Wall clock time and date at job start Fri Apr 10 2020 17:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.92180 * 2 1 4 4 C 1.54912 * 111.00332 * 236.09989 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64645 * 203.86243 * 5 4 2 7 7 O 1.21345 * 120.00306 * 0.02562 * 6 5 4 8 8 C 1.49452 * 119.99821 * 179.97438 * 6 5 4 9 9 O 1.21358 * 120.00100 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00413 * 179.97438 * 8 6 5 11 11 C 1.46491 * 120.00357 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47029 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47147 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47146 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00097 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47078 * 119.99625 * 18 16 14 21 21 H 1.48500 * 109.47352 * 240.00059 * 18 16 14 22 22 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 23 23 C 1.54327 * 107.26774 * 358.94057 * 22 5 4 24 24 H 1.09000 * 110.86856 * 96.24526 * 23 22 5 25 25 N 1.46904 * 110.71719 * 219.44185 * 23 22 5 26 26 H 1.09002 * 109.46921 * 182.44378 * 1 2 3 27 27 H 1.09003 * 109.47131 * 302.44898 * 1 2 3 28 28 H 1.09001 * 109.47089 * 62.44456 * 1 2 3 29 29 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 30 30 H 1.08997 * 110.36790 * 323.75724 * 4 2 1 31 31 H 0.97004 * 119.99293 * 0.02562 * 10 8 6 32 32 H 1.09008 * 109.47136 * 299.99821 * 11 10 8 33 33 H 1.09000 * 109.47546 * 60.00326 * 11 10 8 34 34 H 1.08997 * 109.47309 * 299.99642 * 12 11 10 35 35 H 1.08997 * 109.47120 * 60.00152 * 12 11 10 36 36 H 1.09000 * 109.47470 * 300.00111 * 13 12 11 37 37 H 1.09002 * 109.46698 * 59.99737 * 13 12 11 38 38 H 0.97005 * 119.99599 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.88316 * 118.35549 * 22 5 4 40 40 H 1.09002 * 109.88101 * 239.52444 * 22 5 4 41 41 H 1.00894 * 110.99864 * 293.52193 * 25 23 22 42 42 H 1.00900 * 110.99949 * 57.47984 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4462 -1.5658 -1.5942 7 8 4.2980 -1.5082 -2.7972 8 6 5.7593 -1.9935 -1.0227 9 8 5.9077 -2.0506 0.1804 10 7 6.7783 -2.3167 -1.8434 11 6 8.0652 -2.7364 -1.2832 12 6 9.0411 -3.0427 -2.4211 13 6 10.3854 -3.4805 -1.8360 14 6 11.3465 -3.7828 -2.9567 15 1 11.0303 -3.6732 -3.9836 16 6 12.6294 -4.1993 -2.6711 17 7 13.0143 -4.3332 -1.4207 18 14 13.8206 -4.5747 -4.0602 19 1 13.1475 -4.3477 -5.3644 20 1 15.0034 -3.6833 -3.9525 21 1 14.2579 -5.9909 -3.9682 22 6 3.4674 -1.2742 0.6959 23 6 2.0861 -0.8080 1.2021 24 1 1.4451 -1.6615 1.4229 25 7 2.2291 0.0518 2.3847 26 1 -0.3633 -1.0268 0.0438 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4754 -0.9111 29 1 2.1560 -0.1719 -2.0837 30 1 1.4518 -1.6703 -1.4025 31 1 6.6596 -2.2713 -2.8051 32 1 8.4699 -1.9363 -0.6634 33 1 7.9229 -3.6301 -0.6757 34 1 8.6367 -3.8426 -3.0413 35 1 9.1834 -2.1488 -3.0282 36 1 10.7898 -2.6804 -1.2160 37 1 10.2434 -4.3743 -1.2285 38 1 13.9171 -4.6259 -1.2198 39 1 3.6650 -2.2894 1.0399 40 1 4.2426 -0.5998 1.0598 41 1 2.5905 -0.4696 3.1692 42 1 2.8110 0.8509 2.1826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911215640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:27:46 Heat of formation + Delta-G solvation = -82.958848 kcal Electronic energy + Delta-G solvation = -21873.714763 eV Core-core repulsion = 18467.024277 eV Total energy + Delta-G solvation = -3406.690486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93007 -39.23267 -38.02022 -35.70255 -34.10462 -33.32894 -32.60989 -31.27020 -28.05491 -27.68343 -26.82540 -24.39733 -22.98064 -21.86700 -20.88215 -20.75602 -19.64798 -17.85445 -17.17213 -16.64494 -16.39914 -16.11207 -15.58710 -15.50923 -14.89955 -14.58311 -14.41693 -14.07089 -13.84190 -13.65824 -13.53322 -12.99803 -12.90010 -12.38196 -12.34137 -11.97936 -11.87580 -11.82904 -11.46762 -11.43212 -11.03999 -10.94680 -10.78863 -10.59723 -9.93295 -9.84879 -9.46010 -9.21133 -9.13925 -9.08314 -8.93989 -8.40360 -6.04928 -4.07880 1.38355 2.17256 3.17035 3.28711 3.36163 3.38289 3.41124 3.97747 4.02061 4.20146 4.41330 4.45530 4.53735 4.78979 4.86237 5.05806 5.19507 5.31191 5.35151 5.38998 5.47775 5.53407 5.56140 5.65660 5.73981 5.75388 5.89478 6.04473 6.23846 6.51049 6.59680 6.67518 6.91221 6.92399 6.94429 7.25970 7.59383 7.65474 7.70588 7.93450 8.01890 8.34694 8.98835 9.56663 11.06383 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.045525 B = 0.002492 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.895100 B =11233.368040 C =11755.146847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.106 3.894 5 N -0.593 5.593 6 C 0.521 3.479 7 O -0.521 6.521 8 C 0.502 3.498 9 O -0.524 6.524 10 N -0.691 5.691 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.074 3.926 23 C 0.080 3.920 24 H 0.100 0.900 25 N -0.833 5.833 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.411 0.589 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.347 0.653 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.911 8.525 5.081 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.016 4.016 5 N -0.327 5.327 6 C 0.304 3.696 7 O -0.396 6.396 8 C 0.282 3.718 9 O -0.401 6.401 10 N -0.343 5.343 11 C -0.007 4.007 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.051 4.051 23 C -0.033 4.033 24 H 0.118 0.882 25 N -0.361 5.361 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.161 0.839 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.428 8.530 5.313 27.342 hybrid contribution 1.860 -0.510 -1.187 2.265 sum -23.568 8.020 4.126 25.235 Atomic orbital electron populations 1.21633 0.92917 1.02329 1.02420 1.22414 0.97005 0.99351 0.92973 0.89425 1.22485 0.82048 0.98821 0.98235 1.48127 1.11888 1.65064 1.07664 1.20096 0.84750 0.78651 0.86112 1.90764 1.82765 1.52075 1.14033 1.19906 0.85104 0.79722 0.87081 1.90736 1.82847 1.52296 1.14207 1.46067 1.12300 1.64940 1.10968 1.21841 0.80675 1.00163 0.98045 1.21931 0.97034 1.00923 0.96190 1.19037 0.89043 0.96785 0.96474 1.21235 0.96637 1.45170 0.92971 0.92505 1.25034 0.98381 0.95554 0.95544 1.69977 1.18597 1.47239 1.17507 0.86513 0.81017 0.77948 0.82382 1.19719 1.20986 1.20979 1.23219 0.98940 1.03564 0.79391 1.22735 0.94221 0.95910 0.90408 0.88218 1.58903 1.59044 1.11573 1.06626 0.92383 0.91323 0.92338 0.89736 0.90609 0.75315 0.91140 0.91116 0.92405 0.92417 0.96208 0.96203 0.92965 0.90223 0.90369 0.83944 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.29 37.16 0.35 -0.35 16 2 C -0.10 -0.63 3.30 -88.47 -0.29 -0.92 16 3 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 4 C 0.11 0.90 6.37 -2.53 -0.02 0.88 16 5 N -0.59 -6.59 3.33 -171.02 -0.57 -7.15 16 6 C 0.52 7.30 7.91 -11.58 -0.09 7.21 16 7 O -0.52 -8.23 16.74 5.50 0.09 -8.13 16 8 C 0.50 7.67 7.86 -11.58 -0.09 7.58 16 9 O -0.52 -8.73 14.12 5.49 0.08 -8.65 16 10 N -0.69 -10.53 5.55 -60.73 -0.34 -10.87 16 11 C 0.11 1.97 5.67 -4.04 -0.02 1.95 16 12 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.07 0.69 5.23 -3.06 -0.02 0.68 16 23 C 0.08 0.53 3.57 -65.87 -0.24 0.30 16 24 H 0.10 0.63 8.01 -51.93 -0.42 0.21 16 25 N -0.83 -4.88 9.33 -3.11 -0.03 -4.91 16 26 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 31 H 0.41 5.78 7.94 -40.82 -0.32 5.45 16 32 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 40 H 0.08 0.80 7.38 -51.93 -0.38 0.42 16 41 H 0.35 1.73 9.08 -39.30 -0.36 1.37 16 42 H 0.34 1.89 8.85 -39.29 -0.35 1.54 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -31.95 349.65 -7.72 -39.66 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.83 Total: 2.30 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.11 Total: 1.93 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.20 Total: -48.84 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.17 Total: -16.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.95 -7.72 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911215640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.296 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds