Wall clock time and date at job start Fri Apr 10 2020 17:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46928 * 2 1 4 4 C 1.53004 * 109.46847 * 240.00178 * 2 1 3 5 5 N 1.46901 * 109.47044 * 120.00231 * 2 1 3 6 6 C 1.48303 * 111.10764 * 323.72470 * 5 2 1 7 7 C 1.53940 * 86.18040 * 137.54373 * 6 5 2 8 8 C 1.47954 * 110.99812 * 62.97988 * 5 2 1 9 9 H 1.09007 * 113.76136 * 107.99457 * 8 5 2 10 10 C 1.50697 * 113.76419 * 336.73008 * 8 5 2 11 11 O 1.21280 * 119.99552 * 61.62788 * 10 8 5 12 12 N 1.34774 * 120.00424 * 241.63232 * 10 8 5 13 13 C 1.46502 * 120.00055 * 180.02562 * 12 10 8 14 14 C 1.50705 * 109.47077 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99767 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99738 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99925 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99677 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00244 * 179.97438 * 17 16 14 20 20 N 1.31403 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47152 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47522 * 300.00013 * 21 19 17 24 24 H 1.48505 * 109.47371 * 60.00354 * 21 19 17 25 25 H 1.09006 * 109.46902 * 340.47222 * 1 2 3 26 26 H 1.08998 * 109.47243 * 100.47158 * 1 2 3 27 27 H 1.09000 * 109.47029 * 220.47444 * 1 2 3 28 28 H 1.09007 * 109.46813 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47498 * 300.00271 * 3 2 1 30 30 H 1.09004 * 109.47307 * 60.00157 * 3 2 1 31 31 H 1.09000 * 109.46724 * 265.53215 * 4 2 1 32 32 H 1.08997 * 109.46940 * 25.53725 * 4 2 1 33 33 H 1.08999 * 109.46447 * 145.53628 * 4 2 1 34 34 H 1.09006 * 113.75980 * 23.23007 * 6 5 2 35 35 H 1.08996 * 113.86306 * 251.87766 * 6 5 2 36 36 H 1.08994 * 113.73230 * 221.91868 * 7 6 5 37 37 H 1.09003 * 113.82479 * 90.65106 * 7 6 5 38 38 H 0.96996 * 120.00020 * 359.97438 * 12 10 8 39 39 H 1.08991 * 109.47594 * 59.99389 * 13 12 10 40 40 H 1.09000 * 109.46628 * 299.99503 * 13 12 10 41 41 H 0.96997 * 120.00313 * 359.97438 * 16 14 13 42 42 H 0.97004 * 120.00139 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 1.1461 -0.4213 2.3668 7 6 1.2907 -1.9189 2.6926 8 6 1.6048 -2.1127 1.1981 9 1 2.4218 -2.8088 1.0078 10 6 0.3881 -2.3891 0.3530 11 8 0.4175 -2.1753 -0.8404 12 7 -0.7327 -2.8739 0.9233 13 6 -1.9153 -3.1431 0.1016 14 6 -3.0227 -3.6754 0.9741 15 8 -2.8418 -3.8164 2.1652 16 7 -4.2141 -3.9946 0.4310 17 6 -5.2218 -4.4783 1.2248 18 1 -5.0607 -4.6039 2.2854 19 6 -6.4503 -4.8070 0.6650 20 7 -6.6465 -4.6537 -0.6252 21 14 -7.8230 -5.4667 1.7466 22 1 -9.0220 -5.7390 0.9138 23 1 -7.3782 -6.7243 2.3991 24 1 -8.1601 -4.4618 2.7867 25 1 -0.3633 0.9686 0.3435 26 1 -0.3633 -0.1868 -1.0105 27 1 -0.3633 -0.7817 0.6671 28 1 3.1301 1.4424 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2365 -1.7665 -1.0106 32 1 1.2868 -0.6633 -2.0351 33 1 2.9599 -0.2476 -1.5921 34 1 0.1319 -0.1265 2.0972 35 1 1.5961 0.2356 3.1111 36 1 0.3609 -2.3905 3.0103 37 1 2.1294 -2.1474 3.3504 38 1 -0.7561 -3.0452 1.8778 39 1 -1.6674 -3.8813 -0.6611 40 1 -2.2418 -2.2205 -0.3783 41 1 -4.3589 -3.8815 -0.5214 42 1 -7.5040 -4.8835 -1.0161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897751850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:39 Heat of formation + Delta-G solvation = -13.040505 kcal Electronic energy + Delta-G solvation = -23620.728899 eV Core-core repulsion = 20217.070300 eV Total energy + Delta-G solvation = -3403.658599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.22581 -40.37560 -38.99317 -36.63064 -36.03984 -34.95058 -33.38473 -29.92336 -29.11351 -28.32414 -28.12553 -27.11194 -25.97854 -22.76549 -21.46677 -21.11945 -20.28306 -19.84955 -18.22438 -17.61577 -17.21219 -17.14354 -16.72380 -16.42223 -16.08368 -15.90089 -15.62925 -15.33781 -14.93301 -14.44574 -14.02504 -13.91747 -13.67268 -13.54813 -13.36494 -13.22729 -12.90548 -12.71971 -12.54273 -12.47727 -12.15098 -12.14472 -12.07186 -11.92467 -11.59234 -11.57073 -11.36986 -10.61457 -10.53118 -10.15767 -10.07017 -9.69190 -8.52131 -6.02484 1.37101 1.42249 1.51033 1.52892 1.89905 1.95786 2.30181 2.75081 3.10338 3.15171 3.38143 3.62714 3.81600 3.86856 3.96979 4.17868 4.20826 4.34736 4.39002 4.41407 4.48286 4.56836 4.58872 4.76940 4.81330 4.86423 4.88803 5.02209 5.10795 5.12031 5.18197 5.24367 5.31971 5.37058 5.41395 5.67017 5.90532 5.99321 6.43426 6.50274 7.02233 7.14356 7.43015 7.92872 8.64455 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.003694 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.903281 B = 7578.512013 C = 7886.394908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 C -0.123 4.123 4 C -0.108 4.108 5 N -0.444 5.444 6 C -0.017 4.017 7 C -0.134 4.134 8 C 0.007 3.993 9 H 0.140 0.860 10 C 0.514 3.486 11 O -0.552 6.552 12 N -0.710 5.710 13 C 0.123 3.877 14 C 0.432 3.568 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.996 3.004 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.411 0.589 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.398 0.602 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.227 8.143 2.303 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 C -0.181 4.181 4 C -0.165 4.165 5 N -0.167 5.167 6 C -0.146 4.146 7 C -0.172 4.172 8 C -0.105 4.105 9 H 0.158 0.842 10 C 0.302 3.698 11 O -0.431 6.431 12 N -0.367 5.367 13 C -0.004 4.004 14 C 0.219 3.781 15 O -0.511 6.511 16 N -0.194 5.194 17 C -0.468 4.468 18 H 0.105 0.895 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.819 3.181 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.194 1.194 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.251 0.749 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.232 0.768 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.877 8.346 2.103 18.060 hybrid contribution -2.008 -0.552 -0.113 2.085 sum 13.870 7.794 1.990 16.034 Atomic orbital electron populations 1.23250 0.97213 1.01175 1.02228 1.21573 0.92491 0.96286 0.92156 1.21744 1.01615 0.92905 1.01789 1.22045 0.98874 1.00198 0.95398 1.69102 1.44082 1.00116 1.03382 1.24325 0.97589 0.98335 0.94323 1.23472 1.03919 0.95681 0.94079 1.23421 0.94895 0.95707 0.96460 0.84217 1.20638 0.84304 0.75754 0.89081 1.90852 1.83488 1.52351 1.16388 1.46069 1.11566 1.65815 1.13241 1.20729 0.84842 1.01831 0.93042 1.20442 0.84632 0.84242 0.88810 1.90472 1.82460 1.60958 1.17206 1.41842 1.10536 1.55955 1.11103 1.19709 0.91935 1.41643 0.93485 0.89508 1.26112 1.00479 0.96920 0.97495 1.69670 1.26554 1.47711 1.11695 0.84945 0.76700 0.78767 0.77700 1.19691 1.19454 1.19445 0.92972 0.92352 0.91682 0.91554 0.91957 0.92472 0.91786 0.93433 0.94169 0.90883 0.87137 0.90702 0.85707 0.74880 0.88932 0.89199 0.76798 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 6.14 71.98 0.44 -4.36 16 2 C 0.06 1.53 0.72 3.53 0.00 1.53 16 3 C -0.12 -2.42 8.23 71.98 0.59 -1.83 16 4 C -0.11 -2.79 7.56 71.98 0.54 -2.24 16 5 N -0.44 -9.62 6.00 -835.32 -5.01 -14.63 16 6 C -0.02 -0.34 7.35 86.34 0.63 0.30 16 7 C -0.13 -2.42 7.74 31.24 0.24 -2.17 16 8 C 0.01 0.16 3.64 44.27 0.16 0.32 16 9 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 10 C 0.51 14.42 4.14 87.66 0.36 14.79 16 11 O -0.55 -17.72 9.60 -3.03 -0.03 -17.75 16 12 N -0.71 -21.69 4.80 -467.27 -2.24 -23.93 16 13 C 0.12 4.31 6.15 85.63 0.53 4.84 16 14 C 0.43 19.37 7.85 87.66 0.69 20.06 16 15 O -0.62 -31.22 15.24 -3.08 -0.05 -31.27 16 16 N -0.56 -27.58 5.29 -306.98 -1.62 -29.20 16 17 C -0.34 -18.38 9.68 84.04 0.81 -17.57 16 18 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 19 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 20 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 21 Si 1.00 41.22 29.55 68.60 2.03 43.25 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H 0.05 1.27 7.64 -2.38 -0.02 1.25 16 26 H 0.06 1.76 6.34 -2.39 -0.02 1.75 16 27 H 0.07 1.83 2.72 -2.68 -0.01 1.82 16 28 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.05 8.02 -2.38 -0.02 1.03 16 31 H 0.06 1.78 5.15 -2.39 -0.01 1.77 16 32 H 0.05 1.37 6.54 -2.39 -0.02 1.35 16 33 H 0.04 0.92 7.76 -2.39 -0.02 0.90 16 34 H 0.07 1.63 5.23 -2.38 -0.01 1.62 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.49 6.00 -2.39 -0.01 1.48 16 37 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.41 12.58 5.16 -92.71 -0.48 12.10 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 42 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -61.25 320.45 -1.32 -62.57 By element: Atomic # 1 Polarization: 45.43 SS G_CDS: -0.15 Total: 45.28 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.48 Total: 13.65 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -8.60 Total: -115.72 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.08 Total: -49.02 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -61.25 -1.32 -62.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897751850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.526 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds