Wall clock time and date at job start Fri Apr 10 2020 17:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46928 * 2 1 4 4 C 1.53004 * 109.46847 * 240.00178 * 2 1 3 5 5 N 1.46901 * 109.47044 * 120.00231 * 2 1 3 6 6 C 1.48303 * 111.10764 * 323.72470 * 5 2 1 7 7 C 1.53940 * 86.18040 * 137.54373 * 6 5 2 8 8 C 1.47954 * 110.99812 * 62.97988 * 5 2 1 9 9 H 1.09007 * 113.76136 * 107.99457 * 8 5 2 10 10 C 1.50697 * 113.76419 * 336.73008 * 8 5 2 11 11 O 1.21280 * 119.99552 * 61.62788 * 10 8 5 12 12 N 1.34774 * 120.00424 * 241.63232 * 10 8 5 13 13 C 1.46502 * 120.00055 * 180.02562 * 12 10 8 14 14 C 1.50705 * 109.47077 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99767 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99738 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99925 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99677 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00244 * 179.97438 * 17 16 14 20 20 N 1.31403 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47152 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47522 * 300.00013 * 21 19 17 24 24 H 1.48505 * 109.47371 * 60.00354 * 21 19 17 25 25 H 1.09006 * 109.46902 * 340.47222 * 1 2 3 26 26 H 1.08998 * 109.47243 * 100.47158 * 1 2 3 27 27 H 1.09000 * 109.47029 * 220.47444 * 1 2 3 28 28 H 1.09007 * 109.46813 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47498 * 300.00271 * 3 2 1 30 30 H 1.09004 * 109.47307 * 60.00157 * 3 2 1 31 31 H 1.09000 * 109.46724 * 265.53215 * 4 2 1 32 32 H 1.08997 * 109.46940 * 25.53725 * 4 2 1 33 33 H 1.08999 * 109.46447 * 145.53628 * 4 2 1 34 34 H 1.09006 * 113.75980 * 23.23007 * 6 5 2 35 35 H 1.08996 * 113.86306 * 251.87766 * 6 5 2 36 36 H 1.08994 * 113.73230 * 221.91868 * 7 6 5 37 37 H 1.09003 * 113.82479 * 90.65106 * 7 6 5 38 38 H 0.96996 * 120.00020 * 359.97438 * 12 10 8 39 39 H 1.08991 * 109.47594 * 59.99389 * 13 12 10 40 40 H 1.09000 * 109.46628 * 299.99503 * 13 12 10 41 41 H 0.96997 * 120.00313 * 359.97438 * 16 14 13 42 42 H 0.97004 * 120.00139 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 1.1461 -0.4213 2.3668 7 6 1.2907 -1.9189 2.6926 8 6 1.6048 -2.1127 1.1981 9 1 2.4218 -2.8088 1.0078 10 6 0.3881 -2.3891 0.3530 11 8 0.4175 -2.1753 -0.8404 12 7 -0.7327 -2.8739 0.9233 13 6 -1.9153 -3.1431 0.1016 14 6 -3.0227 -3.6754 0.9741 15 8 -2.8418 -3.8164 2.1652 16 7 -4.2141 -3.9946 0.4310 17 6 -5.2218 -4.4783 1.2248 18 1 -5.0607 -4.6039 2.2854 19 6 -6.4503 -4.8070 0.6650 20 7 -6.6465 -4.6537 -0.6252 21 14 -7.8230 -5.4667 1.7466 22 1 -9.0220 -5.7390 0.9138 23 1 -7.3782 -6.7243 2.3991 24 1 -8.1601 -4.4618 2.7867 25 1 -0.3633 0.9686 0.3435 26 1 -0.3633 -0.1868 -1.0105 27 1 -0.3633 -0.7817 0.6671 28 1 3.1301 1.4424 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2365 -1.7665 -1.0106 32 1 1.2868 -0.6633 -2.0351 33 1 2.9599 -0.2476 -1.5921 34 1 0.1319 -0.1265 2.0972 35 1 1.5961 0.2356 3.1111 36 1 0.3609 -2.3905 3.0103 37 1 2.1294 -2.1474 3.3504 38 1 -0.7561 -3.0452 1.8778 39 1 -1.6674 -3.8813 -0.6611 40 1 -2.2418 -2.2205 -0.3783 41 1 -4.3589 -3.8815 -0.5214 42 1 -7.5040 -4.8835 -1.0161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897751850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:39 Heat of formation + Delta-G solvation = 9.069483 kcal Electronic energy + Delta-G solvation = -23619.770138 eV Core-core repulsion = 20217.070300 eV Total energy + Delta-G solvation = -3402.699838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18539 -38.69778 -37.70633 -35.47006 -34.31325 -33.58077 -31.43259 -28.58888 -28.02643 -27.37179 -27.09364 -25.79237 -24.35890 -21.70697 -20.14187 -19.76289 -18.87254 -18.08100 -17.11395 -16.24360 -16.08177 -15.80677 -15.25718 -15.03010 -14.59817 -14.54834 -14.25881 -13.86727 -13.73022 -13.24693 -12.81229 -12.61449 -12.46734 -12.24199 -11.96974 -11.70194 -11.67408 -11.51000 -11.22770 -11.16031 -11.13197 -10.88512 -10.64908 -10.54132 -10.38648 -10.35095 -9.67079 -9.48704 -8.82636 -8.71341 -8.63048 -8.14996 -6.55789 -3.98096 2.66309 3.10482 3.17190 3.19400 3.26238 3.67112 3.69028 4.07226 4.25833 4.64522 4.78304 4.81184 4.86115 4.96373 5.11866 5.12761 5.26118 5.39645 5.49628 5.58033 5.63705 5.68464 5.73904 5.80028 5.83783 5.88161 5.92833 5.98140 6.01865 6.17107 6.19755 6.26238 6.39459 6.58750 6.75488 6.95808 7.41564 7.69600 7.86940 8.33989 8.40671 8.99913 9.34093 9.81748 10.60907 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.003694 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.903281 B = 7578.512013 C = 7886.394908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 C -0.127 4.127 4 C -0.114 4.114 5 N -0.447 5.447 6 C -0.016 4.016 7 C -0.145 4.145 8 C 0.010 3.990 9 H 0.126 0.874 10 C 0.512 3.488 11 O -0.534 6.534 12 N -0.709 5.709 13 C 0.109 3.891 14 C 0.426 3.574 15 O -0.598 6.598 16 N -0.547 5.547 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.283 1.283 23 H -0.272 1.272 24 H -0.272 1.272 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.410 0.590 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 7.717 1.518 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 C -0.185 4.185 4 C -0.171 4.171 5 N -0.170 5.170 6 C -0.144 4.144 7 C -0.183 4.183 8 C -0.102 4.102 9 H 0.144 0.856 10 C 0.299 3.701 11 O -0.412 6.412 12 N -0.365 5.365 13 C -0.019 4.019 14 C 0.212 3.788 15 O -0.485 6.485 16 N -0.182 5.182 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.176 4.176 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.208 1.208 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.250 0.750 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.229 0.771 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.992 7.908 1.327 17.001 hybrid contribution -1.810 -0.453 0.147 1.872 sum 13.181 7.455 1.474 15.215 Atomic orbital electron populations 1.23295 0.96160 1.01117 1.03683 1.21557 0.93385 0.95197 0.92185 1.21777 1.01299 0.94149 1.01247 1.22148 0.98933 1.00605 0.95382 1.69061 1.44128 1.00377 1.03420 1.24275 0.98264 0.97440 0.94463 1.23456 1.03338 0.96398 0.95065 1.23363 0.95968 0.95213 0.95669 0.85603 1.20155 0.84154 0.76780 0.89058 1.90843 1.83170 1.51799 1.15352 1.46058 1.11824 1.65231 1.13424 1.20955 0.85636 1.01583 0.93735 1.19733 0.84409 0.85945 0.88728 1.90496 1.81882 1.60369 1.15728 1.41787 1.10099 1.55158 1.11141 1.19686 0.90444 1.39694 0.93808 0.87703 1.25325 0.98826 0.97232 0.96226 1.69601 1.25824 1.47400 1.10588 0.85872 0.79380 0.79469 0.79253 1.20820 1.19736 1.19744 0.93695 0.90444 0.90908 0.92145 0.92336 0.93107 0.90718 0.91756 0.95272 0.89629 0.89018 0.90032 0.88091 0.75001 0.89819 0.90002 0.77058 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 6.14 37.16 0.23 -2.28 16 2 C 0.07 0.83 0.72 -131.60 -0.09 0.74 16 3 C -0.13 -1.38 8.23 37.16 0.31 -1.07 16 4 C -0.11 -1.52 7.56 37.16 0.28 -1.23 16 5 N -0.45 -5.32 6.00 -215.38 -1.29 -6.61 16 6 C -0.02 -0.17 7.35 -2.57 -0.02 -0.19 16 7 C -0.14 -1.47 7.74 -25.79 -0.20 -1.67 16 8 C 0.01 0.12 3.64 -67.81 -0.25 -0.13 16 9 H 0.13 1.37 8.14 -51.92 -0.42 0.95 16 10 C 0.51 7.40 4.14 -10.99 -0.05 7.35 16 11 O -0.53 -8.67 9.60 5.56 0.05 -8.61 16 12 N -0.71 -11.02 4.80 -61.63 -0.30 -11.32 16 13 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 14 C 0.43 9.48 7.85 -10.99 -0.09 9.39 16 15 O -0.60 -14.85 15.24 5.54 0.08 -14.76 16 16 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 17 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 18 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 19 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 20 N -0.89 -23.56 13.05 55.50 0.72 -22.83 16 21 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.04 0.57 7.64 -51.93 -0.40 0.17 16 26 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 27 H 0.07 1.05 2.72 -52.24 -0.14 0.90 16 28 H 0.06 0.63 8.12 -51.92 -0.42 0.21 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.52 8.02 -51.93 -0.42 0.11 16 31 H 0.07 1.07 5.15 -51.93 -0.27 0.80 16 32 H 0.06 0.93 6.54 -51.93 -0.34 0.59 16 33 H 0.03 0.35 7.76 -51.93 -0.40 -0.05 16 34 H 0.09 1.02 5.23 -51.93 -0.27 0.74 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.88 6.00 -51.93 -0.31 0.57 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.41 6.39 5.16 -40.82 -0.21 6.18 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 42 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -28.90 320.45 -7.01 -35.91 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -5.88 Total: 16.48 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.15 Total: 5.03 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.92 Total: -54.10 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.14 Total: -23.38 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.90 -7.01 -35.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897751850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.976 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds