 1.22368 1.00222 0.95632 0.99761 0.88258 0.87342 0.86124 0.91162 0.91870 0.91225 0.76073 0.77375 0.89690 0.91837 0.92054 0.95579 0.91546 0.92785 0.95381 0.90465 0.92156 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 14.32 29.01 0.42 -0.56 16 2 C -0.15 -1.11 9.15 -36.03 -0.33 -1.44 16 3 C 0.09 0.69 3.22 -27.88 -0.09 0.60 16 4 H 0.08 0.49 7.59 -51.92 -0.39 0.09 16 5 C -0.17 -1.16 9.54 37.16 0.35 -0.80 16 6 O -0.12 -1.50 10.73 -29.62 -0.32 -1.82 16 7 N -0.62 -7.12 6.38 27.63 0.18 -6.94 16 8 C 0.72 10.91 8.68 -86.92 -0.75 10.16 16 9 O -0.57 -11.54 16.41 -12.86 -0.21 -11.75 16 10 N -0.73 -9.59 5.08 -58.64 -0.30 -9.89 16 11 C 0.17 2.79 2.42 -67.89 -0.16 2.62 16 12 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 13 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 14 N -0.61 -14.32 2.77 -172.32 -0.48 -14.80 16 15 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.71 13.97 55.49 0.78 -26.93 16 19 Si 0.88 22.24 24.35 -169.99 -4.14 18.10 16 20 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 21 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 22 H -0.27 -6.73 6.63 56.52 0.37 -6.36 16 23 C 0.13 2.76 4.20 -3.72 -0.02 2.74 16 24 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 25 H 0.10 0.50 7.83 -52.49 -0.41 0.09 16 26 H 0.11 0.51 8.06 -52.49 -0.42 0.08 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.40 2.93 8.44 -40.82 -0.34 2.59 16 32 H 0.39 3.80 8.62 -40.82 -0.35 3.45 16 33 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 39 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 40 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -34.90 341.73 -7.24 -42.14 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.75 Total: 2.27 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.15 Total: 4.47 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.18 Total: -58.56 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.53 Total: -13.57 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.90 -7.24 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845635823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.650 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds