Wall clock time and date at job start Fri Apr 10 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00198 * 2 1 4 4 H 1.08998 * 109.47306 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47467 * 120.00365 * 3 2 1 6 6 O 1.42905 * 109.47062 * 240.00070 * 3 2 1 7 7 N 1.41602 * 113.99812 * 154.99661 * 6 3 2 8 8 C 1.34777 * 119.99814 * 180.02562 * 7 6 3 9 9 O 1.21588 * 120.00212 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00154 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00231 * 179.97438 * 10 8 7 12 12 C 1.53349 * 109.40994 * 275.11647 * 11 10 8 13 13 C 1.53189 * 109.15350 * 178.67852 * 12 11 10 14 14 N 1.46931 * 108.89061 * 54.57922 * 13 12 11 15 15 C 1.36938 * 120.62972 * 126.29441 * 14 13 12 16 16 H 1.08005 * 120.00173 * 331.83979 * 15 14 13 17 17 C 1.38813 * 119.99936 * 151.83343 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.08512 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.08402 * 17 15 14 20 20 H 1.48500 * 109.46925 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46793 * 120.00276 * 19 17 15 22 22 H 1.48498 * 109.46814 * 240.00176 * 19 17 15 23 23 C 1.46927 * 118.74004 * 306.32424 * 14 13 12 24 24 C 1.53047 * 109.46223 * 154.99798 * 11 10 8 25 25 H 1.08005 * 119.99973 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.99965 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00181 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47355 * 59.99420 * 5 3 2 29 29 H 1.09003 * 109.47230 * 180.02562 * 5 3 2 30 30 H 1.09010 * 109.46795 * 299.99897 * 5 3 2 31 31 H 0.97000 * 120.00313 * 0.02562 * 7 6 3 32 32 H 0.97000 * 119.99973 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46233 * 35.02540 * 11 10 8 34 34 H 1.09001 * 109.68292 * 58.71495 * 12 11 10 35 35 H 1.08994 * 109.47524 * 298.52318 * 12 11 10 36 36 H 1.09000 * 109.58714 * 294.72587 * 13 12 11 37 37 H 1.09003 * 109.58688 * 174.43867 * 13 12 11 38 38 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58255 * 173.39566 * 23 14 13 40 40 H 1.09000 * 109.58150 * 293.67300 * 23 14 13 41 41 H 1.09000 * 109.49464 * 61.42034 * 24 11 10 42 42 H 1.08999 * 109.52117 * 301.33787 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 1.2491 6 8 2.8851 1.3807 -1.1668 7 7 3.1896 2.7029 -1.5720 8 6 3.9568 2.9146 -2.6597 9 8 4.3872 1.9702 -3.2932 10 7 4.2471 4.1730 -3.0451 11 6 5.0816 4.4030 -4.2270 12 6 6.5606 4.3376 -3.8271 13 6 7.4276 4.5460 -5.0727 14 7 7.0318 5.8026 -5.7231 15 6 7.9629 6.7669 -6.0030 16 1 8.8502 6.8540 -5.3933 17 6 7.7666 7.6323 -7.0704 18 7 6.8867 7.3371 -8.0037 19 14 8.7511 9.2159 -7.1822 20 1 9.6671 9.3125 -6.0174 21 1 9.5450 9.2175 -8.4372 22 1 7.8242 10.3761 -7.1813 23 6 5.6177 6.0053 -6.0669 24 6 4.7683 5.7822 -4.8117 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6514 0.5576 1.2492 29 1 3.4879 2.3303 1.2493 30 1 2.3165 1.3284 2.1392 31 1 2.8460 3.4563 -1.0668 32 1 3.9035 4.9264 -2.5399 33 1 4.8734 3.6364 -4.9733 34 1 6.7800 3.3634 -3.3900 35 1 6.7752 5.1200 -3.0993 36 1 7.2811 3.7153 -5.7631 37 1 8.4770 4.5994 -4.7827 38 1 6.7493 7.9420 -8.7494 39 1 5.4723 7.0225 -6.4306 40 1 5.3244 5.2953 -6.8402 41 1 4.9997 6.5510 -4.0745 42 1 3.7115 5.8354 -5.0735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845635824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:16 Heat of formation + Delta-G solvation = 19.315443 kcal Electronic energy + Delta-G solvation = -22332.506604 eV Core-core repulsion = 18930.251064 eV Total energy + Delta-G solvation = -3402.255540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -39.85320 -38.37528 -37.18382 -34.69282 -34.31639 -32.49657 -31.37539 -30.19428 -29.86478 -28.96339 -24.96398 -23.67699 -22.35525 -22.05106 -21.03804 -20.24541 -19.41488 -18.53797 -17.88812 -16.64477 -16.03555 -15.35548 -15.30099 -14.80693 -14.67570 -14.16767 -13.96971 -13.68852 -13.60741 -13.50483 -12.96576 -12.66335 -12.61458 -12.32631 -12.20593 -11.45006 -11.34798 -11.32101 -11.11004 -10.82931 -10.72222 -10.46330 -10.24389 -10.09239 -10.01516 -9.96301 -9.73608 -9.52629 -9.00756 -8.60577 -8.43273 -6.66642 -5.78286 -3.20256 1.35844 2.00264 3.37519 3.38283 3.45676 3.47951 3.90244 4.31359 4.37258 4.49006 4.50679 4.72570 4.91615 5.26404 5.30447 5.35403 5.41818 5.49304 5.52260 5.62303 5.72635 5.91403 6.09398 6.10337 6.17106 6.30512 6.34723 6.44425 6.59041 6.62441 6.73621 6.83925 6.88012 7.00710 7.08376 7.33764 7.63707 7.81193 8.07159 8.46172 8.77666 9.22298 9.85545 10.42726 11.30728 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.048329 B = 0.002808 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.227331 B = 9968.894443 C =10058.397346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C 0.086 3.914 4 H 0.077 0.923 5 C -0.173 4.173 6 O -0.119 6.119 7 N -0.620 5.620 8 C 0.717 3.283 9 O -0.571 6.571 10 N -0.730 5.730 11 C 0.171 3.829 12 C -0.141 4.141 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.391 0.609 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -8.081 17.966 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.095 0.905 5 C -0.231 4.231 6 O -0.123 6.123 7 N -0.326 5.326 8 C 0.418 3.582 9 O -0.446 6.446 10 N -0.388 5.388 11 C 0.068 3.932 12 C -0.181 4.181 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.047 3.953 24 C -0.186 4.186 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.224 0.776 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.346 -9.073 17.110 22.967 hybrid contribution -0.101 1.515 0.727 1.683 sum -12.447 -7.559 17.837 23.026 Atomic orbital electron populations 1.23967 0.95473 1.02565 0.98243 1.22623 0.95555 0.97231 1.01353 1.21660 0.92343 0.97046 0.86191 0.90487 1.22308 1.00483 1.03358 0.96935 1.90657 1.71544 1.04673 1.45393 1.46322 1.57783 0.97461 1.31039 1.15494 0.78724 0.84490 0.79499 1.90949 1.56930 1.41161 1.55558 1.45420 1.56226 1.04484 1.32678 1.21055 0.89134 0.98482 0.84503 1.22468 0.94997 1.00555 1.00093 1.20884 0.96333 0.89186 0.91594 1.44112 1.03445 1.14393 1.69637 1.19236 1.02440 1.08059 1.08250 0.91596 1.25060 0.99221 1.00536 0.94942 1.70035 1.37716 1.36176 1.10855 0.86229 0.79421 0.83688 0.77479 1.20279 1.21744 1.21602 1.20753 0.82029 1.02344 0.90137 1.22556 1.00086 0.94458 1.01461 0.87366 0.88289 0.86124 0.91209 0.91844 0.91206 0.76146 0.77559 0.89822 0.92507 0.92366 0.96057 0.92556 0.93661 0.88993 0.95964 0.92135 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 14.32 29.02 0.42 -0.62 16 2 C -0.15 -1.16 9.15 -36.03 -0.33 -1.49 16 3 C 0.09 0.73 3.22 -27.89 -0.09 0.64 16 4 H 0.08 0.52 7.58 -51.93 -0.39 0.12 16 5 C -0.17 -1.24 9.54 37.16 0.35 -0.89 16 6 O -0.12 -1.58 10.73 -29.62 -0.32 -1.90 16 7 N -0.62 -7.59 6.38 27.63 0.18 -7.41 16 8 C 0.72 11.58 8.68 -86.92 -0.75 10.82 16 9 O -0.57 -12.14 16.41 -12.86 -0.21 -12.35 16 10 N -0.73 -10.37 5.08 -58.48 -0.30 -10.67 16 11 C 0.17 3.02 2.42 -67.73 -0.16 2.85 16 12 C -0.14 -2.61 5.68 -26.45 -0.15 -2.76 16 13 C 0.15 3.20 6.50 -3.71 -0.02 3.17 16 14 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 15 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 16 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 19 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 24 C -0.15 -2.62 5.55 -26.61 -0.15 -2.77 16 25 H 0.11 0.53 8.06 -52.48 -0.42 0.11 16 26 H 0.10 0.52 7.83 -52.49 -0.41 0.11 16 27 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.40 3.20 8.44 -40.82 -0.34 2.86 16 32 H 0.39 4.17 8.62 -40.82 -0.35 3.82 16 33 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -33.87 348.20 -8.29 -42.15 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.82 Total: 3.24 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.14 Total: 5.97 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.02 Total: -58.83 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.53 Total: -14.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.87 -8.29 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845635824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.470 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds