Wall clock time and date at job start Fri Apr 10 2020 17:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00198 * 2 1 4 4 H 1.08998 * 109.47306 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47467 * 120.00365 * 3 2 1 6 6 O 1.42905 * 109.47062 * 240.00070 * 3 2 1 7 7 N 1.41602 * 113.99812 * 154.99661 * 6 3 2 8 8 C 1.34777 * 119.99814 * 180.02562 * 7 6 3 9 9 O 1.21588 * 120.00212 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00154 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00231 * 179.97438 * 10 8 7 12 12 C 1.53349 * 109.40994 * 275.11647 * 11 10 8 13 13 C 1.53189 * 109.15350 * 178.67852 * 12 11 10 14 14 N 1.46931 * 108.89061 * 54.57922 * 13 12 11 15 15 C 1.36938 * 120.62972 * 126.29441 * 14 13 12 16 16 H 1.08005 * 120.00173 * 331.83979 * 15 14 13 17 17 C 1.38813 * 119.99936 * 151.83343 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.08512 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.08402 * 17 15 14 20 20 H 1.48500 * 109.46925 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46793 * 120.00276 * 19 17 15 22 22 H 1.48498 * 109.46814 * 240.00176 * 19 17 15 23 23 C 1.46927 * 118.74004 * 306.32424 * 14 13 12 24 24 C 1.53047 * 109.46223 * 154.99798 * 11 10 8 25 25 H 1.08005 * 119.99973 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.99965 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00181 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47355 * 59.99420 * 5 3 2 29 29 H 1.09003 * 109.47230 * 180.02562 * 5 3 2 30 30 H 1.09010 * 109.46795 * 299.99897 * 5 3 2 31 31 H 0.97000 * 120.00313 * 0.02562 * 7 6 3 32 32 H 0.97000 * 119.99973 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46233 * 35.02540 * 11 10 8 34 34 H 1.09001 * 109.68292 * 58.71495 * 12 11 10 35 35 H 1.08994 * 109.47524 * 298.52318 * 12 11 10 36 36 H 1.09000 * 109.58714 * 294.72587 * 13 12 11 37 37 H 1.09003 * 109.58688 * 174.43867 * 13 12 11 38 38 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58255 * 173.39566 * 23 14 13 40 40 H 1.09000 * 109.58150 * 293.67300 * 23 14 13 41 41 H 1.09000 * 109.49464 * 61.42034 * 24 11 10 42 42 H 1.08999 * 109.52117 * 301.33787 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 1.2491 6 8 2.8851 1.3807 -1.1668 7 7 3.1896 2.7029 -1.5720 8 6 3.9568 2.9146 -2.6597 9 8 4.3872 1.9702 -3.2932 10 7 4.2471 4.1730 -3.0451 11 6 5.0816 4.4030 -4.2270 12 6 6.5606 4.3376 -3.8271 13 6 7.4276 4.5460 -5.0727 14 7 7.0318 5.8026 -5.7231 15 6 7.9629 6.7669 -6.0030 16 1 8.8502 6.8540 -5.3933 17 6 7.7666 7.6323 -7.0704 18 7 6.8867 7.3371 -8.0037 19 14 8.7511 9.2159 -7.1822 20 1 9.6671 9.3125 -6.0174 21 1 9.5450 9.2175 -8.4372 22 1 7.8242 10.3761 -7.1813 23 6 5.6177 6.0053 -6.0669 24 6 4.7683 5.7822 -4.8117 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6514 0.5576 1.2492 29 1 3.4879 2.3303 1.2493 30 1 2.3165 1.3284 2.1392 31 1 2.8460 3.4563 -1.0668 32 1 3.9035 4.9264 -2.5399 33 1 4.8734 3.6364 -4.9733 34 1 6.7800 3.3634 -3.3900 35 1 6.7752 5.1200 -3.0993 36 1 7.2811 3.7153 -5.7631 37 1 8.4770 4.5994 -4.7827 38 1 6.7493 7.9420 -8.7494 39 1 5.4723 7.0225 -6.4306 40 1 5.3244 5.2953 -6.8402 41 1 4.9997 6.5510 -4.0745 42 1 3.7115 5.8354 -5.0735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845635824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:15 Heat of formation + Delta-G solvation = -3.350975 kcal Electronic energy + Delta-G solvation = -22333.489493 eV Core-core repulsion = 18930.251064 eV Total energy + Delta-G solvation = -3403.238430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12296 -39.42850 -38.64709 -35.97990 -35.43882 -34.08519 -32.72874 -31.64644 -30.97773 -30.34192 -26.83851 -24.40376 -23.95958 -23.66370 -22.24066 -21.15744 -20.90667 -19.53376 -19.16759 -18.43426 -17.07963 -16.84089 -16.43059 -16.27847 -15.77155 -15.42909 -15.31820 -15.15831 -14.78828 -14.63120 -14.43536 -14.24644 -14.02921 -13.19680 -13.15276 -13.00250 -12.82834 -12.60979 -12.50078 -12.22408 -12.09383 -11.97188 -11.91922 -11.84257 -11.55044 -11.41895 -11.23979 -10.57283 -10.54661 -10.23635 -9.72714 -8.68839 -7.85881 -5.31473 0.47320 1.33674 1.49426 1.51334 1.62102 2.11640 2.53838 2.81052 3.30497 3.61297 3.69434 3.74638 3.91625 3.93459 4.07569 4.12380 4.36625 4.40801 4.49387 4.67890 4.73919 4.77050 4.81992 4.87555 4.97607 5.02141 5.09941 5.18479 5.18504 5.32009 5.48941 5.54981 5.58223 5.59742 5.65961 5.68055 5.76963 6.03727 6.41397 7.03257 7.16717 7.59718 7.86052 8.39156 9.21506 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.048329 B = 0.002808 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.227331 B = 9968.894443 C =10058.397346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.175 4.175 3 C 0.081 3.919 4 H 0.100 0.900 5 C -0.170 4.170 6 O -0.152 6.152 7 N -0.600 5.600 8 C 0.717 3.283 9 O -0.627 6.627 10 N -0.712 5.712 11 C 0.183 3.817 12 C -0.125 4.125 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.068 0.932 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.177 3.823 24 C -0.126 4.126 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.422 0.578 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.065 0.935 40 H -0.006 1.006 41 H 0.075 0.925 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 -7.157 20.407 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.194 4.194 3 C 0.024 3.976 4 H 0.118 0.882 5 C -0.227 4.227 6 O -0.156 6.156 7 N -0.306 5.306 8 C 0.417 3.583 9 O -0.507 6.507 10 N -0.371 5.371 11 C 0.078 3.922 12 C -0.165 4.165 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.223 1.223 22 H -0.213 1.213 23 C 0.051 3.949 24 C -0.166 4.166 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.265 0.735 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.013 0.987 41 H 0.094 0.906 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.647 -8.121 19.643 25.260 hybrid contribution 0.223 1.124 0.006 1.146 sum -13.425 -6.997 19.649 24.805 Atomic orbital electron populations 1.24216 0.94924 1.03859 0.95560 1.22648 0.96206 0.96801 1.03784 1.21955 0.92487 0.98186 0.84990 0.88245 1.22286 1.00391 1.02818 0.97212 1.90661 1.72652 1.04805 1.47462 1.45921 1.56387 0.98416 1.29923 1.15587 0.78773 0.84049 0.79904 1.90920 1.59181 1.42954 1.57606 1.44909 1.55503 1.04914 1.31782 1.20640 0.89083 0.97313 0.85141 1.22260 0.94970 1.00897 0.98419 1.20963 0.97282 0.87510 0.92457 1.44370 1.03890 1.15102 1.69894 1.19553 1.02887 1.08548 1.08117 0.91462 1.25825 1.00585 1.03493 0.94694 1.70191 1.39434 1.37166 1.11437 0.85185 0.78049 0.79738 0.77309 1.19078 1.22274 1.21341 1.20590 0.82369 0.99894 0.92038 1.22262 1.00302 0.94939 0.99074 0.86090 0.86968 0.86841 0.92621 0.91678 0.89162 0.73484 0.74922 0.92537 0.92459 0.91111 0.97607 0.92390 0.94021 0.91660 0.98746 0.90633 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 14.32 67.79 0.97 -0.52 16 2 C -0.18 -2.48 9.15 25.65 0.23 -2.24 16 3 C 0.08 1.22 3.22 29.85 0.10 1.32 16 4 H 0.10 1.01 7.58 -2.39 -0.02 1.00 16 5 C -0.17 -2.12 9.54 71.98 0.69 -1.43 16 6 O -0.15 -3.83 10.73 -21.44 -0.23 -4.06 16 7 N -0.60 -13.42 6.38 -184.75 -1.18 -14.60 16 8 C 0.72 22.12 8.68 179.06 1.55 23.67 16 9 O -0.63 -26.73 16.41 13.36 0.22 -26.51 16 10 N -0.71 -18.60 5.08 -457.18 -2.32 -20.92 16 11 C 0.18 6.25 2.42 45.12 0.11 6.36 16 12 C -0.13 -4.53 5.68 30.77 0.17 -4.35 16 13 C 0.14 6.33 6.50 86.36 0.56 6.89 16 14 N -0.61 -30.73 2.99 -699.08 -2.09 -32.83 16 15 C -0.26 -14.28 9.58 84.03 0.81 -13.48 16 16 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.94 -55.11 11.20 21.65 0.24 -54.87 16 19 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 C 0.18 8.40 5.30 86.36 0.46 8.86 16 24 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 25 H 0.12 0.89 8.06 -2.91 -0.02 0.86 16 26 H 0.11 0.82 7.83 -2.91 -0.02 0.80 16 27 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.42 5.39 8.44 -92.71 -0.78 4.60 16 32 H 0.41 7.29 8.62 -92.71 -0.80 6.49 16 33 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.07 3.44 6.06 -2.39 -0.01 3.43 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -75.21 348.20 2.34 -72.87 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.57 Total: 16.06 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 6.24 Total: 18.50 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -5.35 Total: -123.22 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.01 Total: -30.57 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -75.21 2.34 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845635824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.520 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds